Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18085 and DDA3937_RS18090 are separated by 866 nucleotides DDA3937_RS18090 and DDA3937_RS18095 are separated by 355 nucleotides
DDA3937_RS18085: DDA3937_RS18085 - division/cell wall cluster transcriptional repressor MraZ, at 4,127,510 to 4,127,968
_RS18085
DDA3937_RS18090: DDA3937_RS18090 - L-alanine exporter AlaE, at 4,128,835 to 4,129,296
_RS18090
DDA3937_RS18095: DDA3937_RS18095 - catabolite repressor/activator, at 4,129,652 to 4,130,656
_RS18095
Position (kb)
4128
4129
4130 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4127.975 kb on - strand at 4127.975 kb on - strand at 4127.975 kb on - strand at 4127.975 kb on - strand at 4128.085 kb on + strand at 4128.162 kb on + strand at 4128.204 kb on + strand at 4128.205 kb on - strand at 4128.228 kb on + strand at 4128.229 kb on - strand at 4128.231 kb on + strand at 4128.231 kb on + strand at 4128.274 kb on + strand at 4128.414 kb on - strand at 4128.428 kb on + strand at 4128.429 kb on - strand at 4128.433 kb on - strand at 4128.433 kb on - strand at 4128.433 kb on - strand at 4128.479 kb on - strand at 4128.524 kb on + strand at 4128.553 kb on + strand at 4128.553 kb on + strand at 4128.554 kb on - strand at 4128.554 kb on - strand at 4128.554 kb on - strand at 4128.669 kb on + strand at 4128.713 kb on + strand at 4128.722 kb on + strand at 4128.737 kb on - strand at 4128.737 kb on - strand at 4128.744 kb on + strand at 4128.744 kb on + strand at 4128.744 kb on + strand at 4128.744 kb on + strand at 4128.744 kb on + strand at 4128.745 kb on - strand at 4128.756 kb on - strand at 4128.756 kb on - strand at 4128.756 kb on - strand at 4128.774 kb on + strand at 4128.797 kb on - strand at 4128.797 kb on - strand at 4128.806 kb on + strand at 4128.807 kb on - strand at 4128.807 kb on - strand at 4128.807 kb on - strand at 4128.807 kb on - strand at 4128.829 kb on + strand at 4128.829 kb on + strand at 4128.829 kb on + strand at 4128.829 kb on + strand at 4128.830 kb on - strand at 4128.830 kb on - strand at 4128.830 kb on - strand at 4128.830 kb on - strand at 4128.830 kb on - strand at 4128.834 kb on + strand at 4128.834 kb on + strand at 4128.834 kb on + strand at 4128.834 kb on + strand at 4128.834 kb on + strand at 4128.834 kb on + strand at 4128.835 kb on - strand at 4128.835 kb on - strand at 4128.835 kb on - strand at 4128.895 kb on + strand, within DDA3937_RS18090 at 4128.895 kb on + strand, within DDA3937_RS18090 at 4128.895 kb on + strand, within DDA3937_RS18090 at 4128.895 kb on + strand, within DDA3937_RS18090 at 4128.896 kb on - strand, within DDA3937_RS18090 at 4128.896 kb on - strand, within DDA3937_RS18090 at 4129.010 kb on - strand, within DDA3937_RS18090 at 4129.099 kb on + strand, within DDA3937_RS18090 at 4129.099 kb on + strand, within DDA3937_RS18090 at 4129.100 kb on - strand, within DDA3937_RS18090 at 4129.100 kb on - strand, within DDA3937_RS18090 at 4129.100 kb on - strand, within DDA3937_RS18090 at 4129.123 kb on + strand, within DDA3937_RS18090 at 4129.200 kb on + strand, within DDA3937_RS18090 at 4129.200 kb on + strand, within DDA3937_RS18090 at 4129.200 kb on + strand, within DDA3937_RS18090 at 4129.200 kb on + strand, within DDA3937_RS18090 at 4129.237 kb on + strand, within DDA3937_RS18090 at 4129.294 kb on + strand at 4129.322 kb on + strand at 4129.322 kb on + strand at 4129.323 kb on - strand at 4129.323 kb on - strand at 4129.326 kb on + strand at 4129.338 kb on - strand at 4129.338 kb on - strand at 4129.338 kb on - strand at 4129.365 kb on - strand at 4129.365 kb on - strand at 4129.365 kb on - strand at 4129.365 kb on - strand at 4129.365 kb on - strand at 4129.368 kb on - strand at 4129.426 kb on + strand at 4129.427 kb on - strand at 4129.434 kb on + strand at 4129.434 kb on + strand at 4129.434 kb on + strand at 4129.434 kb on + strand at 4129.434 kb on + strand at 4129.434 kb on + strand at 4129.435 kb on - strand at 4129.435 kb on - strand at 4129.435 kb on - strand at 4129.438 kb on + strand at 4129.438 kb on + strand at 4129.438 kb on + strand at 4129.438 kb on + strand at 4129.439 kb on - strand at 4129.439 kb on - strand at 4129.439 kb on - strand at 4129.486 kb on + strand at 4129.497 kb on + strand at 4129.499 kb on + strand at 4129.499 kb on + strand at 4129.499 kb on + strand at 4129.500 kb on - strand at 4129.500 kb on - strand at 4129.500 kb on - strand at 4129.521 kb on - strand at 4129.533 kb on + strand at 4129.559 kb on + strand at 4129.559 kb on + strand at 4129.596 kb on - strand at 4129.612 kb on + strand at 4129.612 kb on + strand at 4129.613 kb on - strand at 4129.630 kb on - strand at 4129.696 kb on + strand at 4129.963 kb on - strand at 4129.998 kb on + strand, within DDA3937_RS18095 at 4129.999 kb on - strand, within DDA3937_RS18095 at 4130.011 kb on - strand, within DDA3937_RS18095 at 4130.014 kb on + strand, within DDA3937_RS18095 at 4130.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,127,975 - -0.7 4,127,975 - -2.7 4,127,975 - +0.1 4,127,975 - -1.7 4,128,085 + -0.4 4,128,162 + -0.5 4,128,204 + -0.8 4,128,205 - -0.4 4,128,228 + +0.3 4,128,229 - -0.2 4,128,231 + +0.2 4,128,231 + -1.2 4,128,274 + -1.5 4,128,414 - +0.0 4,128,428 + -0.1 4,128,429 - -2.1 4,128,433 - -0.7 4,128,433 - +0.5 4,128,433 - -0.4 4,128,479 - -0.6 4,128,524 + +0.1 4,128,553 + -0.2 4,128,553 + -1.1 4,128,554 - +2.3 4,128,554 - -1.7 4,128,554 - -0.3 4,128,669 + -0.3 4,128,713 + -0.3 4,128,722 + +0.3 4,128,737 - -1.7 4,128,737 - +0.5 4,128,744 + +0.1 4,128,744 + +0.3 4,128,744 + -0.5 4,128,744 + -0.3 4,128,744 + -0.2 4,128,745 - -0.3 4,128,756 - -1.8 4,128,756 - +0.1 4,128,756 - -0.3 4,128,774 + +0.3 4,128,797 - -0.8 4,128,797 - -0.5 4,128,806 + -0.3 4,128,807 - +0.1 4,128,807 - -0.8 4,128,807 - -1.1 4,128,807 - -0.7 4,128,829 + -0.5 4,128,829 + -0.5 4,128,829 + +1.8 4,128,829 + -0.2 4,128,830 - +1.8 4,128,830 - -0.5 4,128,830 - +0.5 4,128,830 - -0.5 4,128,830 - -0.2 4,128,834 + +0.4 4,128,834 + +0.5 4,128,834 + +0.2 4,128,834 + +0.0 4,128,834 + -0.1 4,128,834 + +1.1 4,128,835 - +0.3 4,128,835 - -0.2 4,128,835 - +0.9 4,128,895 + DDA3937_RS18090 0.13 -2.3 4,128,895 + DDA3937_RS18090 0.13 +0.9 4,128,895 + DDA3937_RS18090 0.13 -1.4 4,128,895 + DDA3937_RS18090 0.13 -0.5 4,128,896 - DDA3937_RS18090 0.13 +0.0 4,128,896 - DDA3937_RS18090 0.13 -0.9 4,129,010 - DDA3937_RS18090 0.38 +0.9 4,129,099 + DDA3937_RS18090 0.57 -2.0 4,129,099 + DDA3937_RS18090 0.57 -1.3 4,129,100 - DDA3937_RS18090 0.57 +0.5 4,129,100 - DDA3937_RS18090 0.57 -0.1 4,129,100 - DDA3937_RS18090 0.57 +1.0 4,129,123 + DDA3937_RS18090 0.62 -0.1 4,129,200 + DDA3937_RS18090 0.79 -1.1 4,129,200 + DDA3937_RS18090 0.79 -0.8 4,129,200 + DDA3937_RS18090 0.79 -0.5 4,129,200 + DDA3937_RS18090 0.79 -0.2 4,129,237 + DDA3937_RS18090 0.87 -1.8 4,129,294 + -0.5 4,129,322 + -0.4 4,129,322 + +0.8 4,129,323 - +0.3 4,129,323 - +1.5 4,129,326 + -0.9 4,129,338 - -0.8 4,129,338 - +0.6 4,129,338 - -0.4 4,129,365 - -0.4 4,129,365 - -0.1 4,129,365 - +1.0 4,129,365 - +1.1 4,129,365 - -0.5 4,129,368 - -0.7 4,129,426 + -0.5 4,129,427 - +0.6 4,129,434 + +0.9 4,129,434 + -0.3 4,129,434 + +0.2 4,129,434 + +1.1 4,129,434 + +0.6 4,129,434 + -1.5 4,129,435 - -0.7 4,129,435 - -0.1 4,129,435 - -2.1 4,129,438 + -0.4 4,129,438 + +1.8 4,129,438 + -1.0 4,129,438 + -0.8 4,129,439 - -2.1 4,129,439 - -1.5 4,129,439 - -0.0 4,129,486 + +0.5 4,129,497 + -2.5 4,129,499 + -0.1 4,129,499 + -0.4 4,129,499 + +0.8 4,129,500 - -0.3 4,129,500 - -0.1 4,129,500 - +0.1 4,129,521 - -0.8 4,129,533 + +0.2 4,129,559 + -0.6 4,129,559 + +0.7 4,129,596 - +0.6 4,129,612 + +2.3 4,129,612 + -0.6 4,129,613 - +1.7 4,129,630 - -0.3 4,129,696 + -0.5 4,129,963 - -1.1 4,129,998 + DDA3937_RS18095 0.34 -0.0 4,129,999 - DDA3937_RS18095 0.35 +0.7 4,130,011 - DDA3937_RS18095 0.36 -0.8 4,130,014 + DDA3937_RS18095 0.36 -1.0 4,130,106 + +1.5
Or see this region's nucleotide sequence