Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16725

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,805,622	+		DDA3937_RS16720	0.18	+0.3
3,805,644	-		DDA3937_RS16720	0.19	-1.1
3,805,644	-		DDA3937_RS16720	0.19	-0.6
3,805,650	+		DDA3937_RS16720	0.20	+0.1
3,805,651	-				+0.4
3,805,684	-		DDA3937_RS16720	0.23	+0.7
3,805,725	+		DDA3937_RS16720	0.26	-0.4
3,805,776	+		DDA3937_RS16720	0.30	-0.6
3,805,776	+		DDA3937_RS16720	0.30	-0.0
3,805,776	+		DDA3937_RS16720	0.30	+0.1
3,805,776	+		DDA3937_RS16720	0.30	-1.1
3,805,879	+		DDA3937_RS16720	0.39	+0.8
3,805,879	+		DDA3937_RS16720	0.39	+0.2
3,805,880	-		DDA3937_RS16720	0.39	-1.0
3,805,904	+				+0.4
3,805,905	-		DDA3937_RS16720	0.41	-0.5
3,805,905	-		DDA3937_RS16720	0.41	+1.0
3,806,188	+		DDA3937_RS16720	0.65	+0.1
3,806,188	+		DDA3937_RS16720	0.65	-0.1
3,806,188	+		DDA3937_RS16720	0.65	+0.2
3,806,188	+		DDA3937_RS16720	0.65	+0.2
3,806,188	+		DDA3937_RS16720	0.65	-0.2
3,806,188	+		DDA3937_RS16720	0.65	+0.9
3,806,189	-		DDA3937_RS16720	0.65	-0.2
3,806,189	-		DDA3937_RS16720	0.65	-0.2
3,806,189	-		DDA3937_RS16720	0.65	-0.1
3,806,192	+		DDA3937_RS16720	0.65	+0.2
3,806,192	+		DDA3937_RS16720	0.65	+0.3
3,806,192	+		DDA3937_RS16720	0.65	+1.6
3,806,192	+		DDA3937_RS16720	0.65	+1.2
3,806,192	+		DDA3937_RS16720	0.65	-0.6
3,806,192	+				+0.9
3,806,192	+		DDA3937_RS16720	0.65	+1.4
3,806,192	+		DDA3937_RS16720	0.65	+0.4
3,806,192	+		DDA3937_RS16720	0.65	+0.1
3,806,193	-		DDA3937_RS16720	0.65	-0.6
3,806,193	-		DDA3937_RS16720	0.65	+0.4
3,806,193	-		DDA3937_RS16720	0.65	+0.7
3,806,193	-		DDA3937_RS16720	0.65	+0.2
3,806,193	-		DDA3937_RS16720	0.65	-0.1
3,806,193	-		DDA3937_RS16720	0.65	+1.1
3,806,193	-		DDA3937_RS16720	0.65	-1.1
3,806,193	-		DDA3937_RS16720	0.65	+0.6
3,806,193	-				-1.2
3,806,193	-		DDA3937_RS16720	0.65	+0.6
3,806,193	-		DDA3937_RS16720	0.65	+1.8
3,806,196	+		DDA3937_RS16720	0.65	+0.5
3,806,196	+		DDA3937_RS16720	0.65	+0.8
3,806,196	+				-1.0
3,806,197	-		DDA3937_RS16720	0.65	-1.0
3,806,197	-		DDA3937_RS16720	0.65	+0.0
3,806,197	-		DDA3937_RS16720	0.65	-0.4
3,806,197	-		DDA3937_RS16720	0.65	-0.1
3,806,218	-		DDA3937_RS16720	0.67	-0.1
3,806,344	+		DDA3937_RS16720	0.78	-0.6
3,806,345	-		DDA3937_RS16720	0.78	-0.2
3,806,378	+		DDA3937_RS16720	0.80	+1.6
3,806,379	-		DDA3937_RS16720	0.80	+0.1
3,806,438	+		DDA3937_RS16720	0.85	+1.2
3,806,545	+				+0.9
3,806,545	+				-0.4
3,806,545	+				+0.4
3,806,546	-				+0.1
3,806,546	-				+0.5
3,806,546	-				-1.6
3,806,546	-				-0.1
3,806,546	-				+0.6
3,806,556	+				+0.7
3,806,556	+				+0.5
3,806,557	-				-0.4
3,806,557	-				+0.2
3,806,557	-				+0.1
3,806,598	+				+0.5
3,806,598	+				+1.4
3,806,598	+				-0.4
3,806,599	-				+0.9
3,806,599	-				+1.0
3,806,614	+				-0.5
3,806,847	+		DDA3937_RS16725	0.20	+0.0
3,806,847	+		DDA3937_RS16725	0.20	-2.0
3,806,847	+		DDA3937_RS16725	0.20	+1.0
3,806,848	-		DDA3937_RS16725	0.20	-0.0
3,806,848	-		DDA3937_RS16725	0.20	+0.2
3,806,848	-		DDA3937_RS16725	0.20	+0.4
3,807,034	+		DDA3937_RS16725	0.35	+1.0
3,807,034	+		DDA3937_RS16725	0.35	-0.5
3,807,035	-		DDA3937_RS16725	0.35	+0.9
3,807,319	+		DDA3937_RS16725	0.58	+1.0
3,807,320	-		DDA3937_RS16725	0.58	+0.5
3,807,320	-		DDA3937_RS16725	0.58	-2.4
3,807,320	-		DDA3937_RS16725	0.58	-0.2
3,807,320	-		DDA3937_RS16725	0.58	+0.5
3,807,335	+		DDA3937_RS16725	0.60	+0.7
3,807,336	-		DDA3937_RS16725	0.60	-1.0
3,807,336	-		DDA3937_RS16725	0.60	+0.5
3,807,371	-		DDA3937_RS16725	0.63	-2.2
3,807,390	+				-1.2
3,807,398	-		DDA3937_RS16725	0.65	-1.0
3,807,398	-		DDA3937_RS16725	0.65	+0.1
3,807,450	+		DDA3937_RS16725	0.69	+0.2
3,807,451	-		DDA3937_RS16725	0.69	+1.3
3,807,522	+		DDA3937_RS16725	0.75	+1.4
3,807,523	-		DDA3937_RS16725	0.75	+0.4
3,807,523	-		DDA3937_RS16725	0.75	+0.6
3,807,825	-				-0.4
3,807,825	-				+1.1
3,807,825	-				+0.8
3,807,917	+				+0.2
3,807,924	+				-2.2
3,807,924	+				-1.3
3,807,924	+				+0.4
3,807,924	+				-0.9
3,807,925	-				-0.2
3,807,932	+				-0.3
3,807,933	-				+0.4
3,807,933	-				-1.3
3,807,933	-				+0.6
3,807,948	-				-0.5
3,807,953	+				-0.7
3,807,954	-				-0.8
3,807,983	+				+0.3
3,807,988	+				-0.4
3,807,996	-				+0.6
3,807,996	-				-0.9
3,808,061	+		DDA3937_RS16730	0.11	+0.6
3,808,062	-		DDA3937_RS16730	0.11	-0.9
3,808,119	+		DDA3937_RS16730	0.17	-1.9
3,808,120	-		DDA3937_RS16730	0.17	-1.6
3,808,121	+		DDA3937_RS16730	0.17	+1.7
3,808,121	+		DDA3937_RS16730	0.17	+0.6
3,808,122	-		DDA3937_RS16730	0.17	-0.5
3,808,122	-		DDA3937_RS16730	0.17	+0.4
3,808,122	-		DDA3937_RS16730	0.17	+0.7
3,808,162	-		DDA3937_RS16730	0.21	+0.3
3,808,230	+		DDA3937_RS16730	0.28	+0.2
3,808,230	+		DDA3937_RS16730	0.28	-0.3
3,808,230	+		DDA3937_RS16730	0.28	-0.6
3,808,230	+		DDA3937_RS16730	0.28	+0.7
3,808,231	-		DDA3937_RS16730	0.28	-0.2
3,808,231	-		DDA3937_RS16730	0.28	-0.1
3,808,231	-		DDA3937_RS16730	0.28	-0.3
3,808,231	-		DDA3937_RS16730	0.28	-0.6
3,808,231	-		DDA3937_RS16730	0.28	+0.4
3,808,231	-		DDA3937_RS16730	0.28	+0.3
3,808,231	-		DDA3937_RS16730	0.28	-1.1
3,808,231	-		DDA3937_RS16730	0.28	+0.7
3,808,275	+		DDA3937_RS16730	0.33	-0.1
3,808,276	-		DDA3937_RS16730	0.33	+0.2
3,808,276	-		DDA3937_RS16730	0.33	-0.4
3,808,299	+		DDA3937_RS16730	0.35	+0.4
3,808,300	-		DDA3937_RS16730	0.35	+0.7
3,808,338	-		DDA3937_RS16730	0.39	+0.6
3,808,422	-		DDA3937_RS16730	0.47	+0.1
3,808,509	+		DDA3937_RS16730	0.56	-0.1
3,808,509	+		DDA3937_RS16730	0.56	-0.9
3,808,510	-		DDA3937_RS16730	0.56	-0.6
3,808,543	-		DDA3937_RS16730	0.60	+0.4
3,808,543	-		DDA3937_RS16730	0.60	-0.6
3,808,554	-		DDA3937_RS16730	0.61	-0.4
3,808,554	-				-1.2
3,808,554	-				-1.4
3,808,564	+		DDA3937_RS16730	0.62	-0.1
3,808,565	-		DDA3937_RS16730	0.62	-0.0
3,808,592	-		DDA3937_RS16730	0.64	+0.3
3,808,592	-		DDA3937_RS16730	0.64	+0.4
3,808,592	-		DDA3937_RS16730	0.64	+0.1
3,808,688	+		DDA3937_RS16730	0.74	-0.6
3,808,689	-		DDA3937_RS16730	0.74	-1.1
3,808,701	+		DDA3937_RS16730	0.75	+0.1
3,808,721	+		DDA3937_RS16730	0.77	-0.1
3,808,721	+		DDA3937_RS16730	0.77	+0.8
3,808,722	-		DDA3937_RS16730	0.77	-0.6
3,808,722	-		DDA3937_RS16730	0.77	+0.5
3,808,722	-		DDA3937_RS16730	0.77	-1.7
3,808,722	-		DDA3937_RS16730	0.77	-0.7