Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16550

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,768,438	+		DDA3937_RS16545	0.30	+0.2
3,768,438	+		DDA3937_RS16545	0.30	-0.9
3,768,438	+		DDA3937_RS16545	0.30	-0.9
3,768,438	+		DDA3937_RS16545	0.30	+0.1
3,768,438	+		DDA3937_RS16545	0.30	+0.4
3,768,439	-		DDA3937_RS16545	0.30	-0.7
3,768,439	-		DDA3937_RS16545	0.30	+0.7
3,768,439	-		DDA3937_RS16545	0.30	-0.6
3,768,439	-		DDA3937_RS16545	0.30	-0.1
3,768,476	-		DDA3937_RS16545	0.33	-1.1
3,768,502	-		DDA3937_RS16545	0.35	+0.0
3,768,535	+		DDA3937_RS16545	0.38	-0.9
3,768,536	-		DDA3937_RS16545	0.38	+0.8
3,768,536	-		DDA3937_RS16545	0.38	-0.2
3,768,554	-		DDA3937_RS16545	0.39	+0.4
3,768,558	-		DDA3937_RS16545	0.39	+0.7
3,768,656	-		DDA3937_RS16545	0.47	+0.8
3,768,754	+		DDA3937_RS16545	0.55	-0.5
3,768,755	-		DDA3937_RS16545	0.55	-2.4
3,768,755	-		DDA3937_RS16545	0.55	-0.1
3,768,755	-		DDA3937_RS16545	0.55	+0.4
3,768,834	-		DDA3937_RS16545	0.61	-0.0
3,768,885	-		DDA3937_RS16545	0.65	-0.4
3,768,939	-		DDA3937_RS16545	0.69	-0.0
3,768,939	-		DDA3937_RS16545	0.69	-1.1
3,769,153	+		DDA3937_RS16545	0.86	-0.1
3,769,153	+		DDA3937_RS16545	0.86	-0.4
3,769,154	-		DDA3937_RS16545	0.86	+0.7
3,769,185	+		DDA3937_RS16545	0.89	+0.1
3,769,185	+				-0.4
3,769,185	+		DDA3937_RS16545	0.89	-0.9
3,769,186	-		DDA3937_RS16545	0.89	-0.5
3,769,186	-		DDA3937_RS16545	0.89	+0.4
3,769,204	+				-1.0
3,769,204	+				-1.1
3,769,205	-				-1.2
3,769,261	+				-1.0
3,769,261	+				+0.8
3,769,403	+				-1.6
3,769,404	-		DDA3937_RS16550	0.13	-0.1
3,769,404	-		DDA3937_RS16550	0.13	-1.5
3,769,513	+		DDA3937_RS16550	0.34	-0.6
3,769,514	-		DDA3937_RS16550	0.34	-0.1
3,769,559	-		DDA3937_RS16550	0.42	-1.2
3,769,616	+		DDA3937_RS16550	0.53	-1.0
3,769,617	-		DDA3937_RS16550	0.53	+0.4
3,769,726	+		DDA3937_RS16550	0.73	-0.8
3,769,726	+		DDA3937_RS16550	0.73	-1.8
3,769,848	+				-2.0
3,769,849	-				-0.7
3,769,849	-				+0.5
3,769,904	+				-0.6
3,769,905	-				-0.1
3,769,905	-				-3.3
3,769,905	-				+0.1
3,770,032	-				-0.8
3,770,063	-				-0.2
3,770,080	+				+0.1
3,770,229	+		DDA3937_RS16555	0.21	+0.4
3,770,229	+		DDA3937_RS16555	0.21	-0.3
3,770,230	-		DDA3937_RS16555	0.21	+1.5
3,770,230	-		DDA3937_RS16555	0.21	+1.2
3,770,364	+		DDA3937_RS16555	0.31	-0.6
3,770,364	+		DDA3937_RS16555	0.31	-2.2
3,770,365	-		DDA3937_RS16555	0.32	-1.4
3,770,471	+		DDA3937_RS16555	0.40	-0.4
3,770,471	+		DDA3937_RS16555	0.40	+0.4
3,770,471	+		DDA3937_RS16555	0.40	-0.6
3,770,472	-		DDA3937_RS16555	0.40	+0.0
3,770,565	+		DDA3937_RS16555	0.48	-0.3
3,770,565	+		DDA3937_RS16555	0.48	-0.5
3,770,565	+		DDA3937_RS16555	0.48	+0.4
3,770,566	-		DDA3937_RS16555	0.48	-1.4
3,770,566	-		DDA3937_RS16555	0.48	-0.2
3,770,586	+		DDA3937_RS16555	0.49	+0.2
3,770,586	+		DDA3937_RS16555	0.49	-0.5
3,770,586	+		DDA3937_RS16555	0.49	-0.1
3,770,587	-		DDA3937_RS16555	0.49	+1.5
3,770,587	-		DDA3937_RS16555	0.49	-0.1
3,770,603	-		DDA3937_RS16555	0.51	-0.4
3,770,624	+		DDA3937_RS16555	0.52	+0.8
3,770,721	+		DDA3937_RS16555	0.60	-0.6
3,770,722	-		DDA3937_RS16555	0.60	-0.2
3,770,749	-		DDA3937_RS16555	0.62	+0.2
3,770,823	+		DDA3937_RS16555	0.68	+0.6
3,770,824	-		DDA3937_RS16555	0.68	+0.1
3,770,824	-		DDA3937_RS16555	0.68	+0.2
3,770,824	-		DDA3937_RS16555	0.68	-0.3