Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16540

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,766,679	-		DDA3937_RS16535	0.33	+0.4
3,766,694	+		DDA3937_RS16535	0.35	+0.7
3,767,033	-		DDA3937_RS16535	0.65	-0.2
3,767,136	+		DDA3937_RS16535	0.75	-0.7
3,767,136	+		DDA3937_RS16535	0.75	-0.2
3,767,136	+		DDA3937_RS16535	0.75	+1.0
3,767,137	-		DDA3937_RS16535	0.75	-0.3
3,767,335	+				+0.6
3,767,336	-				+0.1
3,767,416	+				-0.1
3,767,417	-				-1.0
3,767,417	-				+0.6
3,767,441	+				+1.1
3,767,441	+				-0.9
3,767,441	+				-0.1
3,767,441	+				-1.6
3,767,442	-				+0.8
3,767,442	-				-0.2
3,767,442	-				-0.1
3,767,443	+				+1.8
3,767,451	+				-0.4
3,767,451	+				+0.9
3,767,451	+				-0.4
3,767,452	-				+0.2
3,767,470	+				-0.2
3,767,487	+				-1.6
3,767,584	+		DDA3937_RS16540	0.12	+1.0
3,767,642	-				+1.4
3,767,642	-		DDA3937_RS16540	0.28	+0.5
3,767,650	-		DDA3937_RS16540	0.30	+0.6
3,767,656	-		DDA3937_RS16540	0.32	+2.2
3,767,659	-		DDA3937_RS16540	0.33	-0.2
3,767,711	+				-0.2
3,767,712	-		DDA3937_RS16540	0.47	-0.1
3,767,712	-		DDA3937_RS16540	0.47	-0.2
3,767,712	-		DDA3937_RS16540	0.47	+1.4
3,767,853	-		DDA3937_RS16540	0.86	+0.4
3,767,914	+				+0.5
3,767,915	-				+0.5
3,767,919	-				-0.8
3,767,919	-				-0.1
3,767,919	-				+0.7
3,768,042	+				+0.4
3,768,043	-				-0.6
3,768,044	+				-1.1
3,768,068	+				-0.6
3,768,069	-				+0.2
3,768,134	-				+0.6
3,768,141	+				+1.4
3,768,141	+				-0.2
3,768,141	+				-0.8
3,768,141	+				+1.4
3,768,141	+				+0.9
3,768,141	+				+0.4
3,768,142	-				-1.2
3,768,142	-				+0.7
3,768,142	-				-0.3
3,768,142	-				-1.6
3,768,142	-				-0.3
3,768,142	-				+0.0
3,768,307	+		DDA3937_RS16545	0.20	+0.7
3,768,308	-		DDA3937_RS16545	0.20	-1.0
3,768,314	+		DDA3937_RS16545	0.20	-1.5
3,768,315	-		DDA3937_RS16545	0.20	-0.0
3,768,325	+		DDA3937_RS16545	0.21	+0.5
3,768,326	-		DDA3937_RS16545	0.21	-0.2
3,768,438	+		DDA3937_RS16545	0.30	+0.2
3,768,438	+		DDA3937_RS16545	0.30	-0.9
3,768,438	+		DDA3937_RS16545	0.30	-0.9
3,768,438	+		DDA3937_RS16545	0.30	+0.1
3,768,438	+		DDA3937_RS16545	0.30	+0.4
3,768,439	-		DDA3937_RS16545	0.30	-0.7
3,768,439	-		DDA3937_RS16545	0.30	+0.7
3,768,439	-		DDA3937_RS16545	0.30	-0.6
3,768,439	-		DDA3937_RS16545	0.30	-0.1
3,768,476	-		DDA3937_RS16545	0.33	-1.1
3,768,502	-		DDA3937_RS16545	0.35	+0.0
3,768,535	+		DDA3937_RS16545	0.38	-0.9
3,768,536	-		DDA3937_RS16545	0.38	+0.8
3,768,536	-		DDA3937_RS16545	0.38	-0.2
3,768,554	-		DDA3937_RS16545	0.39	+0.4
3,768,558	-		DDA3937_RS16545	0.39	+0.7
3,768,656	-		DDA3937_RS16545	0.47	+0.8
3,768,754	+		DDA3937_RS16545	0.55	-0.5
3,768,755	-		DDA3937_RS16545	0.55	-2.4
3,768,755	-		DDA3937_RS16545	0.55	-0.1
3,768,755	-		DDA3937_RS16545	0.55	+0.4
3,768,834	-		DDA3937_RS16545	0.61	-0.0
3,768,885	-		DDA3937_RS16545	0.65	-0.4