Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15505 and DDA3937_RS15510 are separated by 332 nucleotides DDA3937_RS15510 and DDA3937_RS15515 are separated by 98 nucleotides DDA3937_RS15515 and DDA3937_RS15520 are separated by 11 nucleotides DDA3937_RS15520 and DDA3937_RS15525 are separated by 1 nucleotides
DDA3937_RS15505: DDA3937_RS15505 - IS110 family transposase, at 3,552,764 to 3,553,753
_RS15505
DDA3937_RS15510: DDA3937_RS15510 - aminopeptidase PepB, at 3,554,086 to 3,555,381
_RS15510
DDA3937_RS15515: DDA3937_RS15515 - Fe-S cluster assembly protein IscX, at 3,555,480 to 3,555,680
_RS15515
DDA3937_RS15520: DDA3937_RS15520 - ISC system 2Fe-2S type ferredoxin, at 3,555,692 to 3,556,027
_RS15520
DDA3937_RS15525: DDA3937_RS15525 - Fe-S protein assembly chaperone HscA, at 3,556,029 to 3,557,879
_RS15525
Position (kb)
3554
3555
3556 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3553.958 kb on + strand at 3553.958 kb on + strand at 3553.991 kb on + strand at 3554.059 kb on - strand at 3554.080 kb on - strand at 3554.087 kb on + strand at 3554.097 kb on + strand at 3554.177 kb on + strand at 3554.178 kb on - strand at 3554.178 kb on - strand at 3554.178 kb on - strand at 3554.430 kb on - strand at 3554.533 kb on + strand, within DDA3937_RS15510 at 3554.534 kb on - strand, within DDA3937_RS15510 at 3554.534 kb on - strand, within DDA3937_RS15510 at 3554.554 kb on - strand, within DDA3937_RS15510 at 3554.596 kb on - strand, within DDA3937_RS15510 at 3554.648 kb on + strand, within DDA3937_RS15510 at 3554.649 kb on - strand, within DDA3937_RS15510 at 3554.769 kb on - strand, within DDA3937_RS15510 at 3554.846 kb on + strand, within DDA3937_RS15510 at 3554.846 kb on + strand, within DDA3937_RS15510 at 3554.847 kb on - strand, within DDA3937_RS15510 at 3554.847 kb on - strand, within DDA3937_RS15510 at 3554.909 kb on + strand at 3554.909 kb on + strand, within DDA3937_RS15510 at 3554.910 kb on - strand, within DDA3937_RS15510 at 3554.910 kb on - strand, within DDA3937_RS15510 at 3554.940 kb on + strand, within DDA3937_RS15510 at 3555.210 kb on + strand, within DDA3937_RS15510 at 3555.211 kb on - strand, within DDA3937_RS15510 at 3555.285 kb on + strand at 3555.285 kb on + strand at 3555.285 kb on + strand at 3555.285 kb on + strand at 3555.286 kb on - strand at 3555.286 kb on - strand at 3555.286 kb on - strand at 3555.286 kb on - strand at 3555.286 kb on - strand at 3555.286 kb on - strand at 3555.382 kb on - strand at 3555.387 kb on + strand at 3555.387 kb on + strand at 3555.387 kb on + strand at 3555.387 kb on + strand at 3555.388 kb on - strand at 3555.625 kb on + strand, within DDA3937_RS15515 at 3555.634 kb on + strand, within DDA3937_RS15515 at 3555.635 kb on - strand, within DDA3937_RS15515 at 3555.680 kb on + strand at 3555.680 kb on + strand at 3555.721 kb on - strand at 3556.030 kb on + strand at 3556.032 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,553,958 + +0.5 3,553,958 + +0.6 3,553,991 + -0.6 3,554,059 - +0.2 3,554,080 - +0.0 3,554,087 + -0.1 3,554,097 + +1.5 3,554,177 + -0.2 3,554,178 - +0.5 3,554,178 - +0.5 3,554,178 - +1.5 3,554,430 - -0.7 3,554,533 + DDA3937_RS15510 0.34 +1.4 3,554,534 - DDA3937_RS15510 0.35 +1.6 3,554,534 - DDA3937_RS15510 0.35 +0.0 3,554,554 - DDA3937_RS15510 0.36 +0.1 3,554,596 - DDA3937_RS15510 0.39 +0.2 3,554,648 + DDA3937_RS15510 0.43 +1.8 3,554,649 - DDA3937_RS15510 0.43 +1.3 3,554,769 - DDA3937_RS15510 0.53 +1.0 3,554,846 + DDA3937_RS15510 0.59 +0.8 3,554,846 + DDA3937_RS15510 0.59 +1.4 3,554,847 - DDA3937_RS15510 0.59 -0.7 3,554,847 - DDA3937_RS15510 0.59 -0.2 3,554,909 + +2.3 3,554,909 + DDA3937_RS15510 0.64 +0.5 3,554,910 - DDA3937_RS15510 0.64 +0.3 3,554,910 - DDA3937_RS15510 0.64 +1.2 3,554,940 + DDA3937_RS15510 0.66 +1.1 3,555,210 + DDA3937_RS15510 0.87 +0.5 3,555,211 - DDA3937_RS15510 0.87 +0.8 3,555,285 + +2.3 3,555,285 + +0.5 3,555,285 + +2.4 3,555,285 + +1.3 3,555,286 - +0.5 3,555,286 - +0.4 3,555,286 - +1.2 3,555,286 - +0.9 3,555,286 - +0.3 3,555,286 - +0.9 3,555,382 - -0.4 3,555,387 + +0.9 3,555,387 + +1.5 3,555,387 + +2.1 3,555,387 + +1.3 3,555,388 - +0.5 3,555,625 + DDA3937_RS15515 0.72 -2.2 3,555,634 + DDA3937_RS15515 0.77 -0.1 3,555,635 - DDA3937_RS15515 0.77 +0.6 3,555,680 + -0.1 3,555,680 + +1.8 3,555,721 - -2.1 3,556,030 + +0.5 3,556,032 + +0.3
Or see this region's nucleotide sequence