Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14865

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,409,927	+				-0.5
3,409,928	-				-0.5
3,409,932	-				+1.2
3,409,983	+				-0.1
3,409,985	+				-0.2
3,409,986	-				+0.1
3,409,986	-				+0.6
3,410,027	-				+0.5
3,410,027	-				-0.3
3,410,229	+		DDA3937_RS14860	0.54	-0.2
3,410,231	+		DDA3937_RS14860	0.55	+0.3
3,410,231	+		DDA3937_RS14860	0.55	-3.1
3,410,231	+		DDA3937_RS14860	0.55	-0.1
3,410,232	-		DDA3937_RS14860	0.55	-0.3
3,410,232	-		DDA3937_RS14860	0.55	-2.3
3,410,232	-		DDA3937_RS14860	0.55	+0.2
3,410,232	-		DDA3937_RS14860	0.55	-1.8
3,410,232	-		DDA3937_RS14860	0.55	-1.0
3,410,232	-		DDA3937_RS14860	0.55	+0.5
3,410,232	-		DDA3937_RS14860	0.55	-1.1
3,410,237	-		DDA3937_RS14860	0.57	-0.4
3,410,259	+		DDA3937_RS14860	0.63	-0.4
3,410,259	+		DDA3937_RS14860	0.63	+0.6
3,410,259	+		DDA3937_RS14860	0.63	-0.8
3,410,260	-		DDA3937_RS14860	0.64	-1.0
3,410,260	-		DDA3937_RS14860	0.64	-0.2
3,410,291	+		DDA3937_RS14860	0.74	-1.0
3,410,291	+		DDA3937_RS14860	0.74	+0.8
3,410,292	-		DDA3937_RS14860	0.74	-0.6
3,410,292	-		DDA3937_RS14860	0.74	+0.4
3,410,295	+		DDA3937_RS14860	0.75	-0.9
3,410,295	+				-2.1
3,410,295	+		DDA3937_RS14860	0.75	+0.8
3,410,296	-		DDA3937_RS14860	0.75	+0.2
3,410,296	-		DDA3937_RS14860	0.75	-0.2
3,410,296	-		DDA3937_RS14860	0.75	-0.2
3,410,296	-		DDA3937_RS14860	0.75	-0.3
3,410,296	-		DDA3937_RS14860	0.75	-0.5
3,410,305	+		DDA3937_RS14860	0.78	-0.1
3,410,305	+		DDA3937_RS14860	0.78	-0.1
3,410,306	-		DDA3937_RS14860	0.78	-1.4
3,410,333	+		DDA3937_RS14860	0.87	+0.7
3,410,334	-		DDA3937_RS14860	0.87	-0.5
3,410,353	-				-0.5
3,410,372	-				+0.4
3,410,412	+				-1.4
3,410,413	-				-0.1
3,410,431	+				-0.2
3,410,431	+				-0.8
3,410,431	+				-0.1
3,410,432	-				+0.2
3,410,560	+				-1.0
3,410,591	+				-1.3
3,410,591	+				-0.8
3,410,592	-				-0.4
3,410,592	-				-3.0
3,410,592	-				+0.0
3,410,837	+				-0.1
3,410,838	-				-0.4
3,410,838	-				-0.4
3,410,873	+				+0.9
3,410,880	+				-0.9
3,410,894	+				+0.6
3,410,942	-				-1.0
3,411,118	+		DDA3937_RS14865	0.22	-1.0
3,411,118	+		DDA3937_RS14865	0.22	-0.1
3,411,118	+		DDA3937_RS14865	0.22	-0.0
3,411,118	+		DDA3937_RS14865	0.22	-0.5
3,411,258	+		DDA3937_RS14865	0.34	+0.1
3,411,258	+		DDA3937_RS14865	0.34	-0.6
3,411,259	-		DDA3937_RS14865	0.34	+0.6
3,411,269	+		DDA3937_RS14865	0.35	+0.4
3,411,270	-		DDA3937_RS14865	0.35	-0.8
3,411,409	+		DDA3937_RS14865	0.48	-0.0
3,411,409	+		DDA3937_RS14865	0.48	-0.1
3,411,409	+		DDA3937_RS14865	0.48	+0.1
3,411,410	-		DDA3937_RS14865	0.48	-0.9
3,411,410	-		DDA3937_RS14865	0.48	-0.6
3,411,410	-		DDA3937_RS14865	0.48	-0.4
3,411,412	-		DDA3937_RS14865	0.48	-0.1
3,411,412	-		DDA3937_RS14865	0.48	+2.8
3,411,412	-		DDA3937_RS14865	0.48	-3.1
3,411,413	+		DDA3937_RS14865	0.48	+0.9
3,411,413	+		DDA3937_RS14865	0.48	-0.2
3,411,414	-		DDA3937_RS14865	0.48	+0.0
3,411,522	+		DDA3937_RS14865	0.58	-0.5
3,411,522	+		DDA3937_RS14865	0.58	-1.4
3,411,523	-		DDA3937_RS14865	0.58	-0.6
3,411,523	-		DDA3937_RS14865	0.58	-0.2
3,411,523	-		DDA3937_RS14865	0.58	-0.3
3,411,555	+		DDA3937_RS14865	0.61	+1.1
3,411,555	+		DDA3937_RS14865	0.61	-1.6
3,411,555	+		DDA3937_RS14865	0.61	+0.2
3,411,556	-		DDA3937_RS14865	0.61	-0.2
3,411,571	+		DDA3937_RS14865	0.62	+0.1
3,411,606	+		DDA3937_RS14865	0.65	+0.4
3,411,735	+		DDA3937_RS14865	0.77	+0.4
3,411,791	-		DDA3937_RS14865	0.82	+0.7
3,411,805	+		DDA3937_RS14865	0.83	-1.1
3,411,880	+		DDA3937_RS14865	0.90	-0.9
3,411,880	+		DDA3937_RS14865	0.90	+0.0
3,411,880	+		DDA3937_RS14865	0.90	+0.7
3,411,881	-		DDA3937_RS14865	0.90	-0.3
3,411,881	-		DDA3937_RS14865	0.90	+0.0
3,411,889	-				-0.6
3,411,953	-				+0.2
3,411,994	-				-0.7
3,411,994	-				-0.2
3,412,019	+				-0.6
3,412,020	-				-0.0
3,412,070	+				+0.6
3,412,152	+				+0.2
3,412,153	-				-0.0
3,412,153	-				-0.6
3,412,153	-				-0.6
3,412,222	+				+0.1
3,412,222	+				-1.4
3,412,222	+				-0.1
3,412,223	-				-0.4
3,412,223	-				-0.7
3,412,223	-				-0.1
3,412,223	-				+0.5
3,412,223	-				+0.4
3,412,301	-		DDA3937_RS14870	0.35	+0.0
3,412,303	+		DDA3937_RS14870	0.36	-0.3
3,412,304	-		DDA3937_RS14870	0.37	+0.0
3,412,452	+				-0.7
3,412,452	+				-0.8
3,412,452	+				-0.4
3,412,453	-				-0.5
3,412,459	+				-0.4
3,412,460	-				+0.8
3,412,467	+				+0.3
3,412,467	+				+0.0
3,412,467	+				-2.8
3,412,468	-				-2.1
3,412,468	-				-0.2
3,412,474	+				+0.4
3,412,475	-				-0.6
3,412,475	-				+0.2
3,412,482	+				-0.2
3,412,482	+				+0.9
3,412,483	-				+1.2
3,412,500	+				-1.6
3,412,527	-				+0.2
3,412,622	-				+0.0
3,412,659	+				+0.6
3,412,659	+				+0.2
3,412,730	+				-1.1
3,412,730	+				-0.5
3,412,730	+				-0.2
3,412,730	+				+1.2
3,412,730	+				-1.6
3,412,731	-				-1.1
3,412,731	-				+0.2
3,412,731	-				-1.6
3,412,731	-				+0.0
3,412,731	-				-0.8
3,412,752	+				+1.4
3,412,752	+				+0.1
3,412,752	+				+0.0
3,412,753	-				+0.2
3,412,753	-				-0.8
3,412,753	-				-1.1
3,412,860	+		DDA3937_RS14875	0.11	-0.1
3,412,905	+		DDA3937_RS14875	0.15	-0.2
3,412,906	-		DDA3937_RS14875	0.15	-0.6
3,412,948	+		DDA3937_RS14875	0.19	-2.4
3,412,966	-		DDA3937_RS14875	0.21	-0.2