Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13425

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,061,115	-		DDA3937_RS13415	0.21	-0.3
3,061,132	+		DDA3937_RS13415	0.23	-0.1
3,061,132	+		DDA3937_RS13415	0.23	-1.5
3,061,132	+		DDA3937_RS13415	0.23	-0.6
3,061,133	-		DDA3937_RS13415	0.23	-0.8
3,061,154	+		DDA3937_RS13415	0.26	-0.4
3,061,238	+		DDA3937_RS13415	0.37	-1.4
3,061,238	+		DDA3937_RS13415	0.37	-1.2
3,061,239	-		DDA3937_RS13415	0.37	-0.9
3,061,287	+		DDA3937_RS13415	0.44	-0.8
3,061,287	+		DDA3937_RS13415	0.44	-1.0
3,061,288	-		DDA3937_RS13415	0.44	-2.4
3,061,288	-		DDA3937_RS13415	0.44	-2.2
3,061,288	-		DDA3937_RS13415	0.44	-1.4
3,061,373	+		DDA3937_RS13415	0.56	-0.6
3,061,373	+		DDA3937_RS13415	0.56	+0.2
3,061,374	-		DDA3937_RS13415	0.56	-1.4
3,061,374	-		DDA3937_RS13415	0.56	-0.1
3,061,402	+		DDA3937_RS13415	0.59	-0.5
3,061,402	+		DDA3937_RS13415	0.59	-2.0
3,061,468	+		DDA3937_RS13415	0.68	+0.4
3,061,482	+		DDA3937_RS13415	0.70	-0.4
3,061,482	+		DDA3937_RS13415	0.70	+1.0
3,061,482	+		DDA3937_RS13415	0.70	-3.2
3,061,482	+		DDA3937_RS13415	0.70	-2.0
3,061,483	-		DDA3937_RS13415	0.70	-1.7
3,061,483	-		DDA3937_RS13415	0.70	+0.6
3,061,483	-		DDA3937_RS13415	0.70	-1.4
3,061,483	-		DDA3937_RS13415	0.70	-0.5
3,061,483	-		DDA3937_RS13415	0.70	-0.3
3,061,483	-		DDA3937_RS13415	0.70	-0.8
3,061,488	-		DDA3937_RS13415	0.71	+0.2
3,061,586	+		DDA3937_RS13415	0.84	-1.4
3,061,587	-		DDA3937_RS13415	0.85	+0.6
3,061,692	+				-2.4
3,061,692	+				+0.2
3,061,692	+				+0.2
3,061,692	+				+0.3
3,061,693	-				+0.5
3,061,693	-				-3.7
3,061,694	+				-1.4
3,061,694	+				-0.1
3,061,694	+				-2.6
3,061,694	+				-1.3
3,061,695	-				-1.2
3,061,698	+				+0.5
3,061,698	+				-0.6
3,061,743	+				-0.6
3,061,744	-				-0.9
3,061,769	+				-0.6
3,061,770	-				-1.3
3,061,770	-				+0.6
3,061,775	-		DDA3937_RS13420	0.11	-1.4
3,061,775	-		DDA3937_RS13420	0.11	+0.4
3,061,790	+		DDA3937_RS13420	0.17	-1.7
3,061,791	-		DDA3937_RS13420	0.17	+0.5
3,061,846	-		DDA3937_RS13420	0.38	-1.3
3,061,969	+		DDA3937_RS13420	0.83	-0.8
3,061,969	+		DDA3937_RS13420	0.83	-0.3
3,061,969	+		DDA3937_RS13420	0.83	-0.3
3,061,969	+		DDA3937_RS13420	0.83	-0.6
3,061,969	+		DDA3937_RS13420	0.83	-2.4
3,061,969	+		DDA3937_RS13420	0.83	-0.3
3,061,970	-		DDA3937_RS13420	0.84	+0.7
3,061,970	-		DDA3937_RS13420	0.84	-0.4
3,061,971	+		DDA3937_RS13420	0.84	-0.2
3,061,971	+		DDA3937_RS13420	0.84	+0.6
3,061,971	+		DDA3937_RS13420	0.84	+0.1
3,061,971	+		DDA3937_RS13420	0.84	-0.8
3,061,972	-		DDA3937_RS13420	0.84	-0.7
3,061,972	-		DDA3937_RS13420	0.84	-0.3
3,061,972	-		DDA3937_RS13420	0.84	-0.4
3,061,972	-		DDA3937_RS13420	0.84	-0.8
3,061,972	-		DDA3937_RS13420	0.84	-1.1
3,061,972	-		DDA3937_RS13420	0.84	-0.8
3,061,972	-		DDA3937_RS13420	0.84	-1.3
3,062,012	-				-0.1
3,062,093	+				+0.7
3,062,093	+				-0.3
3,062,093	+				-0.2
3,062,093	+				-0.6
3,062,097	-		DDA3937_RS13425	0.10	-0.6
3,062,109	-		DDA3937_RS13425	0.12	-0.3
3,062,127	-		DDA3937_RS13425	0.14	-0.6
3,062,127	-		DDA3937_RS13425	0.14	-0.5
3,062,153	-		DDA3937_RS13425	0.17	-1.8
3,062,210	-		DDA3937_RS13425	0.25	-1.4
3,062,236	+		DDA3937_RS13425	0.28	+0.4
3,062,237	-		DDA3937_RS13425	0.28	-1.8
3,062,237	-		DDA3937_RS13425	0.28	-1.5
3,062,254	+		DDA3937_RS13425	0.30	+0.7
3,062,254	+		DDA3937_RS13425	0.30	-0.3
3,062,348	+		DDA3937_RS13425	0.42	-1.4
3,062,419	+		DDA3937_RS13425	0.51	-0.9
3,062,420	-		DDA3937_RS13425	0.52	-0.1
3,062,420	-		DDA3937_RS13425	0.52	-1.4
3,062,446	+		DDA3937_RS13425	0.55	-0.3
3,062,446	+		DDA3937_RS13425	0.55	-1.3
3,062,446	+		DDA3937_RS13425	0.55	-0.9
3,062,446	+		DDA3937_RS13425	0.55	-1.4
3,062,446	+		DDA3937_RS13425	0.55	-0.2
3,062,446	+		DDA3937_RS13425	0.55	-0.8
3,062,447	-		DDA3937_RS13425	0.55	-0.7
3,062,447	-		DDA3937_RS13425	0.55	-1.4
3,062,447	-		DDA3937_RS13425	0.55	-2.0
3,062,447	-		DDA3937_RS13425	0.55	-1.2
3,062,447	-		DDA3937_RS13425	0.55	-3.8
3,062,447	-		DDA3937_RS13425	0.55	-0.5
3,062,447	-		DDA3937_RS13425	0.55	-0.7
3,062,504	+		DDA3937_RS13425	0.62	+0.2
3,062,505	-		DDA3937_RS13425	0.62	-0.3
3,062,518	+		DDA3937_RS13425	0.64	-0.4
3,062,519	-		DDA3937_RS13425	0.64	-0.6
3,062,519	-		DDA3937_RS13425	0.64	-0.8
3,062,519	-		DDA3937_RS13425	0.64	-1.4
3,062,522	+		DDA3937_RS13425	0.65	+0.2
3,062,522	+		DDA3937_RS13425	0.65	-0.2
3,062,522	+		DDA3937_RS13425	0.65	+0.4
3,062,522	+		DDA3937_RS13425	0.65	-0.7
3,062,522	+		DDA3937_RS13425	0.65	-0.7
3,062,522	+		DDA3937_RS13425	0.65	-0.3
3,062,522	+		DDA3937_RS13425	0.65	-0.0
3,062,523	-		DDA3937_RS13425	0.65	-0.4
3,062,523	-		DDA3937_RS13425	0.65	-0.1
3,062,523	-		DDA3937_RS13425	0.65	-0.2
3,062,523	-		DDA3937_RS13425	0.65	-0.0
3,062,551	+		DDA3937_RS13425	0.68	+0.0
3,062,552	-		DDA3937_RS13425	0.68	-0.0
3,062,552	-		DDA3937_RS13425	0.68	-1.8
3,062,594	-		DDA3937_RS13425	0.74	-1.3
3,062,594	-		DDA3937_RS13425	0.74	-1.2
3,062,603	+		DDA3937_RS13425	0.75	-2.7
3,062,624	-		DDA3937_RS13425	0.78	-0.8
3,062,648	-		DDA3937_RS13425	0.81	-1.8
3,062,730	+				-0.1
3,062,730	+				-0.2
3,062,757	+				-0.7
3,062,758	-				+0.2
3,062,776	+				-0.5
3,062,776	+				-0.2
3,062,826	+				+0.2
3,062,852	+				+1.5
3,062,852	+				-0.2
3,062,878	+				+1.5
3,062,905	+				+0.3
3,062,905	+				+0.0
3,062,905	+				-0.8
3,062,906	-				+0.4
3,062,906	-				+0.2
3,062,906	-				-0.8
3,062,942	+				-0.6
3,062,942	+				-0.7
3,062,956	+				-0.1
3,062,976	+				-0.9
3,062,980	+				+0.2
3,062,980	+				-1.7
3,062,981	-				-1.2
3,063,027	+				-2.3
3,063,027	+				-1.7
3,063,027	+				-1.0
3,063,027	+				-0.7
3,063,028	-				-1.0
3,063,028	-				-1.2
3,063,058	+				-1.1
3,063,058	+				-0.1
3,063,058	+				-1.6
3,063,058	+				-0.4
3,063,058	+				-0.3
3,063,059	-				-2.2
3,063,060	+				-1.6
3,063,061	-				-1.3
3,063,061	-				-0.5
3,063,061	-				-0.3
3,063,061	-				-2.7
3,063,061	-				+0.2
3,063,061	-				-1.4
3,063,061	-				-1.4
3,063,061	-				-2.4
3,063,061	-				-2.4
3,063,061	-				-1.1
3,063,061	-				-1.2
3,063,127	+		DDA3937_RS13430	0.16	-0.9
3,063,127	+		DDA3937_RS13430	0.16	-1.3
3,063,127	+		DDA3937_RS13430	0.16	-2.0
3,063,128	-		DDA3937_RS13430	0.16	-1.8
3,063,128	-		DDA3937_RS13430	0.16	-3.4
3,063,128	-		DDA3937_RS13430	0.16	-3.1
3,063,245	-		DDA3937_RS13430	0.29	-0.8
3,063,245	-		DDA3937_RS13430	0.29	-1.2
3,063,245	-		DDA3937_RS13430	0.29	-0.2
3,063,359	-		DDA3937_RS13430	0.41	-2.0
3,063,363	-		DDA3937_RS13430	0.42	+0.2
3,063,430	+		DDA3937_RS13430	0.49	-1.8
3,063,441	+		DDA3937_RS13430	0.50	-0.1
3,063,441	+		DDA3937_RS13430	0.50	-2.4
3,063,441	+		DDA3937_RS13430	0.50	-3.7
3,063,441	+		DDA3937_RS13430	0.50	-3.4
3,063,441	+		DDA3937_RS13430	0.50	-2.4
3,063,441	+		DDA3937_RS13430	0.50	-2.7
3,063,441	+		DDA3937_RS13430	0.50	-1.3
3,063,441	+		DDA3937_RS13430	0.50	-0.8
3,063,441	+		DDA3937_RS13430	0.50	-1.3
3,063,441	+		DDA3937_RS13430	0.50	-0.8
3,063,441	+		DDA3937_RS13430	0.50	-1.5
3,063,441	+		DDA3937_RS13430	0.50	-2.0
3,063,442	-		DDA3937_RS13430	0.50	-1.2
3,063,442	-		DDA3937_RS13430	0.50	-1.7
3,063,467	-		DDA3937_RS13430	0.53	+0.3
3,063,469	+		DDA3937_RS13430	0.53	-2.7
3,063,469	+		DDA3937_RS13430	0.53	-2.0
3,063,469	+		DDA3937_RS13430	0.53	-1.8
3,063,470	-		DDA3937_RS13430	0.53	-0.8
3,063,508	-		DDA3937_RS13430	0.57	-1.5
3,063,526	+		DDA3937_RS13430	0.59	-0.8
3,063,527	-		DDA3937_RS13430	0.59	-1.1
3,063,607	+		DDA3937_RS13430	0.68	-0.4
3,063,620	+		DDA3937_RS13430	0.69	-0.2
3,063,621	-		DDA3937_RS13430	0.69	-2.8
3,063,683	-		DDA3937_RS13430	0.76	-2.3
3,063,683	-		DDA3937_RS13430	0.76	-2.4
3,063,688	+		DDA3937_RS13430	0.77	-1.1
3,063,720	+		DDA3937_RS13430	0.80	-1.8