Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13350

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,049,484	-		DDA3937_RS13345	0.53	-0.3
3,049,590	-		DDA3937_RS13345	0.60	-0.6
3,049,626	+		DDA3937_RS13345	0.63	-0.7
3,049,627	-		DDA3937_RS13345	0.63	-2.5
3,049,627	-		DDA3937_RS13345	0.63	-0.9
3,049,700	+		DDA3937_RS13345	0.68	+0.3
3,049,715	+		DDA3937_RS13345	0.69	-3.0
3,049,716	-				+0.1
3,049,716	-		DDA3937_RS13345	0.69	-3.0
3,049,726	+				-1.2
3,049,790	+		DDA3937_RS13345	0.74	-1.5
3,049,868	+		DDA3937_RS13345	0.80	-2.5
3,049,932	+		DDA3937_RS13345	0.84	-1.3
3,049,988	+		DDA3937_RS13345	0.88	-0.9
3,050,011	+		DDA3937_RS13345	0.89	+0.1
3,050,012	-		DDA3937_RS13345	0.89	-1.0
3,050,015	+		DDA3937_RS13345	0.90	-1.7
3,050,042	+				-1.5
3,050,043	-				-0.4
3,050,064	+				-1.5
3,050,065	-				-0.5
3,050,078	+				-1.9
3,050,079	-				-0.3
3,050,090	+				-0.8
3,050,125	-				-0.5
3,050,164	-				-0.0
3,050,167	+				+0.6
3,050,167	+				+0.5
3,050,167	+				-0.3
3,050,168	-				+0.4
3,050,172	+				+0.5
3,050,173	-				+0.9
3,050,173	-				-0.1
3,050,173	-				-0.1
3,050,182	-				+0.3
3,050,182	-				-0.4
3,050,182	-				+0.1
3,050,211	+				-0.2
3,050,211	+				+0.7
3,050,211	+				-0.5
3,050,211	+				-1.7
3,050,211	+				-0.0
3,050,212	-				-0.6
3,050,212	-				-1.1
3,050,212	-				+0.1
3,050,212	-				-0.0
3,050,212	-				-2.5
3,050,215	+				-0.7
3,050,215	+				-0.7
3,050,216	-				+0.1
3,050,216	-				-1.5
3,050,216	-				-0.6
3,050,216	-				-1.0
3,050,216	-				-2.0
3,050,221	+				-0.5
3,050,221	+				-0.9
3,050,222	-				-0.5
3,050,222	-				-1.3
3,050,222	-				+0.9
3,050,222	-				-2.3
3,050,224	+				-1.2
3,050,224	+				+0.0
3,050,225	-				+0.6
3,050,240	-				+0.3
3,050,272	+				+0.5
3,050,272	+				-0.4
3,050,273	-				-0.3
3,050,273	-				-0.2
3,050,273	-				+0.6
3,050,273	-				+0.5
3,050,275	-				-0.9
3,050,296	+				-2.4
3,050,297	-				+0.1
3,050,355	+		DDA3937_RS13350	0.21	-2.7
3,050,356	-				+0.1
3,050,460	+		DDA3937_RS13350	0.46	-1.5
3,050,461	-		DDA3937_RS13350	0.47	-0.6
3,050,461	-		DDA3937_RS13350	0.47	-1.5
3,050,467	-		DDA3937_RS13350	0.48	-0.6
3,050,467	-		DDA3937_RS13350	0.48	+0.6
3,050,539	+		DDA3937_RS13350	0.66	-1.9
3,050,540	-		DDA3937_RS13350	0.66	-1.9
3,050,540	-		DDA3937_RS13350	0.66	-0.9
3,050,569	-		DDA3937_RS13350	0.73	-1.9
3,050,572	-		DDA3937_RS13350	0.74	+0.1
3,050,575	-		DDA3937_RS13350	0.74	-1.2
3,050,620	-		DDA3937_RS13350	0.85	-1.0
3,050,620	-		DDA3937_RS13350	0.85	-0.5
3,050,701	+				-1.1
3,050,738	+		DDA3937_RS13355	0.16	-0.9
3,050,791	+		DDA3937_RS13355	0.31	+1.2
3,050,791	+		DDA3937_RS13355	0.31	-0.7
3,050,792	-		DDA3937_RS13355	0.31	-1.0
3,050,796	+		DDA3937_RS13355	0.32	-0.7
3,050,797	-		DDA3937_RS13355	0.33	-0.5
3,050,809	+		DDA3937_RS13355	0.36	-0.8
3,050,843	+		DDA3937_RS13355	0.45	+0.5
3,050,864	-		DDA3937_RS13355	0.51	-0.8
3,050,891	-		DDA3937_RS13355	0.58	+0.1
3,050,995	-		DDA3937_RS13355	0.87	-0.2
3,050,995	-		DDA3937_RS13355	0.87	+1.4
3,050,995	-				+0.5
3,050,995	-		DDA3937_RS13355	0.87	-0.0
3,051,014	+				+0.7
3,051,015	-				+0.5
3,051,059	+				-1.4
3,051,059	+				-0.4
3,051,060	-				+0.1
3,051,092	+				-1.5
3,051,125	+				+0.3
3,051,156	+				+1.1
3,051,157	-				-0.9
3,051,158	+				-0.9
3,051,168	+				+0.1
3,051,201	+				-0.3
3,051,201	+				+0.1
3,051,202	-				-0.9
3,051,202	-				-0.1
3,051,227	+				-0.1
3,051,235	+				-0.3
3,051,235	+				+0.4
3,051,235	+				+0.3
3,051,235	+				+1.5
3,051,236	-				-1.9
3,051,236	-				-0.1
3,051,268	+		DDA3937_RS13360	0.14	+0.8
3,051,268	+		DDA3937_RS13360	0.14	-0.9
3,051,268	+		DDA3937_RS13360	0.14	-0.0
3,051,269	-		DDA3937_RS13360	0.14	-2.2
3,051,272	-		DDA3937_RS13360	0.15	-0.1
3,051,512	+				-0.4
3,051,532	+				-2.3
3,051,533	-				-1.0
3,051,533	-				+0.4
3,051,533	-				-0.2
3,051,590	+				-0.1
3,051,590	+				+0.4
3,051,591	-				+0.1
3,051,596	+				-0.3
3,051,596	+				-0.6
3,051,597	-				-1.5
3,051,597	-				+0.1
3,051,600	+				-0.9
3,051,600	+				-0.3
3,051,600	+				-0.3
3,051,600	+				+0.1
3,051,601	-				+0.1
3,051,601	-				+1.3
3,051,601	-				+1.0
3,051,603	-				-0.1
3,051,603	-				-0.2
3,051,619	-				-0.0
3,051,637	-				-0.0
3,051,645	+				-0.4
3,051,645	+				-0.3
3,051,645	+				+0.1
3,051,645	+				+0.2
3,051,645	+				-0.0
3,051,645	+				-0.2
3,051,646	-				-0.4
3,051,646	-				+2.1
3,051,646	-				+0.0
3,051,646	-				+0.3
3,051,646	-				+0.6
3,051,667	-				+1.5
3,051,676	+				-2.2