Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12390

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,818,583	+		DDA3937_RS12385	0.32	+0.1
2,818,584	-		DDA3937_RS12385	0.32	+0.6
2,818,617	+		DDA3937_RS12385	0.36	-2.3
2,818,617	+		DDA3937_RS12385	0.36	-0.2
2,818,617	+		DDA3937_RS12385	0.36	+1.0
2,818,617	+		DDA3937_RS12385	0.36	-1.4
2,818,617	+		DDA3937_RS12385	0.36	-0.2
2,818,617	+		DDA3937_RS12385	0.36	+0.6
2,818,618	-		DDA3937_RS12385	0.36	+0.4
2,818,618	-		DDA3937_RS12385	0.36	+0.8
2,818,618	-		DDA3937_RS12385	0.36	+1.6
2,818,618	-		DDA3937_RS12385	0.36	+0.2
2,818,618	-		DDA3937_RS12385	0.36	-1.1
2,818,619	+		DDA3937_RS12385	0.36	-0.4
2,818,619	+		DDA3937_RS12385	0.36	+0.3
2,818,619	+		DDA3937_RS12385	0.36	+0.6
2,818,619	+		DDA3937_RS12385	0.36	-0.3
2,818,619	+		DDA3937_RS12385	0.36	-0.6
2,818,620	-		DDA3937_RS12385	0.36	+0.5
2,818,620	-		DDA3937_RS12385	0.36	+0.5
2,818,620	-		DDA3937_RS12385	0.36	-0.7
2,818,620	-		DDA3937_RS12385	0.36	-0.6
2,818,620	-		DDA3937_RS12385	0.36	-0.8
2,818,620	-		DDA3937_RS12385	0.36	-0.2
2,818,620	-		DDA3937_RS12385	0.36	-0.9
2,818,620	-		DDA3937_RS12385	0.36	-0.2
2,818,706	+		DDA3937_RS12385	0.46	+1.3
2,818,817	-		DDA3937_RS12385	0.58	+0.0
2,818,919	+		DDA3937_RS12385	0.70	-0.3
2,818,919	+		DDA3937_RS12385	0.70	+0.2
2,818,941	-		DDA3937_RS12385	0.72	+0.5
2,818,941	-		DDA3937_RS12385	0.72	-0.3
2,818,941	-		DDA3937_RS12385	0.72	+0.6
2,818,970	+		DDA3937_RS12385	0.75	+1.3
2,818,971	-		DDA3937_RS12385	0.75	-0.8
2,818,974	+		DDA3937_RS12385	0.76	-0.3
2,818,975	-		DDA3937_RS12385	0.76	+0.6
2,819,026	-		DDA3937_RS12385	0.82	-0.3
2,819,026	-		DDA3937_RS12385	0.82	+0.5
2,819,053	-		DDA3937_RS12385	0.85	-0.0
2,819,053	-		DDA3937_RS12385	0.85	-0.1
2,819,053	-		DDA3937_RS12385	0.85	-0.0
2,819,053	-		DDA3937_RS12385	0.85	-0.5
2,819,070	+		DDA3937_RS12385	0.86	-0.1
2,819,091	+		DDA3937_RS12385	0.89	-1.5
2,819,091	+		DDA3937_RS12385	0.89	-0.6
2,819,091	+		DDA3937_RS12385	0.89	-1.6
2,819,092	-		DDA3937_RS12385	0.89	-0.4
2,819,119	+				-0.0
2,819,119	+				+0.8
2,819,122	+				-0.3
2,819,159	+				-1.2
2,819,189	-				-0.8
2,819,382	+				-1.4
2,819,382	+				-0.6
2,819,382	+				-0.0
2,819,383	-				-0.2
2,819,383	-				-0.6
2,819,383	-				-0.0
2,819,383	-				+0.5
2,819,383	-				-0.0
2,819,383	-				+0.5
2,819,383	-				-0.0
2,819,389	-				-1.1
2,819,506	-				-0.0
2,819,565	-				-1.0
2,819,565	-				-0.4
2,819,573	+				+0.2
2,819,729	+		DDA3937_RS12390	0.18	-2.3
2,819,771	+		DDA3937_RS12390	0.20	+0.1
2,819,787	+		DDA3937_RS12390	0.21	-0.8
2,819,930	+		DDA3937_RS12390	0.31	-0.6
2,819,931	-		DDA3937_RS12390	0.31	-0.8
2,819,931	-		DDA3937_RS12390	0.31	-1.8
2,820,194	+				+0.6
2,820,194	+		DDA3937_RS12390	0.47	+0.6
2,820,331	+		DDA3937_RS12390	0.56	+0.5
2,820,405	+		DDA3937_RS12390	0.61	-1.0
2,820,406	-		DDA3937_RS12390	0.61	-0.7
2,820,463	+		DDA3937_RS12390	0.65	-1.5
2,820,464	-		DDA3937_RS12390	0.65	+1.6
2,820,572	-		DDA3937_RS12390	0.72	-0.0
2,820,623	+		DDA3937_RS12390	0.75	-1.0
2,820,624	-		DDA3937_RS12390	0.75	-0.7
2,820,802	-		DDA3937_RS12390	0.86	-0.9
2,820,802	-		DDA3937_RS12390	0.86	-2.5
2,820,802	-		DDA3937_RS12390	0.86	-1.0
2,820,888	+				-1.6
2,820,943	-				+1.1
2,821,003	+				-1.6
2,821,003	+				+0.2
2,821,021	+				-0.4
2,821,066	-				+0.2
2,821,066	-				+0.1
2,821,137	+				-0.0
2,821,137	+				-0.0
2,821,138	-				-0.0
2,821,206	+				-0.3
2,821,206	+				-0.0
2,821,207	-				-2.3
2,821,207	-				+1.0
2,821,239	+				-0.0
2,821,239	+				-0.8
2,821,246	+				+0.5
2,821,246	+				-1.0
2,821,246	+				-0.0
2,821,247	-				-0.0
2,821,247	-				-0.2
2,821,247	-				-1.4
2,821,247	-				-0.4
2,821,247	-				-0.2
2,821,310	-		DDA3937_RS12395	0.11	+0.6
2,821,310	-		DDA3937_RS12395	0.11	+1.1
2,821,480	+		DDA3937_RS12395	0.22	-0.7
2,821,480	+		DDA3937_RS12395	0.22	-0.3
2,821,481	-				-2.0
2,821,519	-		DDA3937_RS12395	0.25	-0.1
2,821,519	-		DDA3937_RS12395	0.25	-0.7
2,821,535	+		DDA3937_RS12395	0.26	+0.5
2,821,540	-		DDA3937_RS12395	0.26	+0.2
2,821,557	+		DDA3937_RS12395	0.27	-0.5
2,821,557	+		DDA3937_RS12395	0.27	-1.8
2,821,557	+		DDA3937_RS12395	0.27	-0.8
2,821,558	-		DDA3937_RS12395	0.27	-0.0
2,821,558	-		DDA3937_RS12395	0.27	-1.0
2,821,558	-		DDA3937_RS12395	0.27	-0.8
2,821,558	-		DDA3937_RS12395	0.27	+0.7
2,821,558	-		DDA3937_RS12395	0.27	-0.4
2,821,563	+		DDA3937_RS12395	0.27	+0.2
2,821,563	+		DDA3937_RS12395	0.27	+0.6
2,821,564	-		DDA3937_RS12395	0.27	-1.3
2,821,588	+		DDA3937_RS12395	0.29	-0.3
2,821,595	-		DDA3937_RS12395	0.29	-0.3
2,821,597	+		DDA3937_RS12395	0.30	-0.4
2,821,597	+		DDA3937_RS12395	0.30	-0.7
2,821,597	+		DDA3937_RS12395	0.30	-0.6
2,821,597	+				-1.6
2,821,597	+		DDA3937_RS12395	0.30	-0.2
2,821,597	+				-1.4
2,821,597	+		DDA3937_RS12395	0.30	+0.2
2,821,598	-		DDA3937_RS12395	0.30	+0.5
2,821,598	-		DDA3937_RS12395	0.30	-0.0
2,821,629	+		DDA3937_RS12395	0.32	-1.7
2,821,629	+		DDA3937_RS12395	0.32	-1.5
2,821,629	+		DDA3937_RS12395	0.32	+0.5
2,821,629	+		DDA3937_RS12395	0.32	-0.8
2,821,629	+		DDA3937_RS12395	0.32	+0.4
2,821,629	+		DDA3937_RS12395	0.32	-0.9
2,821,630	-		DDA3937_RS12395	0.32	-1.8
2,821,630	-		DDA3937_RS12395	0.32	-0.9
2,821,630	-		DDA3937_RS12395	0.32	-0.8
2,821,630	-		DDA3937_RS12395	0.32	+1.0
2,821,821	+		DDA3937_RS12395	0.44	-0.1
2,821,822	-		DDA3937_RS12395	0.44	-0.1
2,822,002	+		DDA3937_RS12395	0.56	-0.6
2,822,002	+		DDA3937_RS12395	0.56	-0.1
2,822,002	+		DDA3937_RS12395	0.56	-1.4
2,822,002	+		DDA3937_RS12395	0.56	+1.0
2,822,003	-		DDA3937_RS12395	0.56	+1.0
2,822,005	+		DDA3937_RS12395	0.56	+1.6
2,822,006	-		DDA3937_RS12395	0.56	-0.1