Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS12005 and DDA3937_RS23215 are separated by 154 nucleotides DDA3937_RS23215 and DDA3937_RS12010 overlap by 4 nucleotides DDA3937_RS12010 and DDA3937_RS12015 are separated by 119 nucleotides DDA3937_RS12015 and DDA3937_RS12020 overlap by 1 nucleotides DDA3937_RS12020 and DDA3937_RS12025 are separated by 96 nucleotides
DDA3937_RS12005: DDA3937_RS12005 - helix-turn-helix domain-containing protein, at 2,733,074 to 2,733,886
_RS12005
DDA3937_RS23215: DDA3937_RS23215 - hypothetical protein, at 2,734,041 to 2,734,511
_RS23215
DDA3937_RS12010: DDA3937_RS12010 - hypothetical protein, at 2,734,508 to 2,735,056
_RS12010
DDA3937_RS12015: DDA3937_RS12015 - DUF2732 family protein, at 2,735,176 to 2,735,391
_RS12015
DDA3937_RS12020: DDA3937_RS12020 - TraR/DksA family transcriptional regulator, at 2,735,391 to 2,735,615
_RS12020
DDA3937_RS12025: DDA3937_RS12025 - replication endonuclease, at 2,735,712 to 2,737,838
_RS12025
Position (kb)
2734
2735
2736 Strain fitness (log2 ratio)
-1
0
1 at 2734.033 kb on - strand at 2734.033 kb on - strand at 2734.033 kb on - strand at 2734.033 kb on - strand at 2734.033 kb on - strand at 2734.033 kb on - strand at 2734.041 kb on - strand at 2734.063 kb on + strand at 2734.155 kb on - strand, within DDA3937_RS23215 at 2734.171 kb on + strand, within DDA3937_RS23215 at 2734.201 kb on + strand, within DDA3937_RS23215 at 2734.201 kb on + strand, within DDA3937_RS23215 at 2734.203 kb on + strand, within DDA3937_RS23215 at 2734.203 kb on + strand, within DDA3937_RS23215 at 2734.203 kb on + strand, within DDA3937_RS23215 at 2734.203 kb on + strand, within DDA3937_RS23215 at 2734.204 kb on - strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.205 kb on + strand, within DDA3937_RS23215 at 2734.383 kb on + strand, within DDA3937_RS23215 at 2734.427 kb on + strand, within DDA3937_RS23215 at 2734.427 kb on + strand, within DDA3937_RS23215 at 2734.428 kb on - strand, within DDA3937_RS23215 at 2734.494 kb on - strand at 2734.520 kb on + strand at 2734.521 kb on - strand at 2734.521 kb on - strand at 2734.694 kb on + strand, within DDA3937_RS12010 at 2734.695 kb on - strand, within DDA3937_RS12010 at 2734.759 kb on + strand, within DDA3937_RS12010 at 2734.760 kb on - strand, within DDA3937_RS12010 at 2735.010 kb on - strand at 2735.028 kb on - strand at 2735.028 kb on - strand at 2735.160 kb on - strand at 2735.160 kb on - strand at 2735.226 kb on + strand, within DDA3937_RS12015 at 2735.267 kb on - strand, within DDA3937_RS12015 at 2735.267 kb on - strand, within DDA3937_RS12015 at 2735.268 kb on + strand, within DDA3937_RS12015 at 2735.269 kb on - strand, within DDA3937_RS12015 at 2735.402 kb on + strand at 2735.402 kb on + strand at 2735.693 kb on - strand at 2735.696 kb on + strand at 2735.697 kb on - strand at 2735.766 kb on + strand at 2735.767 kb on - strand at 2735.849 kb on - strand at 2735.854 kb on - strand at 2735.949 kb on + strand, within DDA3937_RS12025 at 2735.949 kb on + strand, within DDA3937_RS12025 at 2735.950 kb on - strand, within DDA3937_RS12025 at 2735.950 kb on - strand, within DDA3937_RS12025 at 2736.029 kb on - strand, within DDA3937_RS12025
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,734,033 - -0.0 2,734,033 - -0.6 2,734,033 - -0.5 2,734,033 - +0.4 2,734,033 - -0.5 2,734,033 - -0.5 2,734,041 - +0.9 2,734,063 + +0.4 2,734,155 - DDA3937_RS23215 0.24 -0.1 2,734,171 + DDA3937_RS23215 0.28 +1.4 2,734,201 + DDA3937_RS23215 0.34 -0.5 2,734,201 + DDA3937_RS23215 0.34 -0.1 2,734,203 + DDA3937_RS23215 0.34 -0.1 2,734,203 + DDA3937_RS23215 0.34 -0.8 2,734,203 + DDA3937_RS23215 0.34 +0.8 2,734,203 + DDA3937_RS23215 0.34 -0.1 2,734,204 - DDA3937_RS23215 0.35 +0.0 2,734,205 + DDA3937_RS23215 0.35 -0.3 2,734,205 + DDA3937_RS23215 0.35 +0.5 2,734,205 + DDA3937_RS23215 0.35 -0.6 2,734,205 + DDA3937_RS23215 0.35 -0.7 2,734,205 + DDA3937_RS23215 0.35 +0.3 2,734,205 + DDA3937_RS23215 0.35 -1.7 2,734,205 + DDA3937_RS23215 0.35 +0.3 2,734,205 + DDA3937_RS23215 0.35 -1.3 2,734,205 + DDA3937_RS23215 0.35 -0.1 2,734,205 + DDA3937_RS23215 0.35 -0.4 2,734,383 + DDA3937_RS23215 0.73 +1.1 2,734,427 + DDA3937_RS23215 0.82 +0.1 2,734,427 + DDA3937_RS23215 0.82 -0.1 2,734,428 - DDA3937_RS23215 0.82 +0.1 2,734,494 - +0.6 2,734,520 + -0.1 2,734,521 - +0.2 2,734,521 - +0.8 2,734,694 + DDA3937_RS12010 0.34 -0.1 2,734,695 - DDA3937_RS12010 0.34 -0.7 2,734,759 + DDA3937_RS12010 0.46 -0.7 2,734,760 - DDA3937_RS12010 0.46 -0.8 2,735,010 - +0.4 2,735,028 - -0.3 2,735,028 - -0.4 2,735,160 - -0.4 2,735,160 - -1.0 2,735,226 + DDA3937_RS12015 0.23 -1.1 2,735,267 - DDA3937_RS12015 0.42 -1.7 2,735,267 - DDA3937_RS12015 0.42 +0.5 2,735,268 + DDA3937_RS12015 0.43 +1.7 2,735,269 - DDA3937_RS12015 0.43 -0.1 2,735,402 + +0.8 2,735,402 + -1.1 2,735,693 - +0.4 2,735,696 + +0.3 2,735,697 - -1.7 2,735,766 + +0.8 2,735,767 - -0.5 2,735,849 - -0.7 2,735,854 - -0.6 2,735,949 + DDA3937_RS12025 0.11 +1.2 2,735,949 + DDA3937_RS12025 0.11 -0.3 2,735,950 - DDA3937_RS12025 0.11 -0.5 2,735,950 - DDA3937_RS12025 0.11 +1.4 2,736,029 - DDA3937_RS12025 0.15 +0.2
Or see this region's nucleotide sequence