Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11205

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,546,377	-		DDA3937_RS11195	0.72	-0.6
2,546,472	+		DDA3937_RS11195	0.87	-0.6
2,546,472	+		DDA3937_RS11195	0.87	+0.6
2,546,472	+		DDA3937_RS11195	0.87	-0.1
2,546,472	+		DDA3937_RS11195	0.87	-0.1
2,546,472	+		DDA3937_RS11195	0.87	-0.5
2,546,473	-		DDA3937_RS11195	0.87	+0.3
2,546,473	-		DDA3937_RS11195	0.87	-0.1
2,546,473	-		DDA3937_RS11195	0.87	+0.8
2,546,473	-		DDA3937_RS11195	0.87	-0.1
2,546,473	-		DDA3937_RS11195	0.87	-0.5
2,546,473	-		DDA3937_RS11195	0.87	-0.1
2,546,483	+		DDA3937_RS11195	0.88	-0.5
2,546,484	-		DDA3937_RS11195	0.88	-0.8
2,546,484	-		DDA3937_RS11195	0.88	-0.5
2,546,484	-		DDA3937_RS11195	0.88	-0.7
2,546,500	+				-0.9
2,546,500	+				-0.2
2,546,501	-				-0.1
2,546,501	-				-0.7
2,546,501	-				-0.5
2,546,503	+				-1.3
2,546,503	+				+0.3
2,546,503	+				-0.7
2,546,503	+				+0.4
2,546,504	-				-1.1
2,546,504	-				-1.7
2,546,509	-				+0.3
2,546,527	+				-0.5
2,546,555	+				-0.1
2,546,555	+				-0.7
2,546,555	+				-0.9
2,546,555	+				-0.2
2,546,555	+				-1.8
2,546,555	+				-1.7
2,546,556	-				+0.1
2,546,556	-				+0.1
2,546,556	-				-0.6
2,546,556	-				+0.7
2,546,556	-				-0.4
2,546,556	-				+0.9
2,546,561	+				-0.5
2,546,561	+				-0.4
2,546,562	-				+0.5
2,546,562	-				-0.9
2,546,562	-				+0.8
2,546,562	-				+0.1
2,546,562	-				-0.9
2,546,562	-				+0.5
2,546,562	-				+0.9
2,546,562	-				-0.6
2,546,725	+				-0.9
2,546,726	-				-1.4
2,546,747	+				-1.1
2,546,772	+				+1.0
2,546,777	-				+0.1
2,546,794	+				-1.1
2,546,795	-				+0.0
2,546,795	-				+1.2
2,546,838	+				-0.7
2,546,855	+				+0.4
2,546,873	-				+0.3
2,546,914	+				-0.2
2,546,914	+				-0.7
2,546,945	+				-0.1
2,547,159	+		DDA3937_RS11200	0.82	-0.7
2,547,159	+		DDA3937_RS11200	0.82	+0.5
2,547,159	+		DDA3937_RS11200	0.82	-0.8
2,547,159	+		DDA3937_RS11200	0.82	-0.9
2,547,160	-		DDA3937_RS11200	0.82	+0.2
2,547,165	+				-1.1
2,547,166	-		DDA3937_RS11200	0.84	-0.2
2,547,166	-		DDA3937_RS11200	0.84	-0.7
2,547,166	-		DDA3937_RS11200	0.84	+0.4
2,547,192	+				-1.3
2,547,204	+				-0.9
2,547,204	+				-0.9
2,547,204	+				+0.6
2,547,205	-				-0.6
2,547,205	-				+0.9
2,547,205	-				-1.5
2,547,205	-				+0.0
2,547,205	-				+0.8
2,547,205	-				-2.1
2,547,261	+				-1.1
2,547,261	+				-0.9
2,547,261	+				+0.2
2,547,261	+				-1.7
2,547,262	-				-0.1
2,547,262	-				+0.5
2,547,262	-				+0.5
2,547,262	-				-0.4
2,547,263	+				-0.4
2,547,264	-				-1.1
2,547,264	-				-0.7
2,547,264	-				+0.7
2,547,287	+				+2.2
2,547,287	+				-0.4
2,547,297	+				+1.6
2,547,318	-				-1.1
2,547,318	-				-1.1
2,547,362	-				-1.0
2,547,362	-				-0.6
2,547,425	+		DDA3937_RS11205	0.11	+0.4
2,547,426	-		DDA3937_RS11205	0.11	-1.4
2,547,531	-		DDA3937_RS11205	0.26	-1.1
2,547,548	+		DDA3937_RS11205	0.28	-0.0
2,547,607	+		DDA3937_RS11205	0.37	-0.1
2,547,608	-		DDA3937_RS11205	0.37	+0.2
2,547,608	-		DDA3937_RS11205	0.37	-2.7
2,547,608	-		DDA3937_RS11205	0.37	-2.1
2,547,608	-		DDA3937_RS11205	0.37	-1.1
2,547,608	-		DDA3937_RS11205	0.37	+0.0
2,547,637	+		DDA3937_RS11205	0.41	+0.2
2,547,638	-		DDA3937_RS11205	0.41	-2.7
2,547,662	+		DDA3937_RS11205	0.44	-0.6
2,547,662	+		DDA3937_RS11205	0.44	-0.3
2,547,668	-		DDA3937_RS11205	0.45	-0.1
2,547,744	-		DDA3937_RS11205	0.56	-1.4
2,547,744	-		DDA3937_RS11205	0.56	-1.1
2,547,744	-		DDA3937_RS11205	0.56	-0.6
2,547,744	-				-1.1
2,547,791	+		DDA3937_RS11205	0.62	-3.3
2,547,792	-		DDA3937_RS11205	0.63	-1.5
2,547,848	+		DDA3937_RS11205	0.70	+1.3
2,547,848	+		DDA3937_RS11205	0.70	-0.1
2,547,849	-		DDA3937_RS11205	0.71	-1.5
2,548,042	+				+1.2
2,548,042	+				-0.7
2,548,043	-				+0.1
2,548,043	-				-0.7
2,548,056	+				-1.7
2,548,057	-				-1.7
2,548,074	+				+0.9
2,548,079	-				-1.1
2,548,099	+				-0.6
2,548,099	+				+0.1
2,548,099	+				-1.1
2,548,100	-				-0.1
2,548,100	-				-0.6
2,548,108	+				+0.0
2,548,109	-				-1.8
2,548,250	+		DDA3937_RS11210	0.21	-1.7
2,548,250	+		DDA3937_RS11210	0.21	-0.4
2,548,250	+				-1.1
2,548,309	+		DDA3937_RS11210	0.28	-0.7
2,548,328	+		DDA3937_RS11210	0.31	-0.3
2,548,329	-		DDA3937_RS11210	0.31	-1.1
2,548,329	-		DDA3937_RS11210	0.31	-1.1
2,548,331	-		DDA3937_RS11210	0.31	-2.2
2,548,479	-		DDA3937_RS11210	0.49	-2.1
2,548,479	-		DDA3937_RS11210	0.49	-0.7
2,548,625	+				-2.1
2,548,794	-		DDA3937_RS11210	0.88	-0.4