Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10580

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,379,979	+				+0.7
2,379,980	-				-1.1
2,379,980	-				-0.3
2,380,014	+				-0.7
2,380,126	+				+1.2
2,380,160	+		DDA3937_RS10575	0.30	+0.7
2,380,160	+		DDA3937_RS10575	0.30	+0.8
2,380,160	+		DDA3937_RS10575	0.30	+0.3
2,380,160	+		DDA3937_RS10575	0.30	-0.2
2,380,161	-		DDA3937_RS10575	0.30	+1.3
2,380,161	-		DDA3937_RS10575	0.30	-1.2
2,380,201	-		DDA3937_RS10575	0.37	+0.9
2,380,201	-		DDA3937_RS10575	0.37	+0.3
2,380,382	+		DDA3937_RS10575	0.68	+0.5
2,380,382	+		DDA3937_RS10575	0.68	+0.7
2,380,382	+				+0.7
2,380,382	+		DDA3937_RS10575	0.68	+1.4
2,380,383	-		DDA3937_RS10575	0.68	-0.5
2,380,383	-		DDA3937_RS10575	0.68	-0.8
2,380,383	-		DDA3937_RS10575	0.68	-0.6
2,380,383	-		DDA3937_RS10575	0.68	+1.1
2,380,492	+		DDA3937_RS10575	0.87	+0.3
2,380,556	+				+0.2
2,380,557	-				+0.3
2,380,568	-				+0.8
2,380,568	-				-2.4
2,380,584	-				-0.2
2,380,584	-				-0.4
2,380,584	-				-0.3
2,380,584	-				+0.2
2,380,626	+				+0.4
2,380,626	+				+0.3
2,380,627	-				-1.0
2,380,627	-				+0.4
2,380,627	-				-0.8
2,380,636	-				-0.3
2,380,642	-				-0.3
2,380,642	-				-2.4
2,380,672	-				-0.1
2,380,678	+				-0.4
2,380,678	+				+0.6
2,380,693	+				-0.1
2,380,693	+				-0.2
2,380,693	+				-1.0
2,380,694	-				-0.6
2,380,694	-				-0.3
2,380,701	+				-0.1
2,380,703	+				-0.9
2,380,704	-				-1.8
2,380,704	-				-1.1
2,380,718	+				-0.1
2,380,797	+				-1.7
2,380,800	+				+1.3
2,380,800	+				+0.4
2,380,801	-				-0.9
2,380,801	-				-1.4
2,380,801	-				-2.7
2,380,801	-				-0.6
2,380,823	+				-0.9
2,380,824	-				-0.0
2,380,824	-				-0.7
2,380,942	+		DDA3937_RS10580	0.45	-1.1
2,380,942	+		DDA3937_RS10580	0.45	-1.7
2,380,946	+		DDA3937_RS10580	0.47	-1.1
2,380,946	+		DDA3937_RS10580	0.47	-1.2
2,380,947	-		DDA3937_RS10580	0.47	-1.9
2,380,947	-		DDA3937_RS10580	0.47	-0.7
2,381,019	-		DDA3937_RS10580	0.81	-0.1
2,381,050	+				-0.9
2,381,071	+				-0.7
2,381,149	+				+1.4
2,381,149	+				+0.4
2,381,149	+				+0.9
2,381,152	-				+1.1
2,381,154	+				+0.0
2,381,178	-				+1.5
2,381,318	-				-2.7
2,381,385	+				+1.0
2,381,388	+				+0.5
2,381,416	-				+0.3
2,381,473	+				+2.1
2,381,502	+				-0.0
2,381,502	+				-0.3
2,381,503	-				-0.8
2,381,507	+				-0.4
2,381,507	+				-0.7
2,381,508	-				+0.1
2,381,583	-				-0.3
2,381,583	-				-1.7
2,381,583	-				-0.1
2,381,585	+				-0.1
2,381,585	+				+0.4
2,381,586	-				+0.1
2,381,609	+				-0.9
2,381,610	-				+0.3
2,381,610	-				+0.2
2,381,613	-				-0.5
2,381,702	+				+0.1
2,381,703	-				+0.6
2,381,715	-				-0.0
2,381,736	+		DDA3937_RS10585	0.10	+0.2
2,381,745	+		DDA3937_RS10585	0.11	-1.1
2,381,746	-				+0.7
2,381,987	+		DDA3937_RS10585	0.27	+0.7
2,381,987	+		DDA3937_RS10585	0.27	-1.1
2,381,987	+		DDA3937_RS10585	0.27	+0.0
2,381,987	+		DDA3937_RS10585	0.27	+1.4
2,381,987	+		DDA3937_RS10585	0.27	-0.4
2,381,987	+		DDA3937_RS10585	0.27	+0.1
2,381,988	-		DDA3937_RS10585	0.27	-0.3
2,381,988	-		DDA3937_RS10585	0.27	+1.1
2,382,045	+		DDA3937_RS10585	0.30	-0.3
2,382,046	-		DDA3937_RS10585	0.31	+0.4
2,382,046	-		DDA3937_RS10585	0.31	+0.1