Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08705

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08700 and DDA3937_RS08705 are separated by 3 nucleotidesDDA3937_RS08705 and DDA3937_RS08710 are separated by 114 nucleotides DDA3937_RS08700: DDA3937_RS08700 - helix-turn-helix domain-containing protein, at 1,963,939 to 1,964,814 _RS08700 DDA3937_RS08705: DDA3937_RS08705 - peptidase T, at 1,964,818 to 1,966,047 _RS08705 DDA3937_RS08710: DDA3937_RS08710 - ABC transporter substrate-binding protein, at 1,966,162 to 1,967,757 _RS08710 Position (kb) 1964 1965 1966 1967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1963.899 kb on + strandat 1963.900 kb on - strandat 1963.900 kb on - strandat 1963.900 kb on - strandat 1963.949 kb on - strandat 1963.964 kb on + strandat 1963.964 kb on + strandat 1963.965 kb on - strandat 1963.965 kb on - strandat 1963.967 kb on + strandat 1963.967 kb on + strandat 1963.967 kb on + strandat 1963.968 kb on - strandat 1963.968 kb on - strandat 1963.968 kb on - strandat 1963.968 kb on - strandat 1963.968 kb on - strandat 1963.968 kb on - strandat 1963.975 kb on + strandat 1963.975 kb on + strandat 1963.977 kb on + strandat 1963.978 kb on - strandat 1963.978 kb on - strandat 1963.978 kb on - strandat 1964.010 kb on + strandat 1964.092 kb on + strand, within DDA3937_RS08700at 1964.092 kb on + strand, within DDA3937_RS08700at 1964.092 kb on + strand, within DDA3937_RS08700at 1964.092 kb on + strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.093 kb on - strand, within DDA3937_RS08700at 1964.116 kb on + strand, within DDA3937_RS08700at 1964.117 kb on - strand, within DDA3937_RS08700at 1964.117 kb on - strand, within DDA3937_RS08700at 1964.202 kb on + strand, within DDA3937_RS08700at 1964.233 kb on + strand, within DDA3937_RS08700at 1964.233 kb on + strand, within DDA3937_RS08700at 1964.234 kb on - strand, within DDA3937_RS08700at 1964.239 kb on - strand, within DDA3937_RS08700at 1964.313 kb on + strand, within DDA3937_RS08700at 1964.314 kb on - strand, within DDA3937_RS08700at 1964.314 kb on - strand, within DDA3937_RS08700at 1964.348 kb on - strand, within DDA3937_RS08700at 1964.433 kb on + strand, within DDA3937_RS08700at 1964.433 kb on + strand, within DDA3937_RS08700at 1964.434 kb on - strand, within DDA3937_RS08700at 1964.446 kb on + strand, within DDA3937_RS08700at 1964.449 kb on - strand, within DDA3937_RS08700at 1964.449 kb on - strand, within DDA3937_RS08700at 1964.449 kb on - strand, within DDA3937_RS08700at 1964.513 kb on + strand, within DDA3937_RS08700at 1964.514 kb on - strand, within DDA3937_RS08700at 1964.550 kb on + strand, within DDA3937_RS08700at 1964.550 kb on + strand, within DDA3937_RS08700at 1964.550 kb on + strand, within DDA3937_RS08700at 1964.583 kb on + strand, within DDA3937_RS08700at 1964.584 kb on - strand, within DDA3937_RS08700at 1964.641 kb on + strand, within DDA3937_RS08700at 1964.641 kb on + strand, within DDA3937_RS08700at 1964.641 kb on + strand, within DDA3937_RS08700at 1964.641 kb on + strand, within DDA3937_RS08700at 1964.641 kb on + strand, within DDA3937_RS08700at 1964.641 kb on + strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.642 kb on - strand, within DDA3937_RS08700at 1964.858 kb on + strandat 1964.859 kb on - strandat 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.083 kb on + strand, within DDA3937_RS08705at 1965.084 kb on - strand, within DDA3937_RS08705at 1965.084 kb on - strand, within DDA3937_RS08705at 1965.084 kb on - strand, within DDA3937_RS08705at 1965.087 kb on + strand, within DDA3937_RS08705at 1965.154 kb on + strand, within DDA3937_RS08705at 1965.155 kb on - strand, within DDA3937_RS08705at 1965.155 kb on - strand, within DDA3937_RS08705at 1965.165 kb on + strand, within DDA3937_RS08705at 1965.258 kb on - strand, within DDA3937_RS08705at 1965.422 kb on + strand, within DDA3937_RS08705at 1965.422 kb on + strand, within DDA3937_RS08705at 1965.423 kb on - strand, within DDA3937_RS08705at 1965.423 kb on - strandat 1965.459 kb on - strand, within DDA3937_RS08705at 1965.508 kb on + strand, within DDA3937_RS08705at 1965.651 kb on + strand, within DDA3937_RS08705at 1965.652 kb on - strand, within DDA3937_RS08705at 1966.039 kb on - strandat 1966.059 kb on - strandat 1966.071 kb on + strandat 1966.100 kb on + strandat 1966.100 kb on + strandat 1966.101 kb on - strandat 1966.243 kb on + strandat 1966.243 kb on + strandat 1966.244 kb on - strandat 1966.272 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.285 kb on + strandat 1966.286 kb on - strandat 1966.286 kb on - strandat 1966.286 kb on - strandat 1966.286 kb on - strandat 1966.286 kb on - strandat 1966.286 kb on - strandat 1966.286 kb on - strandat 1966.287 kb on + strandat 1966.288 kb on - strandat 1966.288 kb on - strandat 1966.288 kb on - strandat 1966.327 kb on + strand, within DDA3937_RS08710at 1966.327 kb on + strand, within DDA3937_RS08710at 1966.328 kb on - strand, within DDA3937_RS08710at 1966.328 kb on - strand, within DDA3937_RS08710at 1966.328 kb on - strand, within DDA3937_RS08710at 1966.328 kb on - strand, within DDA3937_RS08710at 1966.411 kb on - strand, within DDA3937_RS08710at 1966.418 kb on - strand, within DDA3937_RS08710at 1966.418 kb on - strand, within DDA3937_RS08710at 1966.434 kb on + strand, within DDA3937_RS08710at 1966.550 kb on + strand, within DDA3937_RS08710at 1966.564 kb on + strand, within DDA3937_RS08710at 1966.565 kb on - strand, within DDA3937_RS08710at 1966.565 kb on - strand, within DDA3937_RS08710at 1966.687 kb on + strand, within DDA3937_RS08710at 1966.822 kb on + strand, within DDA3937_RS08710at 1966.822 kb on + strand, within DDA3937_RS08710at 1966.823 kb on - strand, within DDA3937_RS08710at 1966.841 kb on - strand, within DDA3937_RS08710at 1967.019 kb on + strand, within DDA3937_RS08710at 1967.019 kb on + strand, within DDA3937_RS08710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,963,899 + -0.7
1,963,900 - +0.4
1,963,900 - +0.0
1,963,900 - +0.4
1,963,949 - -1.6
1,963,964 + -0.2
1,963,964 + -1.4
1,963,965 - -0.8
1,963,965 - -0.5
1,963,967 + -0.4
1,963,967 + -1.7
1,963,967 + +0.6
1,963,968 - +0.3
1,963,968 - +0.7
1,963,968 - +0.9
1,963,968 - -0.2
1,963,968 - -0.6
1,963,968 - -0.5
1,963,975 + -0.9
1,963,975 + +0.1
1,963,977 + +0.0
1,963,978 - +0.8
1,963,978 - -0.3
1,963,978 - -1.8
1,964,010 + -0.0
1,964,092 + DDA3937_RS08700 0.17 +0.4
1,964,092 + DDA3937_RS08700 0.17 -1.6
1,964,092 + DDA3937_RS08700 0.17 +0.0
1,964,092 + DDA3937_RS08700 0.17 +0.3
1,964,093 - DDA3937_RS08700 0.18 +0.0
1,964,093 - DDA3937_RS08700 0.18 +0.1
1,964,093 - DDA3937_RS08700 0.18 +0.2
1,964,093 - DDA3937_RS08700 0.18 -1.3
1,964,093 - DDA3937_RS08700 0.18 +1.2
1,964,093 - DDA3937_RS08700 0.18 -2.8
1,964,093 - DDA3937_RS08700 0.18 +0.4
1,964,116 + DDA3937_RS08700 0.20 +0.1
1,964,117 - DDA3937_RS08700 0.20 -0.8
1,964,117 - DDA3937_RS08700 0.20 +0.8
1,964,202 + DDA3937_RS08700 0.30 +0.4
1,964,233 + DDA3937_RS08700 0.34 +0.9
1,964,233 + DDA3937_RS08700 0.34 +0.6
1,964,234 - DDA3937_RS08700 0.34 +0.7
1,964,239 - DDA3937_RS08700 0.34 -1.0
1,964,313 + DDA3937_RS08700 0.43 -0.4
1,964,314 - DDA3937_RS08700 0.43 +1.0
1,964,314 - DDA3937_RS08700 0.43 +0.4
1,964,348 - DDA3937_RS08700 0.47 +0.8
1,964,433 + DDA3937_RS08700 0.56 -0.6
1,964,433 + DDA3937_RS08700 0.56 -0.9
1,964,434 - DDA3937_RS08700 0.57 +1.2
1,964,446 + DDA3937_RS08700 0.58 -1.3
1,964,449 - DDA3937_RS08700 0.58 -0.7
1,964,449 - DDA3937_RS08700 0.58 +0.2
1,964,449 - DDA3937_RS08700 0.58 -1.3
1,964,513 + DDA3937_RS08700 0.66 -0.5
1,964,514 - DDA3937_RS08700 0.66 -0.5
1,964,550 + DDA3937_RS08700 0.70 +0.8
1,964,550 + DDA3937_RS08700 0.70 +0.1
1,964,550 + DDA3937_RS08700 0.70 +0.3
1,964,583 + DDA3937_RS08700 0.74 -1.6
1,964,584 - DDA3937_RS08700 0.74 -0.6
1,964,641 + DDA3937_RS08700 0.80 +0.8
1,964,641 + DDA3937_RS08700 0.80 +0.7
1,964,641 + DDA3937_RS08700 0.80 +1.3
1,964,641 + DDA3937_RS08700 0.80 +0.1
1,964,641 + DDA3937_RS08700 0.80 -1.0
1,964,641 + DDA3937_RS08700 0.80 -0.6
1,964,642 - DDA3937_RS08700 0.80 +0.1
1,964,642 - DDA3937_RS08700 0.80 -0.6
1,964,642 - DDA3937_RS08700 0.80 -0.4
1,964,642 - DDA3937_RS08700 0.80 -0.2
1,964,642 - DDA3937_RS08700 0.80 -0.0
1,964,642 - DDA3937_RS08700 0.80 +0.6
1,964,642 - DDA3937_RS08700 0.80 -0.2
1,964,642 - DDA3937_RS08700 0.80 +0.5
1,964,858 + +0.2
1,964,859 - -1.2
1,965,083 + DDA3937_RS08705 0.22 +0.3
1,965,083 + DDA3937_RS08705 0.22 -0.6
1,965,083 + DDA3937_RS08705 0.22 -0.2
1,965,083 + DDA3937_RS08705 0.22 +0.5
1,965,083 + DDA3937_RS08705 0.22 +0.9
1,965,083 + DDA3937_RS08705 0.22 -0.0
1,965,083 + DDA3937_RS08705 0.22 +0.2
1,965,083 + DDA3937_RS08705 0.22 -0.4
1,965,083 + DDA3937_RS08705 0.22 +0.6
1,965,084 - DDA3937_RS08705 0.22 +1.5
1,965,084 - DDA3937_RS08705 0.22 +0.8
1,965,084 - DDA3937_RS08705 0.22 -0.5
1,965,087 + DDA3937_RS08705 0.22 -0.7
1,965,154 + DDA3937_RS08705 0.27 +0.7
1,965,155 - DDA3937_RS08705 0.27 +1.2
1,965,155 - DDA3937_RS08705 0.27 -0.6
1,965,165 + DDA3937_RS08705 0.28 +0.5
1,965,258 - DDA3937_RS08705 0.36 +1.3
1,965,422 + DDA3937_RS08705 0.49 -0.5
1,965,422 + DDA3937_RS08705 0.49 +0.0
1,965,423 - DDA3937_RS08705 0.49 -2.0
1,965,423 - +2.0
1,965,459 - DDA3937_RS08705 0.52 -0.4
1,965,508 + DDA3937_RS08705 0.56 +0.5
1,965,651 + DDA3937_RS08705 0.68 +0.3
1,965,652 - DDA3937_RS08705 0.68 -0.1
1,966,039 - +0.5
1,966,059 - +0.3
1,966,071 + +0.4
1,966,100 + +0.0
1,966,100 + +0.1
1,966,101 - -0.7
1,966,243 + +0.6
1,966,243 + -1.6
1,966,244 - -1.0
1,966,272 + +0.5
1,966,285 + -0.3
1,966,285 + +0.4
1,966,285 + -1.0
1,966,285 + +0.2
1,966,285 + +0.8
1,966,285 + -0.3
1,966,285 + +0.1
1,966,285 + +0.4
1,966,285 + +0.4
1,966,285 + -1.2
1,966,285 + +0.0
1,966,286 - +0.0
1,966,286 - +0.5
1,966,286 - +0.4
1,966,286 - -0.6
1,966,286 - +0.5
1,966,286 - -1.0
1,966,286 - +0.2
1,966,287 + -1.0
1,966,288 - -1.4
1,966,288 - -1.2
1,966,288 - -0.8
1,966,327 + DDA3937_RS08710 0.10 +0.0
1,966,327 + DDA3937_RS08710 0.10 +0.6
1,966,328 - DDA3937_RS08710 0.10 +1.2
1,966,328 - DDA3937_RS08710 0.10 -1.7
1,966,328 - DDA3937_RS08710 0.10 +0.5
1,966,328 - DDA3937_RS08710 0.10 -2.6
1,966,411 - DDA3937_RS08710 0.16 +0.0
1,966,418 - DDA3937_RS08710 0.16 +0.3
1,966,418 - DDA3937_RS08710 0.16 -1.6
1,966,434 + DDA3937_RS08710 0.17 +0.0
1,966,550 + DDA3937_RS08710 0.24 -0.1
1,966,564 + DDA3937_RS08710 0.25 -0.2
1,966,565 - DDA3937_RS08710 0.25 +0.4
1,966,565 - DDA3937_RS08710 0.25 -0.6
1,966,687 + DDA3937_RS08710 0.33 -1.4
1,966,822 + DDA3937_RS08710 0.41 -0.8
1,966,822 + DDA3937_RS08710 0.41 -0.0
1,966,823 - DDA3937_RS08710 0.41 -1.3
1,966,841 - DDA3937_RS08710 0.43 +0.3
1,967,019 + DDA3937_RS08710 0.54 +0.3
1,967,019 + DDA3937_RS08710 0.54 -0.6

Or see this region's nucleotide sequence