Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08480

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08475 and DDA3937_RS08480 are separated by 218 nucleotidesDDA3937_RS08480 and DDA3937_RS08485 are separated by 281 nucleotides DDA3937_RS08475: DDA3937_RS08475 - molybdopterin molybdotransferase MoeA, at 1,914,117 to 1,915,352 _RS08475 DDA3937_RS08480: DDA3937_RS08480 - NAD-dependent malic enzyme, at 1,915,571 to 1,917,268 _RS08480 DDA3937_RS08485: DDA3937_RS08485 - cytidine deaminase, at 1,917,550 to 1,918,437 _RS08485 Position (kb) 1915 1916 1917 1918Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1914.577 kb on + strand, within DDA3937_RS08475at 1914.578 kb on - strand, within DDA3937_RS08475at 1914.703 kb on + strand, within DDA3937_RS08475at 1914.704 kb on - strand, within DDA3937_RS08475at 1914.874 kb on - strand, within DDA3937_RS08475at 1915.259 kb on - strandat 1915.335 kb on + strandat 1915.335 kb on + strandat 1915.335 kb on + strandat 1915.335 kb on + strandat 1915.335 kb on + strandat 1915.336 kb on - strandat 1915.346 kb on + strandat 1915.346 kb on + strandat 1915.346 kb on + strandat 1915.346 kb on + strandat 1915.347 kb on - strandat 1915.347 kb on - strandat 1915.347 kb on - strandat 1915.402 kb on + strandat 1915.402 kb on + strandat 1915.402 kb on + strandat 1915.402 kb on + strandat 1915.403 kb on - strandat 1915.403 kb on - strandat 1915.403 kb on - strandat 1915.406 kb on + strandat 1915.406 kb on + strandat 1915.407 kb on - strandat 1915.407 kb on - strandat 1915.407 kb on - strandat 1915.417 kb on + strandat 1915.417 kb on + strandat 1915.433 kb on - strandat 1915.433 kb on - strandat 1915.436 kb on + strandat 1915.436 kb on + strandat 1915.437 kb on - strandat 1915.437 kb on - strandat 1915.437 kb on - strandat 1915.437 kb on - strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.438 kb on + strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.439 kb on - strandat 1915.449 kb on + strandat 1915.449 kb on + strandat 1915.449 kb on + strandat 1915.532 kb on + strandat 1915.550 kb on + strandat 1915.582 kb on + strandat 1915.582 kb on + strandat 1915.582 kb on + strandat 1915.582 kb on + strandat 1915.582 kb on + strandat 1915.583 kb on - strandat 1915.583 kb on - strandat 1915.583 kb on - strandat 1915.590 kb on + strandat 1915.590 kb on + strandat 1915.590 kb on + strandat 1915.590 kb on + strandat 1915.590 kb on + strandat 1915.600 kb on - strandat 1915.635 kb on - strandat 1915.635 kb on - strandat 1915.847 kb on + strand, within DDA3937_RS08480at 1915.875 kb on + strand, within DDA3937_RS08480at 1915.922 kb on + strand, within DDA3937_RS08480at 1916.137 kb on + strandat 1916.598 kb on + strand, within DDA3937_RS08480at 1916.598 kb on + strand, within DDA3937_RS08480at 1916.598 kb on + strand, within DDA3937_RS08480at 1916.598 kb on + strand, within DDA3937_RS08480at 1916.599 kb on - strand, within DDA3937_RS08480at 1916.599 kb on - strand, within DDA3937_RS08480at 1916.641 kb on - strand, within DDA3937_RS08480at 1916.641 kb on - strand, within DDA3937_RS08480at 1916.641 kb on - strand, within DDA3937_RS08480at 1916.641 kb on - strand, within DDA3937_RS08480at 1916.733 kb on + strandat 1916.733 kb on + strand, within DDA3937_RS08480at 1916.734 kb on - strand, within DDA3937_RS08480at 1916.746 kb on + strand, within DDA3937_RS08480at 1916.792 kb on + strand, within DDA3937_RS08480at 1916.792 kb on + strand, within DDA3937_RS08480at 1916.792 kb on + strand, within DDA3937_RS08480at 1916.797 kb on + strand, within DDA3937_RS08480at 1916.797 kb on + strand, within DDA3937_RS08480at 1916.797 kb on + strand, within DDA3937_RS08480at 1916.797 kb on + strand, within DDA3937_RS08480at 1916.797 kb on + strand, within DDA3937_RS08480at 1916.798 kb on - strand, within DDA3937_RS08480at 1916.798 kb on - strand, within DDA3937_RS08480at 1916.866 kb on + strand, within DDA3937_RS08480at 1916.890 kb on + strand, within DDA3937_RS08480at 1916.891 kb on - strandat 1916.891 kb on - strand, within DDA3937_RS08480at 1916.913 kb on + strand, within DDA3937_RS08480at 1916.914 kb on - strand, within DDA3937_RS08480at 1916.914 kb on - strandat 1916.932 kb on - strand, within DDA3937_RS08480at 1916.958 kb on + strand, within DDA3937_RS08480at 1917.003 kb on + strand, within DDA3937_RS08480at 1917.035 kb on - strand, within DDA3937_RS08480at 1917.043 kb on - strand, within DDA3937_RS08480at 1917.043 kb on - strand, within DDA3937_RS08480at 1917.078 kb on + strand, within DDA3937_RS08480at 1917.233 kb on - strandat 1917.234 kb on + strandat 1917.234 kb on + strandat 1917.234 kb on + strandat 1917.235 kb on - strandat 1917.235 kb on - strandat 1917.235 kb on - strandat 1917.248 kb on - strandat 1917.322 kb on - strandat 1917.338 kb on + strandat 1917.338 kb on + strandat 1917.338 kb on + strandat 1917.339 kb on - strandat 1917.339 kb on - strandat 1917.343 kb on + strandat 1917.354 kb on + strandat 1917.355 kb on - strandat 1917.358 kb on + strandat 1917.358 kb on + strandat 1917.380 kb on - strandat 1917.383 kb on + strandat 1917.383 kb on + strandat 1917.383 kb on + strandat 1917.383 kb on + strandat 1917.383 kb on + strandat 1917.383 kb on + strandat 1917.383 kb on + strandat 1917.384 kb on - strandat 1917.384 kb on - strandat 1917.399 kb on - strandat 1917.407 kb on + strandat 1917.425 kb on + strandat 1917.426 kb on - strandat 1917.426 kb on - strandat 1917.472 kb on + strandat 1917.472 kb on + strandat 1917.473 kb on - strandat 1917.524 kb on - strandat 1917.580 kb on - strandat 1917.895 kb on - strand, within DDA3937_RS08485at 1917.960 kb on - strand, within DDA3937_RS08485at 1917.999 kb on + strand, within DDA3937_RS08485at 1918.000 kb on - strand, within DDA3937_RS08485at 1918.000 kb on - strand, within DDA3937_RS08485at 1918.000 kb on - strand, within DDA3937_RS08485at 1918.061 kb on + strand, within DDA3937_RS08485at 1918.061 kb on + strand, within DDA3937_RS08485at 1918.061 kb on + strand, within DDA3937_RS08485at 1918.061 kb on + strand, within DDA3937_RS08485at 1918.061 kb on + strand, within DDA3937_RS08485at 1918.062 kb on - strand, within DDA3937_RS08485at 1918.062 kb on - strand, within DDA3937_RS08485at 1918.062 kb on - strand, within DDA3937_RS08485at 1918.171 kb on - strand, within DDA3937_RS08485at 1918.184 kb on + strand, within DDA3937_RS08485at 1918.184 kb on + strand, within DDA3937_RS08485at 1918.184 kb on + strand, within DDA3937_RS08485at 1918.185 kb on - strand, within DDA3937_RS08485at 1918.211 kb on - strand, within DDA3937_RS08485at 1918.211 kb on - strand, within DDA3937_RS08485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,914,577 + DDA3937_RS08475 0.37 -1.4
1,914,578 - DDA3937_RS08475 0.37 +0.2
1,914,703 + DDA3937_RS08475 0.47 +0.3
1,914,704 - DDA3937_RS08475 0.47 -1.0
1,914,874 - DDA3937_RS08475 0.61 +0.3
1,915,259 - -0.1
1,915,335 + +0.1
1,915,335 + -1.6
1,915,335 + +0.6
1,915,335 + -0.0
1,915,335 + -0.1
1,915,336 - -1.0
1,915,346 + -1.0
1,915,346 + +0.8
1,915,346 + +0.0
1,915,346 + -0.1
1,915,347 - +0.4
1,915,347 - -0.4
1,915,347 - -1.6
1,915,402 + -0.4
1,915,402 + +0.5
1,915,402 + -1.0
1,915,402 + -0.8
1,915,403 - +0.5
1,915,403 - +0.1
1,915,403 - -0.0
1,915,406 + -1.0
1,915,406 + -1.0
1,915,407 - +0.0
1,915,407 - -1.2
1,915,407 - -0.0
1,915,417 + -1.0
1,915,417 + -0.6
1,915,433 - -1.1
1,915,433 - +1.0
1,915,436 + -0.4
1,915,436 + -0.6
1,915,437 - -0.5
1,915,437 - -0.4
1,915,437 - +0.6
1,915,437 - +0.3
1,915,438 + +0.8
1,915,438 + -1.2
1,915,438 + +0.5
1,915,438 + -1.4
1,915,438 + +0.4
1,915,438 + -0.6
1,915,438 + +0.5
1,915,438 + +1.0
1,915,438 + -1.0
1,915,438 + -0.5
1,915,439 - -0.0
1,915,439 - -0.2
1,915,439 - -1.0
1,915,439 - -0.1
1,915,439 - -0.2
1,915,439 - -0.1
1,915,439 - -0.4
1,915,439 - -0.7
1,915,439 - -0.8
1,915,449 + -0.8
1,915,449 + +1.8
1,915,449 + +0.0
1,915,532 + -1.5
1,915,550 + +0.2
1,915,582 + -0.2
1,915,582 + -0.3
1,915,582 + -0.8
1,915,582 + +0.4
1,915,582 + -0.8
1,915,583 - +0.0
1,915,583 - +0.4
1,915,583 - -1.0
1,915,590 + -1.8
1,915,590 + -2.1
1,915,590 + -0.2
1,915,590 + -0.2
1,915,590 + -2.0
1,915,600 - +0.3
1,915,635 - +0.4
1,915,635 - -1.6
1,915,847 + DDA3937_RS08480 0.16 -1.2
1,915,875 + DDA3937_RS08480 0.18 -2.8
1,915,922 + DDA3937_RS08480 0.21 -0.5
1,916,137 + -0.4
1,916,598 + DDA3937_RS08480 0.60 -1.0
1,916,598 + DDA3937_RS08480 0.60 +0.4
1,916,598 + DDA3937_RS08480 0.60 -0.2
1,916,598 + DDA3937_RS08480 0.60 -1.3
1,916,599 - DDA3937_RS08480 0.61 -3.1
1,916,599 - DDA3937_RS08480 0.61 -0.8
1,916,641 - DDA3937_RS08480 0.63 +0.0
1,916,641 - DDA3937_RS08480 0.63 +0.0
1,916,641 - DDA3937_RS08480 0.63 +1.0
1,916,641 - DDA3937_RS08480 0.63 +0.4
1,916,733 + +0.0
1,916,733 + DDA3937_RS08480 0.68 -2.3
1,916,734 - DDA3937_RS08480 0.68 -2.6
1,916,746 + DDA3937_RS08480 0.69 -1.0
1,916,792 + DDA3937_RS08480 0.72 -2.0
1,916,792 + DDA3937_RS08480 0.72 -0.3
1,916,792 + DDA3937_RS08480 0.72 +0.2
1,916,797 + DDA3937_RS08480 0.72 -2.0
1,916,797 + DDA3937_RS08480 0.72 -0.7
1,916,797 + DDA3937_RS08480 0.72 -0.6
1,916,797 + DDA3937_RS08480 0.72 +0.2
1,916,797 + DDA3937_RS08480 0.72 -0.7
1,916,798 - DDA3937_RS08480 0.72 -0.8
1,916,798 - DDA3937_RS08480 0.72 -2.1
1,916,866 + DDA3937_RS08480 0.76 -1.0
1,916,890 + DDA3937_RS08480 0.78 +0.0
1,916,891 - +2.2
1,916,891 - DDA3937_RS08480 0.78 -1.0
1,916,913 + DDA3937_RS08480 0.79 -1.7
1,916,914 - DDA3937_RS08480 0.79 +0.0
1,916,914 - -1.3
1,916,932 - DDA3937_RS08480 0.80 +0.8
1,916,958 + DDA3937_RS08480 0.82 -0.6
1,917,003 + DDA3937_RS08480 0.84 +0.0
1,917,035 - DDA3937_RS08480 0.86 -1.0
1,917,043 - DDA3937_RS08480 0.87 +0.0
1,917,043 - DDA3937_RS08480 0.87 -0.9
1,917,078 + DDA3937_RS08480 0.89 -0.9
1,917,233 - +0.5
1,917,234 + +0.0
1,917,234 + +0.7
1,917,234 + +0.4
1,917,235 - -0.2
1,917,235 - -2.2
1,917,235 - -0.8
1,917,248 - -0.2
1,917,322 - -1.5
1,917,338 + -0.6
1,917,338 + -3.7
1,917,338 + -0.7
1,917,339 - -0.3
1,917,339 - +0.8
1,917,343 + -0.4
1,917,354 + -3.0
1,917,355 - +1.4
1,917,358 + -0.5
1,917,358 + -0.1
1,917,380 - -0.6
1,917,383 + +0.4
1,917,383 + -0.0
1,917,383 + +0.7
1,917,383 + +2.2
1,917,383 + -0.6
1,917,383 + -0.7
1,917,383 + -0.3
1,917,384 - -0.2
1,917,384 - -2.0
1,917,399 - -0.6
1,917,407 + +2.4
1,917,425 + -2.3
1,917,426 - -0.3
1,917,426 - +0.2
1,917,472 + -0.2
1,917,472 + +0.1
1,917,473 - -2.0
1,917,524 - -0.6
1,917,580 - +0.6
1,917,895 - DDA3937_RS08485 0.39 -0.7
1,917,960 - DDA3937_RS08485 0.46 +0.3
1,917,999 + DDA3937_RS08485 0.51 -1.0
1,918,000 - DDA3937_RS08485 0.51 -1.0
1,918,000 - DDA3937_RS08485 0.51 +0.5
1,918,000 - DDA3937_RS08485 0.51 +0.6
1,918,061 + DDA3937_RS08485 0.58 +0.4
1,918,061 + DDA3937_RS08485 0.58 -0.1
1,918,061 + DDA3937_RS08485 0.58 -0.6
1,918,061 + DDA3937_RS08485 0.58 +0.2
1,918,061 + DDA3937_RS08485 0.58 +0.0
1,918,062 - DDA3937_RS08485 0.58 +1.3
1,918,062 - DDA3937_RS08485 0.58 -0.3
1,918,062 - DDA3937_RS08485 0.58 +1.0
1,918,171 - DDA3937_RS08485 0.70 -1.6
1,918,184 + DDA3937_RS08485 0.71 -0.5
1,918,184 + DDA3937_RS08485 0.71 +0.5
1,918,184 + DDA3937_RS08485 0.71 +0.6
1,918,185 - DDA3937_RS08485 0.72 +0.3
1,918,211 - DDA3937_RS08485 0.74 +1.0
1,918,211 - DDA3937_RS08485 0.74 -0.3

Or see this region's nucleotide sequence