Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08370 and DDA3937_RS08375 are separated by 584 nucleotides DDA3937_RS08375 and DDA3937_RS08380 are separated by 525 nucleotides
DDA3937_RS08370: DDA3937_RS08370 - IS30 family transposase, at 1,894,358 to 1,895,517
_RS08370
DDA3937_RS08375: DDA3937_RS08375 - radical SAM protein, at 1,896,102 to 1,897,529
_RS08375
DDA3937_RS08380: DDA3937_RS08380 - IS110 family transposase, at 1,898,055 to 1,898,747
_RS08380
Position (kb)
1896
1897
1898 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1895.102 kb on - strand, within DDA3937_RS08370 at 1895.102 kb on - strand, within DDA3937_RS08370 at 1895.110 kb on - strand, within DDA3937_RS08370 at 1895.139 kb on + strand, within DDA3937_RS08370 at 1895.140 kb on - strand, within DDA3937_RS08370 at 1895.178 kb on + strand, within DDA3937_RS08370 at 1895.180 kb on + strand, within DDA3937_RS08370 at 1895.180 kb on + strand, within DDA3937_RS08370 at 1895.180 kb on + strand, within DDA3937_RS08370 at 1895.181 kb on - strand at 1895.181 kb on - strand, within DDA3937_RS08370 at 1895.181 kb on - strand at 1895.181 kb on - strand, within DDA3937_RS08370 at 1895.181 kb on - strand, within DDA3937_RS08370 at 1895.224 kb on + strand, within DDA3937_RS08370 at 1895.225 kb on - strand, within DDA3937_RS08370 at 1895.225 kb on - strand, within DDA3937_RS08370 at 1895.226 kb on + strand, within DDA3937_RS08370 at 1895.227 kb on - strand, within DDA3937_RS08370 at 1895.277 kb on + strand, within DDA3937_RS08370 at 1895.282 kb on + strand, within DDA3937_RS08370 at 1895.282 kb on + strand, within DDA3937_RS08370 at 1895.282 kb on + strand, within DDA3937_RS08370 at 1895.283 kb on - strand, within DDA3937_RS08370 at 1895.350 kb on - strand, within DDA3937_RS08370 at 1895.350 kb on - strand, within DDA3937_RS08370 at 1895.361 kb on - strand, within DDA3937_RS08370 at 1895.363 kb on + strand, within DDA3937_RS08370 at 1895.363 kb on + strand, within DDA3937_RS08370 at 1895.363 kb on + strand, within DDA3937_RS08370 at 1895.363 kb on + strand, within DDA3937_RS08370 at 1895.364 kb on - strand, within DDA3937_RS08370 at 1895.371 kb on + strand, within DDA3937_RS08370 at 1895.372 kb on - strand, within DDA3937_RS08370 at 1895.393 kb on + strand, within DDA3937_RS08370 at 1895.417 kb on + strand at 1895.531 kb on - strand at 1895.541 kb on + strand at 1895.597 kb on + strand at 1895.598 kb on - strand at 1895.598 kb on - strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.601 kb on + strand at 1895.602 kb on - strand at 1895.602 kb on - strand at 1895.602 kb on - strand at 1895.602 kb on - strand at 1895.602 kb on - strand at 1895.633 kb on + strand at 1895.633 kb on + strand at 1895.633 kb on + strand at 1895.633 kb on + strand at 1895.633 kb on + strand at 1895.633 kb on + strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.634 kb on - strand at 1895.682 kb on + strand at 1895.682 kb on + strand at 1895.769 kb on - strand at 1895.838 kb on + strand at 1895.838 kb on + strand at 1895.839 kb on - strand at 1895.871 kb on + strand at 1895.871 kb on + strand at 1895.872 kb on - strand at 1895.872 kb on - strand at 1895.876 kb on + strand at 1895.879 kb on + strand at 1895.879 kb on + strand at 1895.901 kb on - strand at 1895.903 kb on + strand at 1895.903 kb on + strand at 1895.903 kb on + strand at 1895.907 kb on + strand at 1895.907 kb on + strand at 1895.908 kb on - strand at 1895.908 kb on - strand at 1895.908 kb on - strand at 1895.914 kb on + strand at 1895.950 kb on + strand at 1895.951 kb on - strand at 1895.951 kb on - strand at 1895.951 kb on - strand at 1895.951 kb on - strand at 1895.970 kb on + strand at 1895.976 kb on + strand at 1895.976 kb on + strand at 1895.977 kb on - strand at 1896.041 kb on - strand at 1896.078 kb on + strand at 1896.081 kb on - strand at 1896.178 kb on - strand at 1896.178 kb on - strand at 1896.254 kb on + strand, within DDA3937_RS08375 at 1896.442 kb on + strand, within DDA3937_RS08375 at 1896.467 kb on - strand, within DDA3937_RS08375 at 1896.633 kb on - strand, within DDA3937_RS08375 at 1896.677 kb on + strand, within DDA3937_RS08375 at 1896.678 kb on - strand, within DDA3937_RS08375 at 1896.727 kb on + strand, within DDA3937_RS08375 at 1896.731 kb on - strand, within DDA3937_RS08375 at 1896.773 kb on + strand, within DDA3937_RS08375 at 1896.922 kb on + strand, within DDA3937_RS08375 at 1897.024 kb on - strand, within DDA3937_RS08375 at 1897.024 kb on - strand, within DDA3937_RS08375 at 1897.234 kb on + strand, within DDA3937_RS08375 at 1897.416 kb on - strand at 1897.497 kb on - strand at 1897.527 kb on + strand at 1897.527 kb on + strand at 1897.528 kb on - strand at 1897.653 kb on + strand at 1897.654 kb on - strand at 1897.677 kb on + strand at 1897.677 kb on + strand at 1897.678 kb on - strand at 1897.678 kb on - strand at 1897.734 kb on - strand at 1897.734 kb on - strand at 1897.749 kb on + strand at 1897.749 kb on + strand at 1897.749 kb on + strand at 1897.749 kb on + strand at 1897.749 kb on + strand at 1897.749 kb on + strand at 1897.750 kb on - strand at 1897.750 kb on - strand at 1897.750 kb on - strand at 1897.824 kb on + strand at 1897.824 kb on + strand at 1897.824 kb on + strand at 1897.825 kb on - strand at 1897.825 kb on - strand at 1897.826 kb on + strand at 1897.826 kb on + strand at 1897.848 kb on + strand at 1897.856 kb on + strand at 1897.878 kb on + strand at 1897.892 kb on - strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.943 kb on + strand at 1897.944 kb on - strand at 1897.944 kb on - strand at 1897.944 kb on - strand at 1897.944 kb on - strand at 1897.969 kb on - strand at 1897.969 kb on - strand at 1897.998 kb on - strand at 1898.000 kb on - strand at 1898.065 kb on + strand at 1898.066 kb on - strand at 1898.066 kb on - strand at 1898.168 kb on + strand, within DDA3937_RS08380 at 1898.168 kb on + strand, within DDA3937_RS08380 at 1898.169 kb on - strand, within DDA3937_RS08380 at 1898.169 kb on - strand, within DDA3937_RS08380 at 1898.187 kb on - strand, within DDA3937_RS08380 at 1898.187 kb on - strand, within DDA3937_RS08380 at 1898.187 kb on - strand, within DDA3937_RS08380 at 1898.187 kb on - strand, within DDA3937_RS08380 at 1898.265 kb on + strand, within DDA3937_RS08380 at 1898.265 kb on + strand, within DDA3937_RS08380 at 1898.265 kb on + strand, within DDA3937_RS08380 at 1898.265 kb on + strand, within DDA3937_RS08380 at 1898.265 kb on + strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.266 kb on - strand, within DDA3937_RS08380 at 1898.383 kb on + strand, within DDA3937_RS08380 at 1898.384 kb on - strand, within DDA3937_RS08380 at 1898.384 kb on - strand, within DDA3937_RS08380 at 1898.390 kb on - strand, within DDA3937_RS08380 at 1898.390 kb on - strand, within DDA3937_RS08380 at 1898.390 kb on - strand, within DDA3937_RS08380 at 1898.395 kb on + strand, within DDA3937_RS08380 at 1898.395 kb on + strand, within DDA3937_RS08380 at 1898.395 kb on + strand, within DDA3937_RS08380 at 1898.395 kb on + strand at 1898.395 kb on + strand, within DDA3937_RS08380 at 1898.396 kb on - strand, within DDA3937_RS08380 at 1898.396 kb on - strand, within DDA3937_RS08380 at 1898.396 kb on - strand, within DDA3937_RS08380 at 1898.396 kb on - strand at 1898.396 kb on - strand, within DDA3937_RS08380 at 1898.396 kb on - strand, within DDA3937_RS08380 at 1898.402 kb on - strand, within DDA3937_RS08380 at 1898.402 kb on - strand, within DDA3937_RS08380 at 1898.428 kb on + strand, within DDA3937_RS08380 at 1898.428 kb on + strand, within DDA3937_RS08380 at 1898.429 kb on - strand, within DDA3937_RS08380 at 1898.467 kb on + strand, within DDA3937_RS08380 at 1898.467 kb on + strand, within DDA3937_RS08380 at 1898.467 kb on + strand, within DDA3937_RS08380 at 1898.468 kb on - strand, within DDA3937_RS08380 at 1898.468 kb on - strand, within DDA3937_RS08380 at 1898.468 kb on - strand, within DDA3937_RS08380 at 1898.468 kb on - strand, within DDA3937_RS08380 at 1898.514 kb on - strand, within DDA3937_RS08380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,895,102 - DDA3937_RS08370 0.64 -1.7 1,895,102 - DDA3937_RS08370 0.64 -0.2 1,895,110 - DDA3937_RS08370 0.65 -0.4 1,895,139 + DDA3937_RS08370 0.67 -0.9 1,895,140 - DDA3937_RS08370 0.67 -0.4 1,895,178 + DDA3937_RS08370 0.71 -0.6 1,895,180 + DDA3937_RS08370 0.71 -0.1 1,895,180 + DDA3937_RS08370 0.71 -0.8 1,895,180 + DDA3937_RS08370 0.71 +1.1 1,895,181 - +0.0 1,895,181 - DDA3937_RS08370 0.71 -1.6 1,895,181 - +0.0 1,895,181 - DDA3937_RS08370 0.71 -0.3 1,895,181 - DDA3937_RS08370 0.71 -0.7 1,895,224 + DDA3937_RS08370 0.75 +0.5 1,895,225 - DDA3937_RS08370 0.75 -0.6 1,895,225 - DDA3937_RS08370 0.75 -0.4 1,895,226 + DDA3937_RS08370 0.75 -0.2 1,895,227 - DDA3937_RS08370 0.75 -1.3 1,895,277 + DDA3937_RS08370 0.79 -1.0 1,895,282 + DDA3937_RS08370 0.80 -0.3 1,895,282 + DDA3937_RS08370 0.80 -0.2 1,895,282 + DDA3937_RS08370 0.80 -0.6 1,895,283 - DDA3937_RS08370 0.80 +0.0 1,895,350 - DDA3937_RS08370 0.86 +0.0 1,895,350 - DDA3937_RS08370 0.86 -0.3 1,895,361 - DDA3937_RS08370 0.86 +0.5 1,895,363 + DDA3937_RS08370 0.87 -0.4 1,895,363 + DDA3937_RS08370 0.87 -1.3 1,895,363 + DDA3937_RS08370 0.87 -0.2 1,895,363 + DDA3937_RS08370 0.87 +0.3 1,895,364 - DDA3937_RS08370 0.87 -1.6 1,895,371 + DDA3937_RS08370 0.87 -1.3 1,895,372 - DDA3937_RS08370 0.87 -2.3 1,895,393 + DDA3937_RS08370 0.89 -1.1 1,895,417 + -0.7 1,895,531 - +0.4 1,895,541 + -0.8 1,895,597 + +0.0 1,895,598 - +0.2 1,895,598 - +1.1 1,895,601 + +0.2 1,895,601 + +0.0 1,895,601 + -1.2 1,895,601 + +0.6 1,895,601 + -0.1 1,895,601 + +0.0 1,895,601 + +0.2 1,895,601 + +0.6 1,895,601 + -1.5 1,895,601 + -0.0 1,895,602 - +0.1 1,895,602 - +0.0 1,895,602 - -0.1 1,895,602 - +0.0 1,895,602 - +0.8 1,895,633 + +0.2 1,895,633 + +0.3 1,895,633 + +0.0 1,895,633 + -0.7 1,895,633 + -0.6 1,895,633 + -0.3 1,895,634 - -0.4 1,895,634 - +0.9 1,895,634 - -1.6 1,895,634 - -0.3 1,895,634 - +0.0 1,895,634 - +0.6 1,895,634 - -0.7 1,895,634 - +1.3 1,895,634 - -0.7 1,895,634 - -0.3 1,895,682 + -0.3 1,895,682 + -0.4 1,895,769 - +0.1 1,895,838 + -0.4 1,895,838 + +1.5 1,895,839 - +1.0 1,895,871 + -1.0 1,895,871 + -0.7 1,895,872 - -0.8 1,895,872 - +0.3 1,895,876 + +0.6 1,895,879 + +0.1 1,895,879 + +0.4 1,895,901 - +1.3 1,895,903 + +1.1 1,895,903 + -0.1 1,895,903 + +0.0 1,895,907 + +0.7 1,895,907 + +0.0 1,895,908 - -0.3 1,895,908 - +0.9 1,895,908 - -0.6 1,895,914 + -0.3 1,895,950 + +1.4 1,895,951 - -0.2 1,895,951 - -0.1 1,895,951 - -0.7 1,895,951 - -0.6 1,895,970 + -0.5 1,895,976 + -0.7 1,895,976 + +0.0 1,895,977 - +0.0 1,896,041 - +0.3 1,896,078 + -0.1 1,896,081 - -0.4 1,896,178 - +0.0 1,896,178 - -1.1 1,896,254 + DDA3937_RS08375 0.11 -0.5 1,896,442 + DDA3937_RS08375 0.24 -0.9 1,896,467 - DDA3937_RS08375 0.26 +0.0 1,896,633 - DDA3937_RS08375 0.37 -1.1 1,896,677 + DDA3937_RS08375 0.40 -0.3 1,896,678 - DDA3937_RS08375 0.40 +0.8 1,896,727 + DDA3937_RS08375 0.44 -2.3 1,896,731 - DDA3937_RS08375 0.44 -1.3 1,896,773 + DDA3937_RS08375 0.47 -0.7 1,896,922 + DDA3937_RS08375 0.57 -0.2 1,897,024 - DDA3937_RS08375 0.65 -0.1 1,897,024 - DDA3937_RS08375 0.65 -2.3 1,897,234 + DDA3937_RS08375 0.79 +0.2 1,897,416 - -1.0 1,897,497 - -0.4 1,897,527 + -0.4 1,897,527 + -1.3 1,897,528 - +0.3 1,897,653 + +0.6 1,897,654 - -1.6 1,897,677 + +0.3 1,897,677 + -0.4 1,897,678 - -0.5 1,897,678 - -1.0 1,897,734 - +0.3 1,897,734 - -0.7 1,897,749 + -0.2 1,897,749 + -0.9 1,897,749 + -0.4 1,897,749 + -0.1 1,897,749 + +1.0 1,897,749 + -0.2 1,897,750 - -0.3 1,897,750 - -0.3 1,897,750 - -1.0 1,897,824 + +0.3 1,897,824 + -1.4 1,897,824 + +0.2 1,897,825 - -1.8 1,897,825 - +0.0 1,897,826 + +0.0 1,897,826 + +0.3 1,897,848 + +0.0 1,897,856 + +0.0 1,897,878 + +0.4 1,897,892 - -0.4 1,897,943 + +0.2 1,897,943 + -1.0 1,897,943 + -0.5 1,897,943 + -0.4 1,897,943 + +0.6 1,897,943 + -1.5 1,897,943 + +0.3 1,897,943 + -0.3 1,897,944 - -1.0 1,897,944 - -0.7 1,897,944 - +0.0 1,897,944 - +0.0 1,897,969 - +1.8 1,897,969 - +0.4 1,897,998 - +0.0 1,898,000 - -0.9 1,898,065 + -0.7 1,898,066 - +1.0 1,898,066 - -0.6 1,898,168 + DDA3937_RS08380 0.16 -0.5 1,898,168 + DDA3937_RS08380 0.16 -0.0 1,898,169 - DDA3937_RS08380 0.16 -0.7 1,898,169 - DDA3937_RS08380 0.16 +0.6 1,898,187 - DDA3937_RS08380 0.19 +0.6 1,898,187 - DDA3937_RS08380 0.19 +0.0 1,898,187 - DDA3937_RS08380 0.19 +1.2 1,898,187 - DDA3937_RS08380 0.19 -0.3 1,898,265 + DDA3937_RS08380 0.30 -1.8 1,898,265 + DDA3937_RS08380 0.30 +0.7 1,898,265 + DDA3937_RS08380 0.30 -0.4 1,898,265 + DDA3937_RS08380 0.30 +0.0 1,898,265 + DDA3937_RS08380 0.30 -1.0 1,898,266 - DDA3937_RS08380 0.30 +0.5 1,898,266 - DDA3937_RS08380 0.30 +0.1 1,898,266 - DDA3937_RS08380 0.30 -0.6 1,898,266 - -2.0 1,898,266 - DDA3937_RS08380 0.30 -1.1 1,898,266 - DDA3937_RS08380 0.30 +0.6 1,898,266 - DDA3937_RS08380 0.30 +0.6 1,898,266 - DDA3937_RS08380 0.30 +0.5 1,898,266 - DDA3937_RS08380 0.30 -1.0 1,898,266 - DDA3937_RS08380 0.30 +0.0 1,898,266 - DDA3937_RS08380 0.30 -2.8 1,898,383 + DDA3937_RS08380 0.47 +0.5 1,898,384 - DDA3937_RS08380 0.47 -1.4 1,898,384 - DDA3937_RS08380 0.47 -2.3 1,898,390 - DDA3937_RS08380 0.48 -0.8 1,898,390 - DDA3937_RS08380 0.48 -0.4 1,898,390 - DDA3937_RS08380 0.48 -1.1 1,898,395 + DDA3937_RS08380 0.49 +0.0 1,898,395 + DDA3937_RS08380 0.49 -1.3 1,898,395 + DDA3937_RS08380 0.49 +0.7 1,898,395 + +0.0 1,898,395 + DDA3937_RS08380 0.49 -0.2 1,898,396 - DDA3937_RS08380 0.49 -0.6 1,898,396 - DDA3937_RS08380 0.49 +0.3 1,898,396 - DDA3937_RS08380 0.49 +1.0 1,898,396 - +0.0 1,898,396 - DDA3937_RS08380 0.49 +0.0 1,898,396 - DDA3937_RS08380 0.49 -0.3 1,898,402 - DDA3937_RS08380 0.50 -0.6 1,898,402 - DDA3937_RS08380 0.50 -0.6 1,898,428 + DDA3937_RS08380 0.54 -1.6 1,898,428 + DDA3937_RS08380 0.54 +0.1 1,898,429 - DDA3937_RS08380 0.54 -0.3 1,898,467 + DDA3937_RS08380 0.59 -0.2 1,898,467 + DDA3937_RS08380 0.59 +0.2 1,898,467 + DDA3937_RS08380 0.59 -1.3 1,898,468 - DDA3937_RS08380 0.60 -0.6 1,898,468 - DDA3937_RS08380 0.60 -0.4 1,898,468 - DDA3937_RS08380 0.60 +0.3 1,898,468 - DDA3937_RS08380 0.60 -0.5 1,898,514 - DDA3937_RS08380 0.66 -0.9
Or see this region's nucleotide sequence