Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08275 and DDA3937_RS08280 overlap by 4 nucleotides DDA3937_RS08280 and DDA3937_RS08285 are separated by 189 nucleotides DDA3937_RS08285 and DDA3937_RS08290 are separated by 313 nucleotides DDA3937_RS08290 and DDA3937_RS08295 are separated by 201 nucleotides
DDA3937_RS08275: DDA3937_RS08275 - DNA/RNA non-specific endonuclease, at 1,872,042 to 1,872,629
_RS08275
DDA3937_RS08280: DDA3937_RS08280 - RhsIA family immunity protein, at 1,872,626 to 1,873,036
_RS08280
DDA3937_RS08285: DDA3937_RS08285 - pyridoxamine 5'-phosphate oxidase family protein, at 1,873,226 to 1,874,470
_RS08285
DDA3937_RS08290: DDA3937_RS08290 - VOC family protein, at 1,874,784 to 1,875,176
_RS08290
DDA3937_RS08295: DDA3937_RS08295 - alpha/beta hydrolase, at 1,875,378 to 1,876,295
_RS08295
Position (kb) 1873
1874
1875 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1872.284 kb on + strand, within DDA3937_RS08275 at 1872.285 kb on - strand, within DDA3937_RS08275 at 1872.285 kb on - strand, within DDA3937_RS08275 at 1872.347 kb on + strand, within DDA3937_RS08275 at 1872.354 kb on - strand, within DDA3937_RS08275 at 1872.355 kb on + strand, within DDA3937_RS08275 at 1872.355 kb on + strand, within DDA3937_RS08275 at 1872.355 kb on + strand, within DDA3937_RS08275 at 1872.356 kb on - strand, within DDA3937_RS08275 at 1872.356 kb on - strand, within DDA3937_RS08275 at 1872.383 kb on + strand, within DDA3937_RS08275 at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.384 kb on - strand at 1872.384 kb on - strand, within DDA3937_RS08275 at 1872.385 kb on + strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.386 kb on - strand, within DDA3937_RS08275 at 1872.393 kb on - strand, within DDA3937_RS08275 at 1872.493 kb on - strand, within DDA3937_RS08275 at 1872.494 kb on + strand, within DDA3937_RS08275 at 1872.495 kb on - strand, within DDA3937_RS08275 at 1872.495 kb on - strand, within DDA3937_RS08275 at 1872.497 kb on + strand, within DDA3937_RS08275 at 1872.597 kb on - strand at 1872.597 kb on - strand at 1872.634 kb on + strand at 1872.635 kb on - strand at 1872.635 kb on - strand at 1872.705 kb on - strand, within DDA3937_RS08280 at 1872.759 kb on + strand, within DDA3937_RS08280 at 1872.759 kb on + strand, within DDA3937_RS08280 at 1872.766 kb on + strand, within DDA3937_RS08280 at 1872.767 kb on - strand, within DDA3937_RS08280 at 1872.822 kb on + strand, within DDA3937_RS08280 at 1872.866 kb on - strand, within DDA3937_RS08280 at 1873.219 kb on + strand at 1873.252 kb on - strand at 1873.328 kb on + strand at 1873.328 kb on + strand at 1873.329 kb on - strand at 1873.329 kb on - strand at 1873.336 kb on - strand at 1873.336 kb on - strand at 1873.336 kb on - strand at 1873.339 kb on + strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.340 kb on - strand at 1873.395 kb on - strand, within DDA3937_RS08285 at 1873.427 kb on + strand, within DDA3937_RS08285 at 1873.434 kb on + strand, within DDA3937_RS08285 at 1873.434 kb on + strand, within DDA3937_RS08285 at 1873.435 kb on - strand, within DDA3937_RS08285 at 1873.435 kb on - strand, within DDA3937_RS08285 at 1873.462 kb on + strand, within DDA3937_RS08285 at 1873.463 kb on - strand, within DDA3937_RS08285 at 1873.463 kb on - strand, within DDA3937_RS08285 at 1873.491 kb on + strand, within DDA3937_RS08285 at 1873.492 kb on - strand, within DDA3937_RS08285 at 1873.658 kb on - strand, within DDA3937_RS08285 at 1873.765 kb on + strand, within DDA3937_RS08285 at 1873.765 kb on + strand, within DDA3937_RS08285 at 1873.766 kb on - strand, within DDA3937_RS08285 at 1873.766 kb on - strand, within DDA3937_RS08285 at 1873.766 kb on - strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.769 kb on + strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.770 kb on - strand, within DDA3937_RS08285 at 1873.775 kb on - strand, within DDA3937_RS08285 at 1873.775 kb on - strand, within DDA3937_RS08285 at 1873.775 kb on - strand, within DDA3937_RS08285 at 1873.967 kb on + strand, within DDA3937_RS08285 at 1873.967 kb on + strand, within DDA3937_RS08285 at 1873.967 kb on + strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1873.968 kb on - strand, within DDA3937_RS08285 at 1874.037 kb on + strand, within DDA3937_RS08285 at 1874.038 kb on - strand, within DDA3937_RS08285 at 1874.038 kb on - strand, within DDA3937_RS08285 at 1874.083 kb on + strand at 1874.083 kb on + strand, within DDA3937_RS08285 at 1874.084 kb on - strand, within DDA3937_RS08285 at 1874.102 kb on + strand at 1874.426 kb on + strand at 1874.426 kb on + strand at 1874.426 kb on + strand at 1874.492 kb on + strand at 1874.492 kb on + strand at 1874.579 kb on + strand at 1874.579 kb on + strand at 1874.625 kb on - strand at 1874.641 kb on + strand at 1874.683 kb on + strand at 1874.683 kb on + strand at 1874.683 kb on + strand at 1874.683 kb on + strand at 1874.684 kb on - strand at 1874.684 kb on - strand at 1874.684 kb on - strand at 1874.684 kb on - strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.685 kb on + strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.686 kb on - strand at 1874.689 kb on + strand at 1874.689 kb on + strand at 1874.689 kb on + strand at 1874.690 kb on - strand at 1874.732 kb on - strand at 1874.732 kb on - strand at 1874.781 kb on + strand at 1874.795 kb on - strand at 1874.797 kb on + strand at 1874.797 kb on + strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.798 kb on - strand at 1874.811 kb on + strand at 1874.811 kb on + strand at 1874.812 kb on - strand at 1874.812 kb on - strand at 1874.812 kb on - strand at 1874.814 kb on - strand at 1874.827 kb on + strand, within DDA3937_RS08290 at 1874.828 kb on - strand, within DDA3937_RS08290 at 1874.828 kb on - strand at 1874.867 kb on + strand, within DDA3937_RS08290 at 1874.867 kb on + strand, within DDA3937_RS08290 at 1874.868 kb on - strand, within DDA3937_RS08290 at 1874.868 kb on - strand, within DDA3937_RS08290 at 1875.149 kb on + strand at 1875.149 kb on + strand at 1875.150 kb on - strand at 1875.150 kb on - strand at 1875.150 kb on - strand at 1875.156 kb on + strand at 1875.156 kb on + strand at 1875.156 kb on + strand at 1875.157 kb on - strand at 1875.157 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.213 kb on - strand at 1875.243 kb on + strand at 1875.260 kb on + strand at 1875.294 kb on + strand at 1875.294 kb on + strand at 1875.294 kb on + strand at 1875.295 kb on - strand at 1875.295 kb on - strand at 1875.295 kb on - strand at 1875.429 kb on + strand at 1875.430 kb on - strand at 1875.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,872,284 + DDA3937_RS08275 0.41 +0.7 1,872,285 - DDA3937_RS08275 0.41 -2.5 1,872,285 - DDA3937_RS08275 0.41 -0.9 1,872,347 + DDA3937_RS08275 0.52 -0.2 1,872,354 - DDA3937_RS08275 0.53 -0.4 1,872,355 + DDA3937_RS08275 0.53 -0.6 1,872,355 + DDA3937_RS08275 0.53 +1.0 1,872,355 + DDA3937_RS08275 0.53 +0.2 1,872,356 - DDA3937_RS08275 0.53 -1.0 1,872,356 - DDA3937_RS08275 0.53 +0.7 1,872,383 + DDA3937_RS08275 0.58 +0.2 1,872,384 - DDA3937_RS08275 0.58 +0.0 1,872,384 - DDA3937_RS08275 0.58 -1.0 1,872,384 - DDA3937_RS08275 0.58 +0.4 1,872,384 - +1.8 1,872,384 - DDA3937_RS08275 0.58 +0.0 1,872,385 + DDA3937_RS08275 0.58 -1.1 1,872,386 - DDA3937_RS08275 0.59 -1.5 1,872,386 - DDA3937_RS08275 0.59 +0.1 1,872,386 - DDA3937_RS08275 0.59 +2.3 1,872,386 - DDA3937_RS08275 0.59 +0.3 1,872,386 - DDA3937_RS08275 0.59 -0.6 1,872,386 - DDA3937_RS08275 0.59 -0.4 1,872,386 - DDA3937_RS08275 0.59 -0.7 1,872,393 - DDA3937_RS08275 0.60 +0.5 1,872,493 - DDA3937_RS08275 0.77 -1.5 1,872,494 + DDA3937_RS08275 0.77 -0.5 1,872,495 - DDA3937_RS08275 0.77 -1.1 1,872,495 - DDA3937_RS08275 0.77 -0.1 1,872,497 + DDA3937_RS08275 0.77 -2.3 1,872,597 - -0.1 1,872,597 - -2.0 1,872,634 + -0.6 1,872,635 - +0.9 1,872,635 - +0.0 1,872,705 - DDA3937_RS08280 0.19 -0.4 1,872,759 + DDA3937_RS08280 0.32 -1.3 1,872,759 + DDA3937_RS08280 0.32 +0.4 1,872,766 + DDA3937_RS08280 0.34 -0.4 1,872,767 - DDA3937_RS08280 0.34 +0.1 1,872,822 + DDA3937_RS08280 0.48 +0.6 1,872,866 - DDA3937_RS08280 0.58 -0.8 1,873,219 + +0.9 1,873,252 - +0.2 1,873,328 + -0.8 1,873,328 + +0.4 1,873,329 - -2.5 1,873,329 - +0.2 1,873,336 - -0.8 1,873,336 - -0.7 1,873,336 - -0.4 1,873,339 + +0.1 1,873,340 - -0.4 1,873,340 - -2.3 1,873,340 - -0.4 1,873,340 - -0.5 1,873,340 - +0.0 1,873,340 - -0.3 1,873,395 - DDA3937_RS08285 0.14 -1.5 1,873,427 + DDA3937_RS08285 0.16 +0.2 1,873,434 + DDA3937_RS08285 0.17 +0.9 1,873,434 + DDA3937_RS08285 0.17 +0.4 1,873,435 - DDA3937_RS08285 0.17 -0.5 1,873,435 - DDA3937_RS08285 0.17 -1.0 1,873,462 + DDA3937_RS08285 0.19 -1.7 1,873,463 - DDA3937_RS08285 0.19 -0.1 1,873,463 - DDA3937_RS08285 0.19 +0.4 1,873,491 + DDA3937_RS08285 0.21 -2.5 1,873,492 - DDA3937_RS08285 0.21 -1.0 1,873,658 - DDA3937_RS08285 0.35 +0.5 1,873,765 + DDA3937_RS08285 0.43 -0.3 1,873,765 + DDA3937_RS08285 0.43 +1.0 1,873,766 - DDA3937_RS08285 0.43 +0.3 1,873,766 - DDA3937_RS08285 0.43 +0.4 1,873,766 - DDA3937_RS08285 0.43 -0.8 1,873,769 + DDA3937_RS08285 0.44 +0.4 1,873,769 + DDA3937_RS08285 0.44 -0.3 1,873,769 + DDA3937_RS08285 0.44 +0.5 1,873,769 + DDA3937_RS08285 0.44 -0.6 1,873,769 + DDA3937_RS08285 0.44 +0.6 1,873,769 + DDA3937_RS08285 0.44 -0.5 1,873,770 - DDA3937_RS08285 0.44 +0.7 1,873,770 - DDA3937_RS08285 0.44 -2.0 1,873,770 - DDA3937_RS08285 0.44 -0.5 1,873,770 - DDA3937_RS08285 0.44 -0.3 1,873,770 - DDA3937_RS08285 0.44 +0.7 1,873,770 - DDA3937_RS08285 0.44 +0.2 1,873,775 - DDA3937_RS08285 0.44 +1.0 1,873,775 - DDA3937_RS08285 0.44 -0.4 1,873,775 - DDA3937_RS08285 0.44 +0.8 1,873,967 + DDA3937_RS08285 0.60 -0.4 1,873,967 + DDA3937_RS08285 0.60 -0.5 1,873,967 + DDA3937_RS08285 0.60 -0.7 1,873,968 - DDA3937_RS08285 0.60 +0.8 1,873,968 - DDA3937_RS08285 0.60 +0.2 1,873,968 - DDA3937_RS08285 0.60 -0.2 1,873,968 - DDA3937_RS08285 0.60 -0.4 1,873,968 - DDA3937_RS08285 0.60 +0.6 1,873,968 - DDA3937_RS08285 0.60 +0.2 1,874,037 + DDA3937_RS08285 0.65 +0.4 1,874,038 - DDA3937_RS08285 0.65 +0.1 1,874,038 - DDA3937_RS08285 0.65 +0.5 1,874,083 + +1.4 1,874,083 + DDA3937_RS08285 0.69 +0.2 1,874,084 - DDA3937_RS08285 0.69 -0.5 1,874,102 + +1.6 1,874,426 + -0.2 1,874,426 + +0.2 1,874,426 + -1.0 1,874,492 + -0.4 1,874,492 + -0.4 1,874,579 + -0.1 1,874,579 + -0.2 1,874,625 - +0.6 1,874,641 + -0.3 1,874,683 + +0.8 1,874,683 + +0.6 1,874,683 + +0.6 1,874,683 + +1.3 1,874,684 - +0.2 1,874,684 - -0.8 1,874,684 - -0.5 1,874,684 - +0.7 1,874,685 + -0.3 1,874,685 + -1.1 1,874,685 + +0.0 1,874,685 + -0.5 1,874,685 + -1.0 1,874,685 + -0.5 1,874,686 - -0.0 1,874,686 - -1.0 1,874,686 - +0.5 1,874,686 - -0.5 1,874,686 - +0.4 1,874,686 - -0.1 1,874,686 - -1.2 1,874,686 - +0.3 1,874,686 - -0.9 1,874,686 - +1.3 1,874,689 + -0.5 1,874,689 + -0.2 1,874,689 + +0.5 1,874,690 - -0.3 1,874,732 - +0.5 1,874,732 - -0.5 1,874,781 + -0.5 1,874,795 - -0.6 1,874,797 + +0.0 1,874,797 + +0.9 1,874,798 - -0.2 1,874,798 - +0.5 1,874,798 - +3.4 1,874,798 - +0.9 1,874,798 - +0.4 1,874,798 - +0.0 1,874,798 - -0.2 1,874,798 - +0.6 1,874,811 + +1.3 1,874,811 + +0.1 1,874,812 - +0.5 1,874,812 - -1.3 1,874,812 - -1.9 1,874,814 - +0.0 1,874,827 + DDA3937_RS08290 0.11 -0.4 1,874,828 - DDA3937_RS08290 0.11 +0.0 1,874,828 - -0.3 1,874,867 + DDA3937_RS08290 0.21 +2.5 1,874,867 + DDA3937_RS08290 0.21 +0.3 1,874,868 - DDA3937_RS08290 0.21 -0.8 1,874,868 - DDA3937_RS08290 0.21 -0.1 1,875,149 + +0.3 1,875,149 + +0.3 1,875,150 - +1.0 1,875,150 - +0.7 1,875,150 - -1.8 1,875,156 + -0.1 1,875,156 + -0.3 1,875,156 + -1.5 1,875,157 - -0.2 1,875,157 - +0.6 1,875,213 - +1.4 1,875,213 - +0.6 1,875,213 - -0.4 1,875,213 - +0.3 1,875,213 - +0.1 1,875,243 + +0.0 1,875,260 + -0.2 1,875,294 + +0.5 1,875,294 + +0.0 1,875,294 + +0.2 1,875,295 - +0.2 1,875,295 - -0.4 1,875,295 - +0.0 1,875,429 + +0.0 1,875,430 - -0.1 1,875,430 - +1.3
Or see this region's nucleotide sequence