Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07620

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07610 and DDA3937_RS07615 overlap by 23 nucleotidesDDA3937_RS07615 and DDA3937_RS07620 overlap by 14 nucleotidesDDA3937_RS07620 and DDA3937_RS07625 are separated by 24 nucleotidesDDA3937_RS07625 and DDA3937_RS07630 overlap by 4 nucleotides DDA3937_RS07610: DDA3937_RS07610 - carbon-phosphorus lyase complex subunit PhnI, at 1,716,588 to 1,717,679 _RS07610 DDA3937_RS07615: DDA3937_RS07615 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 1,717,657 to 1,718,511 _RS07615 DDA3937_RS07620: DDA3937_RS07620 - phosphonate C-P lyase system protein PhnK, at 1,718,498 to 1,719,310 _RS07620 DDA3937_RS07625: DDA3937_RS07625 - phosphonate C-P lyase system protein PhnL, at 1,719,335 to 1,720,057 _RS07625 DDA3937_RS07630: DDA3937_RS07630 - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 1,720,054 to 1,721,223 _RS07630 Position (kb) 1718 1719 1720Strain fitness (log2 ratio) -2 -1 0 1 2at 1717.590 kb on + strandat 1717.590 kb on + strandat 1717.591 kb on - strandat 1717.591 kb on - strandat 1717.591 kb on - strandat 1717.591 kb on - strandat 1717.675 kb on + strandat 1717.676 kb on - strandat 1717.677 kb on + strandat 1717.678 kb on - strandat 1717.687 kb on + strandat 1717.710 kb on + strandat 1717.710 kb on + strandat 1717.792 kb on + strand, within DDA3937_RS07615at 1718.023 kb on + strand, within DDA3937_RS07615at 1718.023 kb on + strand, within DDA3937_RS07615at 1718.056 kb on - strand, within DDA3937_RS07615at 1718.104 kb on + strand, within DDA3937_RS07615at 1718.128 kb on + strand, within DDA3937_RS07615at 1718.128 kb on + strand, within DDA3937_RS07615at 1718.129 kb on - strand, within DDA3937_RS07615at 1718.167 kb on + strand, within DDA3937_RS07615at 1718.167 kb on + strand, within DDA3937_RS07615at 1718.167 kb on + strand, within DDA3937_RS07615at 1718.167 kb on + strand, within DDA3937_RS07615at 1718.168 kb on - strand, within DDA3937_RS07615at 1718.168 kb on - strand, within DDA3937_RS07615at 1718.168 kb on - strand, within DDA3937_RS07615at 1718.197 kb on + strand, within DDA3937_RS07615at 1718.197 kb on + strand, within DDA3937_RS07615at 1718.198 kb on - strand, within DDA3937_RS07615at 1718.198 kb on - strand, within DDA3937_RS07615at 1718.198 kb on - strand, within DDA3937_RS07615at 1718.198 kb on - strand, within DDA3937_RS07615at 1718.198 kb on - strand, within DDA3937_RS07615at 1718.203 kb on - strand, within DDA3937_RS07615at 1718.311 kb on + strand, within DDA3937_RS07615at 1718.312 kb on - strand, within DDA3937_RS07615at 1718.313 kb on + strand, within DDA3937_RS07615at 1718.313 kb on + strand, within DDA3937_RS07615at 1718.314 kb on - strand, within DDA3937_RS07615at 1718.404 kb on + strand, within DDA3937_RS07615at 1718.404 kb on + strand, within DDA3937_RS07615at 1718.404 kb on + strand, within DDA3937_RS07615at 1718.405 kb on - strand, within DDA3937_RS07615at 1718.417 kb on + strand, within DDA3937_RS07615at 1718.418 kb on - strand, within DDA3937_RS07615at 1718.418 kb on - strand, within DDA3937_RS07615at 1718.418 kb on - strand, within DDA3937_RS07615at 1718.446 kb on + strandat 1718.446 kb on + strandat 1718.447 kb on - strandat 1718.447 kb on - strandat 1718.447 kb on - strandat 1718.597 kb on + strand, within DDA3937_RS07620at 1718.763 kb on - strandat 1718.763 kb on - strand, within DDA3937_RS07620at 1718.817 kb on + strand, within DDA3937_RS07620at 1718.818 kb on - strand, within DDA3937_RS07620at 1718.907 kb on - strand, within DDA3937_RS07620at 1719.042 kb on - strand, within DDA3937_RS07620at 1719.042 kb on - strand, within DDA3937_RS07620at 1719.042 kb on - strand, within DDA3937_RS07620at 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.276 kb on - strandat 1719.276 kb on - strandat 1719.276 kb on - strandat 1719.276 kb on - strandat 1719.324 kb on + strandat 1719.325 kb on - strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.335 kb on - strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.397 kb on - strandat 1719.500 kb on - strand, within DDA3937_RS07625at 1719.500 kb on - strand, within DDA3937_RS07625at 1719.524 kb on + strand, within DDA3937_RS07625at 1719.533 kb on + strand, within DDA3937_RS07625at 1719.534 kb on - strand, within DDA3937_RS07625at 1719.534 kb on - strandat 1719.534 kb on - strand, within DDA3937_RS07625at 1719.534 kb on - strand, within DDA3937_RS07625at 1719.571 kb on + strand, within DDA3937_RS07625at 1719.571 kb on + strand, within DDA3937_RS07625at 1719.571 kb on + strand, within DDA3937_RS07625at 1719.572 kb on - strand, within DDA3937_RS07625at 1719.572 kb on - strand, within DDA3937_RS07625at 1719.574 kb on + strand, within DDA3937_RS07625at 1719.575 kb on - strand, within DDA3937_RS07625at 1719.575 kb on - strand, within DDA3937_RS07625at 1719.635 kb on - strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.974 kb on - strand, within DDA3937_RS07625at 1720.035 kb on + strandat 1720.065 kb on + strandat 1720.081 kb on - strandat 1720.081 kb on - strandat 1720.098 kb on + strandat 1720.128 kb on - strandat 1720.128 kb on - strandat 1720.128 kb on - strandat 1720.128 kb on - strandat 1720.252 kb on - strand, within DDA3937_RS07630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,717,590 + +0.1
1,717,590 + -1.3
1,717,591 - +0.2
1,717,591 - -1.1
1,717,591 - -2.4
1,717,591 - -0.1
1,717,675 + +0.5
1,717,676 - -0.4
1,717,677 + -0.9
1,717,678 - +1.1
1,717,687 + -0.6
1,717,710 + +0.1
1,717,710 + +0.4
1,717,792 + DDA3937_RS07615 0.16 +0.1
1,718,023 + DDA3937_RS07615 0.43 -0.5
1,718,023 + DDA3937_RS07615 0.43 +1.8
1,718,056 - DDA3937_RS07615 0.47 +0.5
1,718,104 + DDA3937_RS07615 0.52 -0.2
1,718,128 + DDA3937_RS07615 0.55 -0.9
1,718,128 + DDA3937_RS07615 0.55 -2.1
1,718,129 - DDA3937_RS07615 0.55 +1.1
1,718,167 + DDA3937_RS07615 0.60 -0.2
1,718,167 + DDA3937_RS07615 0.60 -0.5
1,718,167 + DDA3937_RS07615 0.60 +0.2
1,718,167 + DDA3937_RS07615 0.60 -2.3
1,718,168 - DDA3937_RS07615 0.60 -0.2
1,718,168 - DDA3937_RS07615 0.60 +0.7
1,718,168 - DDA3937_RS07615 0.60 -0.0
1,718,197 + DDA3937_RS07615 0.63 -0.2
1,718,197 + DDA3937_RS07615 0.63 -1.9
1,718,198 - DDA3937_RS07615 0.63 -0.3
1,718,198 - DDA3937_RS07615 0.63 +0.2
1,718,198 - DDA3937_RS07615 0.63 +0.4
1,718,198 - DDA3937_RS07615 0.63 -1.1
1,718,198 - DDA3937_RS07615 0.63 +0.2
1,718,203 - DDA3937_RS07615 0.64 +0.3
1,718,311 + DDA3937_RS07615 0.76 -0.1
1,718,312 - DDA3937_RS07615 0.77 -0.8
1,718,313 + DDA3937_RS07615 0.77 -2.5
1,718,313 + DDA3937_RS07615 0.77 +0.3
1,718,314 - DDA3937_RS07615 0.77 +0.1
1,718,404 + DDA3937_RS07615 0.87 +1.0
1,718,404 + DDA3937_RS07615 0.87 +0.5
1,718,404 + DDA3937_RS07615 0.87 +0.3
1,718,405 - DDA3937_RS07615 0.87 -0.3
1,718,417 + DDA3937_RS07615 0.89 +0.0
1,718,418 - DDA3937_RS07615 0.89 +0.5
1,718,418 - DDA3937_RS07615 0.89 -0.3
1,718,418 - DDA3937_RS07615 0.89 +0.1
1,718,446 + +0.4
1,718,446 + +0.4
1,718,447 - +0.3
1,718,447 - -0.9
1,718,447 - -0.0
1,718,597 + DDA3937_RS07620 0.12 +0.2
1,718,763 - +0.1
1,718,763 - DDA3937_RS07620 0.33 +1.5
1,718,817 + DDA3937_RS07620 0.39 +1.6
1,718,818 - DDA3937_RS07620 0.39 -0.1
1,718,907 - DDA3937_RS07620 0.50 +0.3
1,719,042 - DDA3937_RS07620 0.67 +0.1
1,719,042 - DDA3937_RS07620 0.67 +0.3
1,719,042 - DDA3937_RS07620 0.67 -0.3
1,719,275 + -0.8
1,719,275 + +0.1
1,719,275 + -0.4
1,719,275 + +0.9
1,719,275 + -0.4
1,719,276 - -0.3
1,719,276 - -0.3
1,719,276 - +1.1
1,719,276 - -0.8
1,719,324 + +0.4
1,719,325 - -1.1
1,719,334 + -0.1
1,719,334 + -0.7
1,719,334 + -0.4
1,719,334 + +0.1
1,719,334 + -0.5
1,719,335 - +0.2
1,719,396 + -2.3
1,719,396 + +0.7
1,719,396 + -0.3
1,719,396 + -0.1
1,719,396 + -0.2
1,719,397 - -0.5
1,719,500 - DDA3937_RS07625 0.23 +0.1
1,719,500 - DDA3937_RS07625 0.23 -0.6
1,719,524 + DDA3937_RS07625 0.26 -2.2
1,719,533 + DDA3937_RS07625 0.27 +1.5
1,719,534 - DDA3937_RS07625 0.28 -0.7
1,719,534 - -2.3
1,719,534 - DDA3937_RS07625 0.28 -0.6
1,719,534 - DDA3937_RS07625 0.28 -1.0
1,719,571 + DDA3937_RS07625 0.33 -0.9
1,719,571 + DDA3937_RS07625 0.33 -0.2
1,719,571 + DDA3937_RS07625 0.33 -0.6
1,719,572 - DDA3937_RS07625 0.33 -1.3
1,719,572 - DDA3937_RS07625 0.33 -0.2
1,719,574 + DDA3937_RS07625 0.33 +0.6
1,719,575 - DDA3937_RS07625 0.33 -0.0
1,719,575 - DDA3937_RS07625 0.33 +0.1
1,719,635 - DDA3937_RS07625 0.41 -1.9
1,719,690 + DDA3937_RS07625 0.49 -0.1
1,719,690 + DDA3937_RS07625 0.49 -0.6
1,719,690 + DDA3937_RS07625 0.49 -0.2
1,719,690 + DDA3937_RS07625 0.49 -0.7
1,719,974 - DDA3937_RS07625 0.88 -0.5
1,720,035 + -0.5
1,720,065 + -0.5
1,720,081 - +0.8
1,720,081 - -0.4
1,720,098 + +1.5
1,720,128 - -0.9
1,720,128 - -0.9
1,720,128 - +1.4
1,720,128 - -0.7
1,720,252 - DDA3937_RS07630 0.17 +0.2

Or see this region's nucleotide sequence