Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07465

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS07460 and DDA3937_RS07465 are separated by 16 nucleotidesDDA3937_RS07465 and DDA3937_RS07470 are separated by 12 nucleotides DDA3937_RS07460: DDA3937_RS07460 - hydrogenase 4 subunit D, at 1,683,410 to 1,684,849 _RS07460 DDA3937_RS07465: DDA3937_RS07465 - respiratory chain complex I subunit 1 family protein, at 1,684,866 to 1,685,813 _RS07465 DDA3937_RS07470: DDA3937_RS07470 - hydrogenase 4 subunit B, at 1,685,826 to 1,687,865 _RS07470 Position (kb) 1684 1685 1686Strain fitness (log2 ratio) -3 -2 -1 0 1at 1683.921 kb on + strand, within DDA3937_RS07460at 1683.921 kb on + strand, within DDA3937_RS07460at 1683.921 kb on + strand, within DDA3937_RS07460at 1683.945 kb on + strand, within DDA3937_RS07460at 1683.945 kb on + strand, within DDA3937_RS07460at 1683.981 kb on + strand, within DDA3937_RS07460at 1683.981 kb on + strandat 1683.981 kb on + strand, within DDA3937_RS07460at 1683.981 kb on + strand, within DDA3937_RS07460at 1683.981 kb on + strand, within DDA3937_RS07460at 1683.982 kb on - strand, within DDA3937_RS07460at 1683.996 kb on + strand, within DDA3937_RS07460at 1683.997 kb on - strand, within DDA3937_RS07460at 1683.997 kb on - strand, within DDA3937_RS07460at 1683.997 kb on - strand, within DDA3937_RS07460at 1684.006 kb on + strand, within DDA3937_RS07460at 1684.084 kb on + strand, within DDA3937_RS07460at 1684.085 kb on - strand, within DDA3937_RS07460at 1684.085 kb on - strand, within DDA3937_RS07460at 1684.086 kb on + strand, within DDA3937_RS07460at 1684.087 kb on - strand, within DDA3937_RS07460at 1684.087 kb on - strand, within DDA3937_RS07460at 1684.240 kb on + strand, within DDA3937_RS07460at 1684.241 kb on - strand, within DDA3937_RS07460at 1684.311 kb on + strand, within DDA3937_RS07460at 1684.312 kb on - strand, within DDA3937_RS07460at 1684.312 kb on - strand, within DDA3937_RS07460at 1684.312 kb on - strand, within DDA3937_RS07460at 1684.387 kb on - strand, within DDA3937_RS07460at 1684.487 kb on + strand, within DDA3937_RS07460at 1684.487 kb on + strand, within DDA3937_RS07460at 1684.488 kb on - strand, within DDA3937_RS07460at 1684.488 kb on - strand, within DDA3937_RS07460at 1684.488 kb on - strand, within DDA3937_RS07460at 1684.503 kb on + strand, within DDA3937_RS07460at 1684.503 kb on + strand, within DDA3937_RS07460at 1684.504 kb on - strand, within DDA3937_RS07460at 1684.504 kb on - strand, within DDA3937_RS07460at 1684.504 kb on - strand, within DDA3937_RS07460at 1684.504 kb on - strand, within DDA3937_RS07460at 1684.504 kb on - strand, within DDA3937_RS07460at 1684.506 kb on + strand, within DDA3937_RS07460at 1684.555 kb on - strand, within DDA3937_RS07460at 1684.567 kb on - strand, within DDA3937_RS07460at 1684.567 kb on - strand, within DDA3937_RS07460at 1684.567 kb on - strand, within DDA3937_RS07460at 1684.622 kb on - strand, within DDA3937_RS07460at 1684.666 kb on - strand, within DDA3937_RS07460at 1684.794 kb on - strandat 1684.840 kb on + strandat 1684.840 kb on + strandat 1684.840 kb on + strandat 1684.841 kb on - strandat 1684.841 kb on - strandat 1684.841 kb on - strandat 1684.867 kb on + strandat 1684.867 kb on + strandat 1684.868 kb on - strandat 1684.869 kb on + strandat 1684.870 kb on - strandat 1684.870 kb on - strandat 1684.870 kb on - strandat 1684.870 kb on - strandat 1684.883 kb on - strandat 1685.158 kb on + strand, within DDA3937_RS07465at 1685.488 kb on + strand, within DDA3937_RS07465at 1685.488 kb on + strand, within DDA3937_RS07465at 1685.489 kb on - strandat 1685.489 kb on - strand, within DDA3937_RS07465at 1685.489 kb on - strand, within DDA3937_RS07465at 1685.489 kb on - strand, within DDA3937_RS07465at 1685.489 kb on - strand, within DDA3937_RS07465at 1685.665 kb on + strand, within DDA3937_RS07465at 1685.666 kb on - strandat 1685.806 kb on + strandat 1685.806 kb on + strandat 1685.806 kb on + strandat 1685.807 kb on - strandat 1685.828 kb on - strandat 1685.872 kb on + strandat 1685.872 kb on + strandat 1685.872 kb on + strandat 1685.873 kb on - strandat 1685.873 kb on - strandat 1685.873 kb on - strandat 1685.873 kb on - strandat 1685.882 kb on - strandat 1686.062 kb on - strand, within DDA3937_RS07470at 1686.199 kb on + strand, within DDA3937_RS07470at 1686.254 kb on + strand, within DDA3937_RS07470at 1686.254 kb on + strand, within DDA3937_RS07470at 1686.411 kb on + strand, within DDA3937_RS07470at 1686.496 kb on + strand, within DDA3937_RS07470at 1686.497 kb on - strand, within DDA3937_RS07470at 1686.616 kb on + strand, within DDA3937_RS07470at 1686.616 kb on + strand, within DDA3937_RS07470at 1686.616 kb on + strand, within DDA3937_RS07470at 1686.616 kb on + strand, within DDA3937_RS07470at 1686.617 kb on - strand, within DDA3937_RS07470at 1686.617 kb on - strand, within DDA3937_RS07470at 1686.621 kb on - strand, within DDA3937_RS07470at 1686.621 kb on - strand, within DDA3937_RS07470at 1686.671 kb on + strand, within DDA3937_RS07470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,683,921 + DDA3937_RS07460 0.35 +1.0
1,683,921 + DDA3937_RS07460 0.35 -1.2
1,683,921 + DDA3937_RS07460 0.35 -1.0
1,683,945 + DDA3937_RS07460 0.37 +0.1
1,683,945 + DDA3937_RS07460 0.37 -0.1
1,683,981 + DDA3937_RS07460 0.40 -2.2
1,683,981 + -0.9
1,683,981 + DDA3937_RS07460 0.40 -1.1
1,683,981 + DDA3937_RS07460 0.40 +0.2
1,683,981 + DDA3937_RS07460 0.40 +0.3
1,683,982 - DDA3937_RS07460 0.40 +0.3
1,683,996 + DDA3937_RS07460 0.41 -0.3
1,683,997 - DDA3937_RS07460 0.41 -1.0
1,683,997 - DDA3937_RS07460 0.41 -0.9
1,683,997 - DDA3937_RS07460 0.41 -1.1
1,684,006 + DDA3937_RS07460 0.41 -0.1
1,684,084 + DDA3937_RS07460 0.47 +0.1
1,684,085 - DDA3937_RS07460 0.47 +0.6
1,684,085 - DDA3937_RS07460 0.47 -0.6
1,684,086 + DDA3937_RS07460 0.47 +1.5
1,684,087 - DDA3937_RS07460 0.47 -0.1
1,684,087 - DDA3937_RS07460 0.47 -0.2
1,684,240 + DDA3937_RS07460 0.58 +0.6
1,684,241 - DDA3937_RS07460 0.58 -0.9
1,684,311 + DDA3937_RS07460 0.63 -0.0
1,684,312 - DDA3937_RS07460 0.63 -0.8
1,684,312 - DDA3937_RS07460 0.63 +0.1
1,684,312 - DDA3937_RS07460 0.63 +1.0
1,684,387 - DDA3937_RS07460 0.68 -1.7
1,684,487 + DDA3937_RS07460 0.75 -0.3
1,684,487 + DDA3937_RS07460 0.75 +0.1
1,684,488 - DDA3937_RS07460 0.75 -0.2
1,684,488 - DDA3937_RS07460 0.75 +0.8
1,684,488 - DDA3937_RS07460 0.75 +0.2
1,684,503 + DDA3937_RS07460 0.76 -0.5
1,684,503 + DDA3937_RS07460 0.76 +0.1
1,684,504 - DDA3937_RS07460 0.76 -0.1
1,684,504 - DDA3937_RS07460 0.76 -0.4
1,684,504 - DDA3937_RS07460 0.76 +0.3
1,684,504 - DDA3937_RS07460 0.76 -0.0
1,684,504 - DDA3937_RS07460 0.76 -0.6
1,684,506 + DDA3937_RS07460 0.76 +0.5
1,684,555 - DDA3937_RS07460 0.80 +0.3
1,684,567 - DDA3937_RS07460 0.80 +0.2
1,684,567 - DDA3937_RS07460 0.80 -0.9
1,684,567 - DDA3937_RS07460 0.80 -0.2
1,684,622 - DDA3937_RS07460 0.84 -0.3
1,684,666 - DDA3937_RS07460 0.87 -0.4
1,684,794 - +0.1
1,684,840 + +0.3
1,684,840 + -0.6
1,684,840 + -0.7
1,684,841 - +1.1
1,684,841 - +0.4
1,684,841 - -0.1
1,684,867 + -0.2
1,684,867 + -0.7
1,684,868 - -0.2
1,684,869 + +0.3
1,684,870 - -0.3
1,684,870 - +0.5
1,684,870 - +0.3
1,684,870 - -0.5
1,684,883 - +0.1
1,685,158 + DDA3937_RS07465 0.31 -0.7
1,685,488 + DDA3937_RS07465 0.66 -1.8
1,685,488 + DDA3937_RS07465 0.66 -0.1
1,685,489 - +1.1
1,685,489 - DDA3937_RS07465 0.66 -0.1
1,685,489 - DDA3937_RS07465 0.66 -0.9
1,685,489 - DDA3937_RS07465 0.66 +0.1
1,685,489 - DDA3937_RS07465 0.66 -1.9
1,685,665 + DDA3937_RS07465 0.84 -3.6
1,685,666 - +1.7
1,685,806 + -0.4
1,685,806 + -0.0
1,685,806 + +1.5
1,685,807 - +0.4
1,685,828 - -0.4
1,685,872 + -0.1
1,685,872 + +0.9
1,685,872 + +0.0
1,685,873 - -0.6
1,685,873 - -0.4
1,685,873 - +0.1
1,685,873 - -1.1
1,685,882 - -0.5
1,686,062 - DDA3937_RS07470 0.12 +0.2
1,686,199 + DDA3937_RS07470 0.18 -0.2
1,686,254 + DDA3937_RS07470 0.21 +0.3
1,686,254 + DDA3937_RS07470 0.21 +0.3
1,686,411 + DDA3937_RS07470 0.29 -1.3
1,686,496 + DDA3937_RS07470 0.33 -0.5
1,686,497 - DDA3937_RS07470 0.33 -0.8
1,686,616 + DDA3937_RS07470 0.39 -0.1
1,686,616 + DDA3937_RS07470 0.39 -1.1
1,686,616 + DDA3937_RS07470 0.39 -2.2
1,686,616 + DDA3937_RS07470 0.39 +0.1
1,686,617 - DDA3937_RS07470 0.39 +0.1
1,686,617 - DDA3937_RS07470 0.39 -1.2
1,686,621 - DDA3937_RS07470 0.39 -1.7
1,686,621 - DDA3937_RS07470 0.39 -0.9
1,686,671 + DDA3937_RS07470 0.41 -0.4

Or see this region's nucleotide sequence