Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05695

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,272,836	+		DDA3937_RS05690	0.63	-0.6
1,272,848	+		DDA3937_RS05690	0.63	-0.9
1,272,855	-		DDA3937_RS05690	0.64	-0.4
1,272,880	-		DDA3937_RS05690	0.65	-0.9
1,272,882	+		DDA3937_RS05690	0.65	-1.3
1,272,882	+		DDA3937_RS05690	0.65	-1.1
1,272,882	+		DDA3937_RS05690	0.65	-1.7
1,272,882	+		DDA3937_RS05690	0.65	-0.4
1,272,882	+		DDA3937_RS05690	0.65	-1.3
1,272,882	+				-1.0
1,272,882	+		DDA3937_RS05690	0.65	-1.4
1,272,882	+		DDA3937_RS05690	0.65	-1.5
1,272,883	-		DDA3937_RS05690	0.65	-0.3
1,272,883	-		DDA3937_RS05690	0.65	-0.1
1,272,883	-		DDA3937_RS05690	0.65	+0.3
1,273,005	+		DDA3937_RS05690	0.72	-0.9
1,273,006	-		DDA3937_RS05690	0.72	-0.1
1,273,112	+		DDA3937_RS05690	0.78	-0.2
1,273,112	+		DDA3937_RS05690	0.78	-0.3
1,273,276	+		DDA3937_RS05690	0.87	+0.7
1,273,276	+		DDA3937_RS05690	0.87	-0.8
1,273,277	-		DDA3937_RS05690	0.87	+0.7
1,273,277	-		DDA3937_RS05690	0.87	-0.9
1,273,362	-				+0.3
1,273,413	+				-0.7
1,273,416	+				-1.0
1,273,425	+				-0.3
1,273,425	+				+1.6
1,273,425	+				-0.7
1,273,425	+				-0.6
1,273,426	-				-0.9
1,273,426	-				-0.9
1,273,426	-				-2.3
1,273,426	-				+0.3
1,273,426	-				-0.7
1,273,426	-				-0.7
1,273,426	-				-0.3
1,273,489	+				-0.3
1,273,556	-				-1.7
1,273,595	+				+0.3
1,273,640	+				+0.7
1,273,640	+				-1.8
1,273,640	+				-0.1
1,273,640	+				-0.0
1,273,640	+				+0.2
1,273,641	-				+1.0
1,273,641	-				+0.3
1,273,641	-				-0.3
1,273,641	-				+1.3
1,273,641	-				+0.2
1,273,647	+				+0.1
1,273,647	+				+0.3
1,273,647	+				-1.6
1,273,647	+				+0.3
1,273,647	+				+0.9
1,273,648	-				-0.7
1,273,648	-				+0.4
1,273,648	-				+1.5
1,273,648	-				-0.1
1,273,648	-				-0.0
1,273,686	+				-0.1
1,273,713	-				+0.8
1,273,748	+				+0.2
1,273,749	-				+0.9
1,273,749	-				-0.5
1,273,749	-				+1.3
1,273,749	-				+0.7
1,273,749	-				-0.1
1,273,780	-				+1.3
1,273,780	-				-0.3
1,273,812	-				+0.8
1,273,819	+				+0.6
1,273,820	-				+0.1
1,273,820	-				+0.3
1,273,820	-				+0.5
1,273,823	+				+0.1
1,273,824	-				-0.2
1,273,846	+		DDA3937_RS05695	0.14	-1.0
1,273,847	-		DDA3937_RS05695	0.14	-0.9
1,273,847	-		DDA3937_RS05695	0.14	-1.0
1,273,847	-		DDA3937_RS05695	0.14	-0.7
1,273,847	-		DDA3937_RS05695	0.14	-0.2
1,273,936	-		DDA3937_RS05695	0.40	-0.8
1,273,936	-		DDA3937_RS05695	0.40	-0.8
1,273,959	-		DDA3937_RS05695	0.47	-0.5
1,274,135	-				-0.1
1,274,135	-				-1.8
1,274,136	+				-0.3
1,274,136	+				-2.0
1,274,137	-				-1.1
1,274,137	-				-0.7
1,274,159	-				-1.0
1,274,161	+				-0.7
1,274,161	+				-0.2
1,274,161	+				-0.0
1,274,162	-				-0.1
1,274,162	-				+0.5
1,274,162	-				+0.9
1,274,162	-				+0.6
1,274,300	+				-1.0
1,274,314	+		DDA3937_RS05700	0.10	+0.1
1,274,314	+		DDA3937_RS05700	0.10	-0.5
1,274,315	-		DDA3937_RS05700	0.10	-0.6
1,274,396	+		DDA3937_RS05700	0.17	-0.6
1,274,397	-		DDA3937_RS05700	0.17	-0.5
1,274,437	-		DDA3937_RS05700	0.20	-0.3
1,274,437	-		DDA3937_RS05700	0.20	+0.1
1,274,513	+		DDA3937_RS05700	0.26	+0.1
1,274,514	-		DDA3937_RS05700	0.26	-1.2
1,274,618	+		DDA3937_RS05700	0.34	+0.6
1,274,619	-		DDA3937_RS05700	0.34	-2.5
1,274,619	-		DDA3937_RS05700	0.34	-0.3
1,274,670	+		DDA3937_RS05700	0.38	+0.5
1,274,670	+		DDA3937_RS05700	0.38	-0.7
1,274,670	+		DDA3937_RS05700	0.38	-0.3
1,274,671	-		DDA3937_RS05700	0.38	-0.1
1,274,671	-		DDA3937_RS05700	0.38	-0.4
1,274,692	+		DDA3937_RS05700	0.40	-1.0
1,274,749	+		DDA3937_RS05700	0.44	-2.0
1,274,749	+		DDA3937_RS05700	0.44	-0.3
1,274,750	-		DDA3937_RS05700	0.44	+0.3
1,274,750	-		DDA3937_RS05700	0.44	-0.4
1,274,752	+		DDA3937_RS05700	0.44	+0.4
1,274,752	+		DDA3937_RS05700	0.44	+0.6
1,274,752	+		DDA3937_RS05700	0.44	-1.2
1,274,752	+		DDA3937_RS05700	0.44	-0.6
1,274,752	+		DDA3937_RS05700	0.44	-0.3
1,274,753	-		DDA3937_RS05700	0.44	-0.1
1,274,753	-		DDA3937_RS05700	0.44	+0.1
1,274,753	-		DDA3937_RS05700	0.44	-1.0
1,274,753	-		DDA3937_RS05700	0.44	+0.3
1,274,855	-		DDA3937_RS05700	0.52	+0.4
1,274,877	+		DDA3937_RS05700	0.54	+0.0
1,274,877	+		DDA3937_RS05700	0.54	+0.6
1,274,877	+		DDA3937_RS05700	0.54	-0.7
1,274,878	-		DDA3937_RS05700	0.54	+0.4
1,275,005	+		DDA3937_RS05700	0.64	+0.3
1,275,005	+		DDA3937_RS05700	0.64	-1.9
1,275,047	+		DDA3937_RS05700	0.67	-1.1
1,275,048	-		DDA3937_RS05700	0.67	-1.9