Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05650 and DDA3937_RS05655 are separated by 194 nucleotides DDA3937_RS05655 and DDA3937_RS05660 are separated by 256 nucleotides
DDA3937_RS05650: DDA3937_RS05650 - endopeptidase La, at 1,261,816 to 1,264,179
_RS05650
DDA3937_RS05655: DDA3937_RS05655 - DNA-binding protein HU-beta, at 1,264,374 to 1,264,646
_RS05655
DDA3937_RS05660: DDA3937_RS05660 - peptidylprolyl isomerase, at 1,264,903 to 1,266,783
_RS05660
Position (kb)
1264
1265 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1263.418 kb on + strand, within DDA3937_RS05650 at 1263.747 kb on - strand, within DDA3937_RS05650 at 1264.142 kb on - strand at 1264.142 kb on - strand at 1264.185 kb on + strand at 1264.219 kb on - strand at 1264.223 kb on - strand at 1264.312 kb on + strand at 1264.312 kb on + strand at 1264.318 kb on + strand at 1264.318 kb on + strand at 1264.318 kb on + strand at 1264.319 kb on - strand at 1264.345 kb on - strand at 1264.348 kb on - strand at 1264.348 kb on - strand at 1264.348 kb on - strand at 1264.353 kb on + strand at 1264.353 kb on + strand at 1264.419 kb on - strand, within DDA3937_RS05655 at 1264.458 kb on - strand, within DDA3937_RS05655 at 1264.469 kb on + strand, within DDA3937_RS05655 at 1264.470 kb on - strand, within DDA3937_RS05655 at 1264.505 kb on - strand, within DDA3937_RS05655 at 1264.517 kb on + strand, within DDA3937_RS05655 at 1264.517 kb on + strand, within DDA3937_RS05655 at 1264.518 kb on - strand, within DDA3937_RS05655 at 1264.556 kb on + strand, within DDA3937_RS05655 at 1264.556 kb on + strand, within DDA3937_RS05655 at 1264.584 kb on - strand, within DDA3937_RS05655 at 1264.650 kb on + strand at 1264.650 kb on + strand at 1264.651 kb on - strand at 1264.651 kb on - strand at 1264.651 kb on - strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.697 kb on + strand at 1264.698 kb on - strand at 1264.724 kb on - strand at 1264.724 kb on - strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.730 kb on + strand at 1264.730 kb on + strand at 1264.730 kb on + strand at 1264.731 kb on - strand at 1264.731 kb on - strand at 1264.731 kb on - strand at 1264.731 kb on - strand at 1264.745 kb on + strand at 1264.745 kb on + strand at 1264.773 kb on - strand at 1264.778 kb on + strand at 1264.778 kb on + strand at 1264.778 kb on + strand at 1264.778 kb on + strand at 1264.779 kb on - strand at 1264.785 kb on - strand at 1264.824 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.832 kb on + strand at 1264.832 kb on + strand at 1264.882 kb on - strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.903 kb on - strand at 1264.903 kb on - strand at 1264.903 kb on - strand at 1265.000 kb on - strand at 1265.006 kb on + strand at 1265.006 kb on + strand at 1265.006 kb on + strand at 1265.007 kb on - strand at 1265.007 kb on - strand at 1265.149 kb on + strand, within DDA3937_RS05660 at 1265.149 kb on + strand, within DDA3937_RS05660 at 1265.149 kb on + strand, within DDA3937_RS05660 at 1265.149 kb on + strand at 1265.150 kb on - strand, within DDA3937_RS05660 at 1265.150 kb on - strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.212 kb on + strand, within DDA3937_RS05660 at 1265.213 kb on - strand, within DDA3937_RS05660 at 1265.213 kb on - strand, within DDA3937_RS05660 at 1265.213 kb on - strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.311 kb on - strand, within DDA3937_RS05660 at 1265.311 kb on - strand, within DDA3937_RS05660 at 1265.311 kb on - strand, within DDA3937_RS05660 at 1265.314 kb on + strand, within DDA3937_RS05660 at 1265.314 kb on + strand, within DDA3937_RS05660 at 1265.315 kb on - strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,263,418 + DDA3937_RS05650 0.68 -1.6 1,263,747 - DDA3937_RS05650 0.82 -3.0 1,264,142 - +0.6 1,264,142 - +0.1 1,264,185 + +0.5 1,264,219 - +1.5 1,264,223 - +0.6 1,264,312 + -0.4 1,264,312 + -1.6 1,264,318 + -0.7 1,264,318 + -0.9 1,264,318 + +0.0 1,264,319 - -0.7 1,264,345 - +0.3 1,264,348 - +0.6 1,264,348 - -0.2 1,264,348 - +0.8 1,264,353 + +1.0 1,264,353 + +0.7 1,264,419 - DDA3937_RS05655 0.16 -1.0 1,264,458 - DDA3937_RS05655 0.31 -0.5 1,264,469 + DDA3937_RS05655 0.35 -1.1 1,264,470 - DDA3937_RS05655 0.35 -2.2 1,264,505 - DDA3937_RS05655 0.48 -0.5 1,264,517 + DDA3937_RS05655 0.52 -0.4 1,264,517 + DDA3937_RS05655 0.52 -0.2 1,264,518 - DDA3937_RS05655 0.53 -0.3 1,264,556 + DDA3937_RS05655 0.67 -1.4 1,264,556 + DDA3937_RS05655 0.67 -0.1 1,264,584 - DDA3937_RS05655 0.77 -0.0 1,264,650 + -1.1 1,264,650 + +0.6 1,264,651 - -0.4 1,264,651 - -0.2 1,264,651 - +0.4 1,264,652 + +0.6 1,264,652 + +0.6 1,264,652 + -0.1 1,264,652 + -0.5 1,264,652 + +1.0 1,264,652 + +0.3 1,264,652 + +0.3 1,264,652 + +0.1 1,264,653 - +1.3 1,264,653 - -0.1 1,264,653 - +1.0 1,264,653 - +0.4 1,264,653 - +0.4 1,264,653 - -0.4 1,264,653 - +0.0 1,264,653 - -1.1 1,264,653 - +0.9 1,264,653 - +0.3 1,264,697 + -0.0 1,264,698 - +0.9 1,264,724 - -0.8 1,264,724 - -0.6 1,264,728 + +0.1 1,264,728 + -0.6 1,264,728 + +0.8 1,264,728 + +0.3 1,264,728 + -0.0 1,264,729 - -1.2 1,264,729 - +0.6 1,264,729 - +1.6 1,264,729 - +1.1 1,264,729 - -0.2 1,264,730 + +1.3 1,264,730 + +1.3 1,264,730 + -0.7 1,264,731 - +0.0 1,264,731 - -0.6 1,264,731 - -2.3 1,264,731 - -0.8 1,264,745 + -0.5 1,264,745 + +0.6 1,264,773 - +0.3 1,264,778 + +1.9 1,264,778 + -0.1 1,264,778 + +0.6 1,264,778 + +0.2 1,264,779 - -0.0 1,264,785 - +0.2 1,264,824 + -0.7 1,264,826 + -0.6 1,264,826 + +0.8 1,264,826 + -0.2 1,264,826 + -1.3 1,264,826 + +0.4 1,264,832 + +0.2 1,264,832 + -0.8 1,264,882 - +0.5 1,264,902 + +0.7 1,264,902 + -0.1 1,264,902 + +0.2 1,264,902 + +0.9 1,264,902 + +1.7 1,264,903 - +2.0 1,264,903 - +0.3 1,264,903 - +0.3 1,265,000 - -0.0 1,265,006 + +0.1 1,265,006 + -0.3 1,265,006 + +0.5 1,265,007 - -2.0 1,265,007 - +0.5 1,265,149 + DDA3937_RS05660 0.13 +1.4 1,265,149 + DDA3937_RS05660 0.13 +1.0 1,265,149 + DDA3937_RS05660 0.13 -1.0 1,265,149 + +0.3 1,265,150 - DDA3937_RS05660 0.13 +1.5 1,265,150 - DDA3937_RS05660 0.13 +0.5 1,265,151 + DDA3937_RS05660 0.13 -0.4 1,265,151 + DDA3937_RS05660 0.13 +0.1 1,265,151 + DDA3937_RS05660 0.13 +0.2 1,265,151 + DDA3937_RS05660 0.13 -1.1 1,265,152 - DDA3937_RS05660 0.13 -0.7 1,265,152 - DDA3937_RS05660 0.13 -0.1 1,265,152 - DDA3937_RS05660 0.13 +0.1 1,265,152 - DDA3937_RS05660 0.13 -0.3 1,265,152 - DDA3937_RS05660 0.13 +1.8 1,265,212 + DDA3937_RS05660 0.16 +0.3 1,265,213 - DDA3937_RS05660 0.16 -1.2 1,265,213 - DDA3937_RS05660 0.16 -0.9 1,265,213 - DDA3937_RS05660 0.16 -0.0 1,265,310 + DDA3937_RS05660 0.22 +0.9 1,265,310 + DDA3937_RS05660 0.22 -0.3 1,265,310 + DDA3937_RS05660 0.22 +0.5 1,265,310 + DDA3937_RS05660 0.22 -0.2 1,265,310 + DDA3937_RS05660 0.22 -0.4 1,265,310 + DDA3937_RS05660 0.22 +0.4 1,265,310 + DDA3937_RS05660 0.22 -0.4 1,265,310 + DDA3937_RS05660 0.22 -0.7 1,265,311 - DDA3937_RS05660 0.22 +0.7 1,265,311 - DDA3937_RS05660 0.22 +0.7 1,265,311 - DDA3937_RS05660 0.22 +0.3 1,265,314 + DDA3937_RS05660 0.22 +0.3 1,265,314 + DDA3937_RS05660 0.22 +1.2 1,265,315 - DDA3937_RS05660 0.22 -1.3 1,265,381 + DDA3937_RS05660 0.25 +0.3 1,265,381 + DDA3937_RS05660 0.25 +0.9 1,265,381 + DDA3937_RS05660 0.25 +0.3 1,265,381 + DDA3937_RS05660 0.25 +0.5 1,265,381 + DDA3937_RS05660 0.25 +0.7 1,265,605 + DDA3937_RS05660 0.37 +1.0 1,265,605 + DDA3937_RS05660 0.37 +0.9 1,265,605 + DDA3937_RS05660 0.37 +0.0 1,265,605 + DDA3937_RS05660 0.37 -1.3 1,265,605 + DDA3937_RS05660 0.37 +0.7 1,265,605 + DDA3937_RS05660 0.37 -0.2 1,265,605 + -1.3 1,265,605 + DDA3937_RS05660 0.37 +0.9 1,265,606 - DDA3937_RS05660 0.37 -3.2 1,265,606 - DDA3937_RS05660 0.37 +1.3 1,265,606 - DDA3937_RS05660 0.37 +0.3 1,265,606 - DDA3937_RS05660 0.37 -0.9 1,265,606 - DDA3937_RS05660 0.37 +0.5 1,265,606 - DDA3937_RS05660 0.37 -0.0 1,265,607 + DDA3937_RS05660 0.37 +0.3 1,265,607 + DDA3937_RS05660 0.37 -0.4 1,265,607 + DDA3937_RS05660 0.37 +0.4 1,265,607 + DDA3937_RS05660 0.37 +0.2 1,265,608 - DDA3937_RS05660 0.37 +1.6 1,265,608 - DDA3937_RS05660 0.37 -0.6 1,265,608 - DDA3937_RS05660 0.37 +0.2 1,265,608 - DDA3937_RS05660 0.37 -0.7
Or see this region's nucleotide sequence