Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05655

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,263,418	+		DDA3937_RS05650	0.68	-1.6
1,263,747	-		DDA3937_RS05650	0.82	-3.0
1,264,142	-				+0.6
1,264,142	-				+0.1
1,264,185	+				+0.5
1,264,219	-				+1.5
1,264,223	-				+0.6
1,264,312	+				-0.4
1,264,312	+				-1.6
1,264,318	+				-0.7
1,264,318	+				-0.9
1,264,318	+				+0.0
1,264,319	-				-0.7
1,264,345	-				+0.3
1,264,348	-				+0.6
1,264,348	-				-0.2
1,264,348	-				+0.8
1,264,353	+				+1.0
1,264,353	+				+0.7
1,264,419	-		DDA3937_RS05655	0.16	-1.0
1,264,458	-		DDA3937_RS05655	0.31	-0.5
1,264,469	+		DDA3937_RS05655	0.35	-1.1
1,264,470	-		DDA3937_RS05655	0.35	-2.2
1,264,505	-		DDA3937_RS05655	0.48	-0.5
1,264,517	+		DDA3937_RS05655	0.52	-0.4
1,264,517	+		DDA3937_RS05655	0.52	-0.2
1,264,518	-		DDA3937_RS05655	0.53	-0.3
1,264,556	+		DDA3937_RS05655	0.67	-1.4
1,264,556	+		DDA3937_RS05655	0.67	-0.1
1,264,584	-		DDA3937_RS05655	0.77	-0.0
1,264,650	+				-1.1
1,264,650	+				+0.6
1,264,651	-				-0.4
1,264,651	-				-0.2
1,264,651	-				+0.4
1,264,652	+				+0.6
1,264,652	+				+0.6
1,264,652	+				-0.1
1,264,652	+				-0.5
1,264,652	+				+1.0
1,264,652	+				+0.3
1,264,652	+				+0.3
1,264,652	+				+0.1
1,264,653	-				+1.3
1,264,653	-				-0.1
1,264,653	-				+1.0
1,264,653	-				+0.4
1,264,653	-				+0.4
1,264,653	-				-0.4
1,264,653	-				+0.0
1,264,653	-				-1.1
1,264,653	-				+0.9
1,264,653	-				+0.3
1,264,697	+				-0.0
1,264,698	-				+0.9
1,264,724	-				-0.8
1,264,724	-				-0.6
1,264,728	+				+0.1
1,264,728	+				-0.6
1,264,728	+				+0.8
1,264,728	+				+0.3
1,264,728	+				-0.0
1,264,729	-				-1.2
1,264,729	-				+0.6
1,264,729	-				+1.6
1,264,729	-				+1.1
1,264,729	-				-0.2
1,264,730	+				+1.3
1,264,730	+				+1.3
1,264,730	+				-0.7
1,264,731	-				+0.0
1,264,731	-				-0.6
1,264,731	-				-2.3
1,264,731	-				-0.8
1,264,745	+				-0.5
1,264,745	+				+0.6
1,264,773	-				+0.3
1,264,778	+				+1.9
1,264,778	+				-0.1
1,264,778	+				+0.6
1,264,778	+				+0.2
1,264,779	-				-0.0
1,264,785	-				+0.2
1,264,824	+				-0.7
1,264,826	+				-0.6
1,264,826	+				+0.8
1,264,826	+				-0.2
1,264,826	+				-1.3
1,264,826	+				+0.4
1,264,832	+				+0.2
1,264,832	+				-0.8
1,264,882	-				+0.5
1,264,902	+				+0.7
1,264,902	+				-0.1
1,264,902	+				+0.2
1,264,902	+				+0.9
1,264,902	+				+1.7
1,264,903	-				+2.0
1,264,903	-				+0.3
1,264,903	-				+0.3
1,265,000	-				-0.0
1,265,006	+				+0.1
1,265,006	+				-0.3
1,265,006	+				+0.5
1,265,007	-				-2.0
1,265,007	-				+0.5
1,265,149	+		DDA3937_RS05660	0.13	+1.4
1,265,149	+		DDA3937_RS05660	0.13	+1.0
1,265,149	+		DDA3937_RS05660	0.13	-1.0
1,265,149	+				+0.3
1,265,150	-		DDA3937_RS05660	0.13	+1.5
1,265,150	-		DDA3937_RS05660	0.13	+0.5
1,265,151	+		DDA3937_RS05660	0.13	-0.4
1,265,151	+		DDA3937_RS05660	0.13	+0.1
1,265,151	+		DDA3937_RS05660	0.13	+0.2
1,265,151	+		DDA3937_RS05660	0.13	-1.1
1,265,152	-		DDA3937_RS05660	0.13	-0.7
1,265,152	-		DDA3937_RS05660	0.13	-0.1
1,265,152	-		DDA3937_RS05660	0.13	+0.1
1,265,152	-		DDA3937_RS05660	0.13	-0.3
1,265,152	-		DDA3937_RS05660	0.13	+1.8
1,265,212	+		DDA3937_RS05660	0.16	+0.3
1,265,213	-		DDA3937_RS05660	0.16	-1.2
1,265,213	-		DDA3937_RS05660	0.16	-0.9
1,265,213	-		DDA3937_RS05660	0.16	-0.0
1,265,310	+		DDA3937_RS05660	0.22	+0.9
1,265,310	+		DDA3937_RS05660	0.22	-0.3
1,265,310	+		DDA3937_RS05660	0.22	+0.5
1,265,310	+		DDA3937_RS05660	0.22	-0.2
1,265,310	+		DDA3937_RS05660	0.22	-0.4
1,265,310	+		DDA3937_RS05660	0.22	+0.4
1,265,310	+		DDA3937_RS05660	0.22	-0.4
1,265,310	+		DDA3937_RS05660	0.22	-0.7
1,265,311	-		DDA3937_RS05660	0.22	+0.7
1,265,311	-		DDA3937_RS05660	0.22	+0.7
1,265,311	-		DDA3937_RS05660	0.22	+0.3
1,265,314	+		DDA3937_RS05660	0.22	+0.3
1,265,314	+		DDA3937_RS05660	0.22	+1.2
1,265,315	-		DDA3937_RS05660	0.22	-1.3
1,265,381	+		DDA3937_RS05660	0.25	+0.3
1,265,381	+		DDA3937_RS05660	0.25	+0.9
1,265,381	+		DDA3937_RS05660	0.25	+0.3
1,265,381	+		DDA3937_RS05660	0.25	+0.5
1,265,381	+		DDA3937_RS05660	0.25	+0.7
1,265,605	+		DDA3937_RS05660	0.37	+1.0
1,265,605	+		DDA3937_RS05660	0.37	+0.9
1,265,605	+		DDA3937_RS05660	0.37	+0.0
1,265,605	+		DDA3937_RS05660	0.37	-1.3
1,265,605	+		DDA3937_RS05660	0.37	+0.7
1,265,605	+		DDA3937_RS05660	0.37	-0.2
1,265,605	+				-1.3
1,265,605	+		DDA3937_RS05660	0.37	+0.9
1,265,606	-		DDA3937_RS05660	0.37	-3.2
1,265,606	-		DDA3937_RS05660	0.37	+1.3
1,265,606	-		DDA3937_RS05660	0.37	+0.3
1,265,606	-		DDA3937_RS05660	0.37	-0.9
1,265,606	-		DDA3937_RS05660	0.37	+0.5
1,265,606	-		DDA3937_RS05660	0.37	-0.0
1,265,607	+		DDA3937_RS05660	0.37	+0.3
1,265,607	+		DDA3937_RS05660	0.37	-0.4
1,265,607	+		DDA3937_RS05660	0.37	+0.4
1,265,607	+		DDA3937_RS05660	0.37	+0.2
1,265,608	-		DDA3937_RS05660	0.37	+1.6
1,265,608	-		DDA3937_RS05660	0.37	-0.6
1,265,608	-		DDA3937_RS05660	0.37	+0.2
1,265,608	-		DDA3937_RS05660	0.37	-0.7