Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05200

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05195 and DDA3937_RS05200 are separated by 186 nucleotidesDDA3937_RS05200 and DDA3937_RS05205 overlap by 11 nucleotides DDA3937_RS05195: DDA3937_RS05195 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,160,726 to 1,161,685 _RS05195 DDA3937_RS05200: DDA3937_RS05200 - VOC family protein, at 1,161,872 to 1,162,261 _RS05200 DDA3937_RS05205: DDA3937_RS05205 - tRNA lysidine(34) synthetase TilS, at 1,162,251 to 1,163,579 _RS05205 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -2 -1 0 1at 1161.677 kb on + strandat 1161.689 kb on - strandat 1161.697 kb on - strandat 1161.699 kb on - strandat 1161.743 kb on + strandat 1161.961 kb on + strand, within DDA3937_RS05200at 1162.031 kb on + strand, within DDA3937_RS05200at 1162.031 kb on + strand, within DDA3937_RS05200at 1162.193 kb on + strand, within DDA3937_RS05200at 1162.194 kb on - strand, within DDA3937_RS05200at 1162.194 kb on - strand, within DDA3937_RS05200at 1162.194 kb on - strand, within DDA3937_RS05200at 1162.250 kb on + strandat 1162.250 kb on + strandat 1162.250 kb on + strandat 1162.250 kb on + strandat 1162.251 kb on - strandat 1162.251 kb on - strandat 1162.251 kb on - strandat 1162.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,161,677 + -1.6
1,161,689 - +0.6
1,161,697 - -1.0
1,161,699 - -0.5
1,161,743 + +0.1
1,161,961 + DDA3937_RS05200 0.23 -0.4
1,162,031 + DDA3937_RS05200 0.41 -0.4
1,162,031 + DDA3937_RS05200 0.41 +0.7
1,162,193 + DDA3937_RS05200 0.82 +0.4
1,162,194 - DDA3937_RS05200 0.83 -0.2
1,162,194 - DDA3937_RS05200 0.83 +0.4
1,162,194 - DDA3937_RS05200 0.83 -0.1
1,162,250 + +1.1
1,162,250 + -1.2
1,162,250 + -0.3
1,162,250 + -0.6
1,162,251 - -0.1
1,162,251 - -2.0
1,162,251 - -0.6
1,162,251 - -1.0

Or see this region's nucleotide sequence