Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05190 and DDA3937_RS05195 are separated by 12 nucleotides DDA3937_RS05195 and DDA3937_RS05200 are separated by 186 nucleotides DDA3937_RS05200 and DDA3937_RS05205 overlap by 11 nucleotides
DDA3937_RS05190: DDA3937_RS05190 - DNA polymerase III subunit alpha, at 1,157,231 to 1,160,713
_RS05190
DDA3937_RS05195: DDA3937_RS05195 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,160,726 to 1,161,685
_RS05195
DDA3937_RS05200: DDA3937_RS05200 - VOC family protein, at 1,161,872 to 1,162,261
_RS05200
DDA3937_RS05205: DDA3937_RS05205 - tRNA lysidine(34) synthetase TilS, at 1,162,251 to 1,163,579
_RS05205
Position (kb)
1160
1161
1162 Strain fitness (log2 ratio)
-2
-1
0
1 at 1160.711 kb on + strand at 1161.677 kb on + strand at 1161.689 kb on - strand at 1161.697 kb on - strand at 1161.699 kb on - strand at 1161.743 kb on + strand at 1161.961 kb on + strand, within DDA3937_RS05200 at 1162.031 kb on + strand, within DDA3937_RS05200 at 1162.031 kb on + strand, within DDA3937_RS05200 at 1162.193 kb on + strand, within DDA3937_RS05200 at 1162.194 kb on - strand, within DDA3937_RS05200 at 1162.194 kb on - strand, within DDA3937_RS05200 at 1162.194 kb on - strand, within DDA3937_RS05200 at 1162.250 kb on + strand at 1162.250 kb on + strand at 1162.250 kb on + strand at 1162.250 kb on + strand at 1162.251 kb on - strand at 1162.251 kb on - strand at 1162.251 kb on - strand at 1162.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,160,711 + +0.6 1,161,677 + -1.6 1,161,689 - +0.6 1,161,697 - -1.0 1,161,699 - -0.5 1,161,743 + +0.1 1,161,961 + DDA3937_RS05200 0.23 -0.4 1,162,031 + DDA3937_RS05200 0.41 -0.4 1,162,031 + DDA3937_RS05200 0.41 +0.7 1,162,193 + DDA3937_RS05200 0.82 +0.4 1,162,194 - DDA3937_RS05200 0.83 -0.2 1,162,194 - DDA3937_RS05200 0.83 +0.4 1,162,194 - DDA3937_RS05200 0.83 -0.1 1,162,250 + +1.1 1,162,250 + -1.2 1,162,250 + -0.3 1,162,250 + -0.6 1,162,251 - -0.1 1,162,251 - -2.0 1,162,251 - -0.6 1,162,251 - -1.0
Or see this region's nucleotide sequence