Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04420 and DDA3937_RS04425 are separated by 83 nucleotides DDA3937_RS04425 and DDA3937_RS04430 are separated by 688 nucleotides
DDA3937_RS04420: DDA3937_RS04420 - Dyp-type peroxidase, at 975,939 to 976,838
_RS04420
DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803
_RS04425
DDA3937_RS04430: DDA3937_RS04430 - Hcp family type VI secretion system effector, at 978,492 to 978,971
_RS04430
Position (kb) 976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 975.959 kb on + strand at 976.001 kb on + strand at 976.002 kb on - strand at 976.002 kb on - strand at 976.006 kb on + strand at 976.007 kb on - strand at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.040 kb on + strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.041 kb on - strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.446 kb on + strand, within DDA3937_RS04420 at 976.678 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.690 kb on - strand, within DDA3937_RS04420 at 976.705 kb on - strand, within DDA3937_RS04420 at 976.763 kb on + strand at 976.764 kb on - strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.797 kb on + strand at 976.798 kb on - strand at 976.825 kb on + strand at 976.825 kb on + strand at 976.826 kb on - strand at 976.826 kb on - strand at 976.834 kb on + strand at 976.856 kb on - strand at 976.938 kb on + strand at 976.952 kb on - strand at 976.968 kb on + strand at 976.969 kb on - strand at 977.096 kb on - strand, within DDA3937_RS04425 at 977.268 kb on - strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.777 kb on + strand at 977.777 kb on + strand at 977.853 kb on + strand at 977.853 kb on + strand at 977.866 kb on + strand at 977.867 kb on - strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.005 kb on + strand at 978.006 kb on - strand at 978.018 kb on + strand at 978.018 kb on + strand at 978.019 kb on - strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.087 kb on - strand at 978.087 kb on - strand at 978.088 kb on + strand at 978.088 kb on + strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.210 kb on + strand at 978.397 kb on - strand at 978.400 kb on + strand at 978.400 kb on + strand at 978.401 kb on - strand at 978.401 kb on - strand at 978.437 kb on - strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.539 kb on + strand at 978.644 kb on - strand, within DDA3937_RS04430 at 978.648 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.789 kb on + strand, within DDA3937_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 975,959 + -0.3 976,001 + -0.2 976,002 - +0.4 976,002 - -2.4 976,006 + -1.1 976,007 - -0.9 976,040 + DDA3937_RS04420 0.11 -0.2 976,040 + DDA3937_RS04420 0.11 -0.0 976,040 + DDA3937_RS04420 0.11 -0.4 976,040 + DDA3937_RS04420 0.11 -0.3 976,040 + DDA3937_RS04420 0.11 -0.2 976,041 - DDA3937_RS04420 0.11 +0.4 976,041 - DDA3937_RS04420 0.11 -0.2 976,446 + DDA3937_RS04420 0.56 +0.6 976,446 + DDA3937_RS04420 0.56 -0.3 976,446 + DDA3937_RS04420 0.56 -1.0 976,446 + DDA3937_RS04420 0.56 -0.6 976,446 + DDA3937_RS04420 0.56 -0.7 976,446 + DDA3937_RS04420 0.56 +0.3 976,446 + DDA3937_RS04420 0.56 -0.8 976,678 - DDA3937_RS04420 0.82 -0.4 976,690 - DDA3937_RS04420 0.83 +0.8 976,690 - DDA3937_RS04420 0.83 -1.0 976,705 - DDA3937_RS04420 0.85 -0.2 976,763 + -0.5 976,764 - -0.7 976,797 + -0.7 976,797 + -0.2 976,797 + +0.4 976,798 - -0.2 976,825 + +0.2 976,825 + -0.9 976,826 - +0.2 976,826 - -0.9 976,834 + -0.1 976,856 - +0.1 976,938 + +0.4 976,952 - +0.1 976,968 + -0.7 976,969 - +0.8 977,096 - DDA3937_RS04425 0.20 -0.3 977,268 - DDA3937_RS04425 0.39 -1.9 977,503 + DDA3937_RS04425 0.66 +0.0 977,503 + DDA3937_RS04425 0.66 -1.0 977,567 + DDA3937_RS04425 0.73 -3.0 977,567 + DDA3937_RS04425 0.73 -1.6 977,567 + DDA3937_RS04425 0.73 -0.9 977,567 + DDA3937_RS04425 0.73 -1.2 977,567 + DDA3937_RS04425 0.73 +0.4 977,567 + DDA3937_RS04425 0.73 -0.5 977,567 + DDA3937_RS04425 0.73 -1.4 977,567 + DDA3937_RS04425 0.73 -1.7 977,568 - DDA3937_RS04425 0.73 +1.2 977,568 - DDA3937_RS04425 0.73 +0.1 977,568 - DDA3937_RS04425 0.73 -0.8 977,568 - DDA3937_RS04425 0.73 +0.8 977,568 - DDA3937_RS04425 0.73 -0.8 977,568 - DDA3937_RS04425 0.73 -0.5 977,569 + DDA3937_RS04425 0.73 -0.9 977,569 + DDA3937_RS04425 0.73 -0.9 977,569 + DDA3937_RS04425 0.73 -1.6 977,570 - DDA3937_RS04425 0.73 -0.6 977,570 - DDA3937_RS04425 0.73 +0.4 977,570 - DDA3937_RS04425 0.73 -2.4 977,608 + DDA3937_RS04425 0.78 -0.4 977,608 + DDA3937_RS04425 0.78 +0.6 977,608 + DDA3937_RS04425 0.78 -1.4 977,608 + DDA3937_RS04425 0.78 -1.9 977,608 + DDA3937_RS04425 0.78 -3.3 977,614 + DDA3937_RS04425 0.78 +0.1 977,614 + DDA3937_RS04425 0.78 -0.2 977,615 - DDA3937_RS04425 0.79 -0.7 977,615 - DDA3937_RS04425 0.79 -1.6 977,777 + +0.3 977,777 + -0.9 977,853 + +0.3 977,853 + -0.3 977,866 + +1.5 977,867 - -0.6 978,001 + -0.2 978,001 + +0.4 978,001 + +0.2 978,002 - +0.2 978,002 - -0.9 978,002 - -0.6 978,002 - -0.1 978,005 + +0.2 978,006 - -0.8 978,018 + -1.0 978,018 + -2.5 978,019 - -0.2 978,050 + +0.3 978,050 + -0.9 978,050 + -0.0 978,050 + -0.5 978,050 + -0.0 978,051 - -0.8 978,051 - +0.0 978,051 - -1.2 978,051 - -0.4 978,051 - -0.9 978,051 - -0.7 978,051 - +0.4 978,086 + -0.4 978,086 + -0.7 978,086 + +0.2 978,087 - -0.4 978,087 - -0.4 978,088 + -0.1 978,088 + +0.2 978,089 - -0.3 978,089 - -0.0 978,089 - -0.8 978,089 - -0.3 978,092 - -0.9 978,092 - -0.4 978,092 - -0.4 978,210 + -0.2 978,397 - -0.3 978,400 + -0.8 978,400 + +0.3 978,401 - -0.2 978,401 - -0.2 978,437 - -0.7 978,518 + -2.4 978,518 + +1.2 978,519 - +0.0 978,539 + -1.7 978,644 - DDA3937_RS04430 0.32 +0.2 978,648 - DDA3937_RS04430 0.33 -0.3 978,659 - DDA3937_RS04430 0.35 -0.8 978,659 - DDA3937_RS04430 0.35 -1.3 978,789 + DDA3937_RS04430 0.62 -1.6
Or see this region's nucleotide sequence