Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04105 and DDA3937_RS04110 are separated by 110 nucleotides DDA3937_RS04110 and DDA3937_RS04115 are separated by 840 nucleotides
DDA3937_RS04105: DDA3937_RS04105 - type VI secretion system tip protein VgrG, at 912,129 to 913,982
_RS04105
DDA3937_RS04110: DDA3937_RS04110 - Hcp family type VI secretion system effector, at 914,093 to 914,611
_RS04110
DDA3937_RS04115: DDA3937_RS04115 - site-specific integrase, at 915,452 to 916,543
_RS04115
Position (kb) 914
915 Strain fitness (log2 ratio) -2
-1
0
1 at 913.166 kb on + strand, within DDA3937_RS04105 at 913.222 kb on + strand, within DDA3937_RS04105 at 913.222 kb on + strand, within DDA3937_RS04105 at 913.223 kb on - strand, within DDA3937_RS04105 at 913.223 kb on - strand, within DDA3937_RS04105 at 913.223 kb on - strand, within DDA3937_RS04105 at 913.276 kb on + strand, within DDA3937_RS04105 at 913.297 kb on + strand, within DDA3937_RS04105 at 913.297 kb on + strand, within DDA3937_RS04105 at 913.298 kb on - strand, within DDA3937_RS04105 at 913.357 kb on + strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.478 kb on - strand, within DDA3937_RS04105 at 913.996 kb on + strand at 914.170 kb on - strand, within DDA3937_RS04110 at 914.595 kb on + strand at 914.595 kb on + strand at 914.611 kb on + strand at 914.611 kb on + strand at 914.639 kb on - strand at 914.726 kb on + strand at 914.796 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.867 kb on + strand at 914.868 kb on - strand at 915.033 kb on - strand at 915.068 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.103 kb on - strand at 915.103 kb on - strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.146 kb on - strand at 915.151 kb on + strand at 915.152 kb on - strand at 915.154 kb on + strand at 915.155 kb on - strand at 915.179 kb on - strand at 915.191 kb on + strand at 915.192 kb on - strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.267 kb on - strand at 915.267 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.283 kb on - strand at 915.321 kb on + strand at 915.321 kb on + strand at 915.399 kb on + strand at 915.553 kb on + strand at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 913,166 + DDA3937_RS04105 0.56 +0.4 913,222 + DDA3937_RS04105 0.59 +0.4 913,222 + DDA3937_RS04105 0.59 -1.9 913,223 - DDA3937_RS04105 0.59 +0.0 913,223 - DDA3937_RS04105 0.59 -0.1 913,223 - DDA3937_RS04105 0.59 +0.8 913,276 + DDA3937_RS04105 0.62 +0.7 913,297 + DDA3937_RS04105 0.63 +0.0 913,297 + DDA3937_RS04105 0.63 +1.7 913,298 - DDA3937_RS04105 0.63 +0.6 913,357 + DDA3937_RS04105 0.66 +0.2 913,358 - DDA3937_RS04105 0.66 +0.2 913,358 - DDA3937_RS04105 0.66 +0.8 913,358 - DDA3937_RS04105 0.66 -0.2 913,358 - DDA3937_RS04105 0.66 +0.4 913,358 - DDA3937_RS04105 0.66 +0.2 913,358 - DDA3937_RS04105 0.66 -0.1 913,478 - DDA3937_RS04105 0.73 -0.1 913,996 + +1.6 914,170 - DDA3937_RS04110 0.15 +0.3 914,595 + +0.6 914,595 + +0.4 914,611 + -1.6 914,611 + -1.0 914,639 - -1.1 914,726 + +0.1 914,796 + +0.3 914,864 + +1.2 914,864 + -0.6 914,864 + +0.4 914,867 + +0.2 914,868 - +0.3 915,033 - -1.4 915,068 + -1.1 915,102 + -0.9 915,102 + -1.6 915,102 + +0.0 915,102 + +0.9 915,103 - +0.7 915,103 - -1.4 915,141 + +0.4 915,141 + -0.7 915,141 + +0.2 915,141 + +1.0 915,141 + -1.1 915,141 + -0.4 915,141 + -1.3 915,142 - -0.6 915,142 - +1.0 915,142 - -1.5 915,146 - -0.3 915,151 + +0.8 915,152 - -0.8 915,154 + -0.1 915,155 - -1.1 915,179 - -0.9 915,191 + +0.3 915,192 - -0.9 915,266 + -1.4 915,266 + +1.4 915,266 + -0.4 915,266 + -0.6 915,266 + +0.1 915,267 - -1.6 915,267 - -0.3 915,281 - -1.2 915,281 - -0.4 915,281 - +0.1 915,281 - -0.1 915,283 - -0.2 915,321 + +1.3 915,321 + -0.3 915,399 + +0.2 915,553 + -1.2 915,594 + DDA3937_RS04115 0.13 +0.1 915,594 + DDA3937_RS04115 0.13 -0.6 915,594 + DDA3937_RS04115 0.13 -0.2 915,595 - DDA3937_RS04115 0.13 +0.4 915,595 - DDA3937_RS04115 0.13 -0.9
Or see this region's nucleotide sequence