Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03750 and DDA3937_RS03755 are separated by 180 nucleotides DDA3937_RS03755 and DDA3937_RS03760 are separated by 27 nucleotides
DDA3937_RS03750: DDA3937_RS03750 - LysR family transcriptional regulator, at 830,808 to 831,731
_RS03750
DDA3937_RS03755: DDA3937_RS03755 - MFS transporter, at 831,912 to 833,126
_RS03755
DDA3937_RS03760: DDA3937_RS03760 - o-succinylbenzoate synthase, at 833,154 to 834,266
_RS03760
Position (kb) 831
832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 830.926 kb on - strand, within DDA3937_RS03750 at 830.926 kb on - strand, within DDA3937_RS03750 at 830.958 kb on - strand, within DDA3937_RS03750 at 830.974 kb on + strand, within DDA3937_RS03750 at 831.079 kb on - strand, within DDA3937_RS03750 at 831.079 kb on - strand, within DDA3937_RS03750 at 831.346 kb on - strand, within DDA3937_RS03750 at 831.359 kb on + strand, within DDA3937_RS03750 at 831.361 kb on + strand, within DDA3937_RS03750 at 831.361 kb on + strand, within DDA3937_RS03750 at 831.361 kb on + strand, within DDA3937_RS03750 at 831.362 kb on - strand, within DDA3937_RS03750 at 831.362 kb on - strand, within DDA3937_RS03750 at 831.362 kb on - strand, within DDA3937_RS03750 at 831.362 kb on - strand, within DDA3937_RS03750 at 831.367 kb on + strand, within DDA3937_RS03750 at 831.401 kb on + strand, within DDA3937_RS03750 at 831.438 kb on + strand, within DDA3937_RS03750 at 831.438 kb on + strand at 831.438 kb on + strand, within DDA3937_RS03750 at 831.438 kb on + strand, within DDA3937_RS03750 at 831.438 kb on + strand, within DDA3937_RS03750 at 831.439 kb on - strand, within DDA3937_RS03750 at 831.439 kb on - strand, within DDA3937_RS03750 at 831.439 kb on - strand, within DDA3937_RS03750 at 831.439 kb on - strand, within DDA3937_RS03750 at 831.517 kb on + strand, within DDA3937_RS03750 at 831.517 kb on + strand, within DDA3937_RS03750 at 831.555 kb on - strand, within DDA3937_RS03750 at 831.694 kb on + strand at 831.719 kb on - strand at 831.792 kb on + strand at 831.793 kb on - strand at 831.815 kb on + strand at 831.815 kb on + strand at 831.815 kb on + strand at 831.815 kb on + strand at 831.816 kb on - strand at 831.816 kb on - strand at 831.816 kb on - strand at 831.816 kb on - strand at 831.816 kb on - strand at 831.867 kb on - strand at 831.867 kb on - strand at 831.918 kb on + strand at 831.919 kb on - strand at 831.921 kb on + strand at 831.921 kb on + strand at 831.922 kb on - strand at 831.939 kb on + strand at 831.939 kb on + strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.960 kb on + strand at 831.960 kb on + strand at 831.960 kb on + strand at 831.960 kb on + strand at 831.961 kb on - strand at 831.961 kb on - strand at 831.961 kb on - strand at 831.961 kb on - strand at 831.961 kb on - strand at 831.961 kb on - strand at 831.961 kb on - strand at 831.963 kb on - strand at 831.983 kb on + strand at 832.004 kb on + strand at 832.005 kb on - strand at 832.178 kb on + strand, within DDA3937_RS03755 at 832.179 kb on - strand, within DDA3937_RS03755 at 832.179 kb on - strand, within DDA3937_RS03755 at 832.217 kb on - strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.345 kb on - strand at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.455 kb on + strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.457 kb on + strand, within DDA3937_RS03755 at 832.458 kb on - strand, within DDA3937_RS03755 at 832.458 kb on - strand, within DDA3937_RS03755 at 832.553 kb on - strand, within DDA3937_RS03755 at 832.623 kb on + strand, within DDA3937_RS03755 at 832.666 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.797 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.807 kb on - strand, within DDA3937_RS03755 at 833.007 kb on + strand at 833.008 kb on - strand at 833.078 kb on + strand at 833.078 kb on + strand at 833.078 kb on + strand at 833.173 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.211 kb on - strand at 833.211 kb on - strand at 833.241 kb on + strand at 833.241 kb on + strand at 833.242 kb on - strand at 833.251 kb on + strand at 833.316 kb on + strand, within DDA3937_RS03760 at 833.316 kb on + strand, within DDA3937_RS03760 at 833.317 kb on - strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.396 kb on - strand, within DDA3937_RS03760 at 833.487 kb on + strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.557 kb on + strand, within DDA3937_RS03760 at 833.558 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.670 kb on + strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand at 833.705 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.775 kb on + strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.836 kb on + strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.936 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.048 kb on - strand, within DDA3937_RS03760
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 830,926 - DDA3937_RS03750 0.13 -0.3 830,926 - DDA3937_RS03750 0.13 -1.4 830,958 - DDA3937_RS03750 0.16 +0.8 830,974 + DDA3937_RS03750 0.18 -0.9 831,079 - DDA3937_RS03750 0.29 -0.9 831,079 - DDA3937_RS03750 0.29 -0.5 831,346 - DDA3937_RS03750 0.58 -0.2 831,359 + DDA3937_RS03750 0.60 -0.0 831,361 + DDA3937_RS03750 0.60 -0.0 831,361 + DDA3937_RS03750 0.60 -0.9 831,361 + DDA3937_RS03750 0.60 +0.1 831,362 - DDA3937_RS03750 0.60 +0.2 831,362 - DDA3937_RS03750 0.60 +0.9 831,362 - DDA3937_RS03750 0.60 +1.5 831,362 - DDA3937_RS03750 0.60 +0.1 831,367 + DDA3937_RS03750 0.60 +0.1 831,401 + DDA3937_RS03750 0.64 -0.1 831,438 + DDA3937_RS03750 0.68 -0.1 831,438 + -0.5 831,438 + DDA3937_RS03750 0.68 +0.6 831,438 + DDA3937_RS03750 0.68 -1.9 831,438 + DDA3937_RS03750 0.68 -1.1 831,439 - DDA3937_RS03750 0.68 -0.1 831,439 - DDA3937_RS03750 0.68 +1.1 831,439 - DDA3937_RS03750 0.68 -0.8 831,439 - DDA3937_RS03750 0.68 +1.2 831,517 + DDA3937_RS03750 0.77 -0.1 831,517 + DDA3937_RS03750 0.77 +0.1 831,555 - DDA3937_RS03750 0.81 +0.5 831,694 + +1.1 831,719 - +0.5 831,792 + -1.1 831,793 - +0.5 831,815 + +0.5 831,815 + -3.2 831,815 + -1.9 831,815 + -0.2 831,816 - -0.1 831,816 - +0.1 831,816 - -0.9 831,816 - +0.3 831,816 - +0.5 831,867 - -0.6 831,867 - +0.0 831,918 + +0.4 831,919 - -0.1 831,921 + -1.1 831,921 + +0.7 831,922 - +0.3 831,939 + +0.7 831,939 + +0.7 831,940 - -0.4 831,940 - -0.2 831,960 + -0.7 831,960 + -0.9 831,960 + -0.1 831,960 + -0.5 831,961 - -0.2 831,961 - -0.5 831,961 - -1.7 831,961 - -0.2 831,961 - +0.1 831,961 - -0.0 831,961 - -0.3 831,963 - -0.2 831,983 + -0.1 832,004 + +0.5 832,005 - -0.3 832,178 + DDA3937_RS03755 0.22 -0.8 832,179 - DDA3937_RS03755 0.22 +0.4 832,179 - DDA3937_RS03755 0.22 -0.2 832,217 - DDA3937_RS03755 0.25 +0.6 832,344 + DDA3937_RS03755 0.36 +0.1 832,344 + DDA3937_RS03755 0.36 -1.9 832,344 + DDA3937_RS03755 0.36 +0.1 832,344 + DDA3937_RS03755 0.36 -1.1 832,345 - -1.9 832,345 - DDA3937_RS03755 0.36 -0.2 832,345 - DDA3937_RS03755 0.36 -0.4 832,345 - DDA3937_RS03755 0.36 -0.6 832,345 - DDA3937_RS03755 0.36 +0.1 832,455 + DDA3937_RS03755 0.45 +0.5 832,456 - DDA3937_RS03755 0.45 +0.8 832,456 - DDA3937_RS03755 0.45 +1.5 832,456 - DDA3937_RS03755 0.45 -0.4 832,456 - DDA3937_RS03755 0.45 -0.2 832,456 - DDA3937_RS03755 0.45 +0.7 832,457 + DDA3937_RS03755 0.45 -0.9 832,458 - DDA3937_RS03755 0.45 -2.1 832,458 - DDA3937_RS03755 0.45 -0.7 832,553 - DDA3937_RS03755 0.53 -0.4 832,623 + DDA3937_RS03755 0.59 +0.5 832,666 + DDA3937_RS03755 0.62 +0.2 832,683 + DDA3937_RS03755 0.63 -0.2 832,683 + DDA3937_RS03755 0.63 +0.2 832,683 + DDA3937_RS03755 0.63 -0.5 832,797 + DDA3937_RS03755 0.73 +0.8 832,806 + DDA3937_RS03755 0.74 +0.9 832,806 + DDA3937_RS03755 0.74 +1.2 832,806 + DDA3937_RS03755 0.74 -1.3 832,806 + DDA3937_RS03755 0.74 -0.6 832,807 - DDA3937_RS03755 0.74 +0.3 833,007 + -0.9 833,008 - -0.4 833,078 + -0.1 833,078 + -1.3 833,078 + -0.8 833,173 + +0.3 833,210 + +0.1 833,210 + -0.9 833,210 + +1.2 833,210 + -0.7 833,211 - -0.5 833,211 - +0.2 833,241 + -0.1 833,241 + -0.3 833,242 - -0.1 833,251 + -0.0 833,316 + DDA3937_RS03760 0.15 -0.2 833,316 + DDA3937_RS03760 0.15 -1.8 833,317 - DDA3937_RS03760 0.15 -0.2 833,395 + DDA3937_RS03760 0.22 +0.5 833,395 + DDA3937_RS03760 0.22 -0.5 833,395 + DDA3937_RS03760 0.22 -1.3 833,396 - DDA3937_RS03760 0.22 -0.5 833,487 + DDA3937_RS03760 0.30 +0.3 833,488 - DDA3937_RS03760 0.30 +0.9 833,488 - DDA3937_RS03760 0.30 +0.3 833,488 - DDA3937_RS03760 0.30 +0.3 833,557 + DDA3937_RS03760 0.36 +1.3 833,558 - DDA3937_RS03760 0.36 -1.0 833,643 - DDA3937_RS03760 0.44 -0.3 833,643 - DDA3937_RS03760 0.44 -0.4 833,670 + DDA3937_RS03760 0.46 -0.1 833,671 - DDA3937_RS03760 0.46 -0.9 833,671 - DDA3937_RS03760 0.46 -1.0 833,671 - DDA3937_RS03760 0.46 +1.0 833,672 + DDA3937_RS03760 0.47 +0.3 833,672 + DDA3937_RS03760 0.47 -0.7 833,673 - DDA3937_RS03760 0.47 -0.2 833,673 - DDA3937_RS03760 0.47 +1.1 833,673 - +2.1 833,705 + DDA3937_RS03760 0.50 -0.0 833,747 + DDA3937_RS03760 0.53 -0.8 833,747 + DDA3937_RS03760 0.53 +0.2 833,775 + DDA3937_RS03760 0.56 +0.8 833,776 - DDA3937_RS03760 0.56 +1.1 833,776 - DDA3937_RS03760 0.56 +0.3 833,836 + DDA3937_RS03760 0.61 -0.3 833,837 - DDA3937_RS03760 0.61 -0.7 833,837 - DDA3937_RS03760 0.61 +1.3 833,936 + DDA3937_RS03760 0.70 +1.8 834,047 + DDA3937_RS03760 0.80 -0.4 834,047 + DDA3937_RS03760 0.80 +0.2 834,048 - DDA3937_RS03760 0.80 +0.3
Or see this region's nucleotide sequence