Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03645 and DDA3937_RS03650 are separated by 43 nucleotides DDA3937_RS03650 and DDA3937_RS03655 are separated by 106 nucleotides
DDA3937_RS03645: DDA3937_RS03645 - APC family permease, at 804,327 to 805,748
_RS03645
DDA3937_RS03650: DDA3937_RS03650 - MFS transporter, at 805,792 to 806,967
_RS03650
DDA3937_RS03655: DDA3937_RS03655 - LysR family transcriptional regulator, at 807,074 to 807,961
_RS03655
Position (kb) 805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2 at 804.890 kb on + strand, within DDA3937_RS03645 at 804.978 kb on + strand, within DDA3937_RS03645 at 804.979 kb on - strand, within DDA3937_RS03645 at 805.013 kb on - strand, within DDA3937_RS03645 at 805.089 kb on + strand, within DDA3937_RS03645 at 805.090 kb on - strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.330 kb on - strand, within DDA3937_RS03645 at 805.330 kb on - strand, within DDA3937_RS03645 at 805.369 kb on + strand, within DDA3937_RS03645 at 805.372 kb on + strand, within DDA3937_RS03645 at 805.372 kb on + strand, within DDA3937_RS03645 at 805.472 kb on - strand, within DDA3937_RS03645 at 805.641 kb on - strand at 805.641 kb on - strand at 805.731 kb on - strand at 805.731 kb on - strand at 805.731 kb on - strand at 805.780 kb on + strand at 805.802 kb on - strand at 805.850 kb on - strand at 805.953 kb on + strand, within DDA3937_RS03650 at 806.003 kb on + strand, within DDA3937_RS03650 at 806.004 kb on - strand, within DDA3937_RS03650 at 806.004 kb on - strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.045 kb on - strand, within DDA3937_RS03650 at 806.096 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.343 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand at 806.453 kb on - strand, within DDA3937_RS03650 at 806.684 kb on - strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.697 kb on - strand, within DDA3937_RS03650 at 806.828 kb on + strand, within DDA3937_RS03650 at 806.829 kb on - strand, within DDA3937_RS03650 at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.968 kb on - strand at 806.968 kb on - strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.979 kb on + strand at 806.979 kb on + strand at 806.980 kb on - strand at 807.269 kb on + strand at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.292 kb on - strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.553 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.798 kb on - strand, within DDA3937_RS03655 at 807.887 kb on + strand at 807.890 kb on + strand at 807.891 kb on - strand at 807.891 kb on - strand at 807.959 kb on + strand at 807.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 804,890 + DDA3937_RS03645 0.40 -1.9 804,978 + DDA3937_RS03645 0.46 -0.3 804,979 - DDA3937_RS03645 0.46 -0.9 805,013 - DDA3937_RS03645 0.48 +0.5 805,089 + DDA3937_RS03645 0.54 +0.5 805,090 - DDA3937_RS03645 0.54 +0.3 805,329 + DDA3937_RS03645 0.70 +0.9 805,329 + DDA3937_RS03645 0.70 +0.5 805,329 + DDA3937_RS03645 0.70 +0.8 805,329 + DDA3937_RS03645 0.70 +0.8 805,329 + DDA3937_RS03645 0.70 -1.1 805,330 - DDA3937_RS03645 0.71 -0.4 805,330 - DDA3937_RS03645 0.71 -2.1 805,369 + DDA3937_RS03645 0.73 -0.0 805,372 + DDA3937_RS03645 0.73 -0.6 805,372 + DDA3937_RS03645 0.73 -0.5 805,472 - DDA3937_RS03645 0.81 +0.7 805,641 - +0.7 805,641 - -0.4 805,731 - -0.3 805,731 - +0.2 805,731 - +0.3 805,780 + -0.9 805,802 - -0.7 805,850 - -0.7 805,953 + DDA3937_RS03650 0.14 +1.1 806,003 + DDA3937_RS03650 0.18 -0.4 806,004 - DDA3937_RS03650 0.18 +0.5 806,004 - DDA3937_RS03650 0.18 +1.5 806,027 + DDA3937_RS03650 0.20 -1.5 806,027 + DDA3937_RS03650 0.20 +1.1 806,027 + DDA3937_RS03650 0.20 -1.1 806,027 + DDA3937_RS03650 0.20 +0.1 806,027 + DDA3937_RS03650 0.20 +1.7 806,028 - DDA3937_RS03650 0.20 +2.5 806,028 - DDA3937_RS03650 0.20 +1.0 806,028 - DDA3937_RS03650 0.20 +0.9 806,045 - DDA3937_RS03650 0.22 -0.4 806,096 + DDA3937_RS03650 0.26 +0.5 806,154 + DDA3937_RS03650 0.31 -0.9 806,154 + DDA3937_RS03650 0.31 +0.9 806,343 + DDA3937_RS03650 0.47 -0.7 806,351 + DDA3937_RS03650 0.48 -1.5 806,351 + DDA3937_RS03650 0.48 +0.3 806,351 + +0.1 806,453 - DDA3937_RS03650 0.56 +0.4 806,684 - DDA3937_RS03650 0.76 -1.5 806,696 + DDA3937_RS03650 0.77 +0.0 806,696 + DDA3937_RS03650 0.77 -0.6 806,696 + DDA3937_RS03650 0.77 -1.3 806,697 - DDA3937_RS03650 0.77 +0.7 806,828 + DDA3937_RS03650 0.88 +0.3 806,829 - DDA3937_RS03650 0.88 +0.1 806,967 + -0.2 806,967 + +0.4 806,967 + -0.5 806,967 + -0.3 806,967 + +0.8 806,968 - -0.2 806,968 - -1.2 806,971 + +0.4 806,971 + +0.5 806,971 + +0.5 806,971 + +0.0 806,971 + +0.8 806,971 + +0.2 806,971 + +1.8 806,972 - -0.3 806,972 - -0.6 806,972 - -0.7 806,972 - +0.2 806,972 - -0.7 806,979 + +0.8 806,979 + +0.5 806,980 - -1.1 807,269 + -0.3 807,291 + DDA3937_RS03655 0.24 -0.3 807,291 + DDA3937_RS03655 0.24 -0.3 807,291 + DDA3937_RS03655 0.24 -0.9 807,291 + DDA3937_RS03655 0.24 +0.7 807,292 - DDA3937_RS03655 0.25 -1.4 807,294 + DDA3937_RS03655 0.25 -1.7 807,294 + DDA3937_RS03655 0.25 +0.9 807,294 + DDA3937_RS03655 0.25 -0.6 807,294 + DDA3937_RS03655 0.25 -1.1 807,294 + DDA3937_RS03655 0.25 +0.6 807,294 + DDA3937_RS03655 0.25 -0.1 807,294 + DDA3937_RS03655 0.25 -0.9 807,294 + DDA3937_RS03655 0.25 -1.3 807,295 - DDA3937_RS03655 0.25 +0.9 807,295 - DDA3937_RS03655 0.25 -0.4 807,295 - DDA3937_RS03655 0.25 +0.1 807,553 + DDA3937_RS03655 0.54 -1.0 807,560 + DDA3937_RS03655 0.55 -0.1 807,560 + DDA3937_RS03655 0.55 +0.2 807,587 + DDA3937_RS03655 0.58 +0.8 807,587 + DDA3937_RS03655 0.58 -0.4 807,587 + DDA3937_RS03655 0.58 -0.0 807,587 + DDA3937_RS03655 0.58 -0.1 807,588 - DDA3937_RS03655 0.58 -0.2 807,588 - DDA3937_RS03655 0.58 +0.2 807,588 - DDA3937_RS03655 0.58 +0.0 807,588 - DDA3937_RS03655 0.58 +0.1 807,588 - DDA3937_RS03655 0.58 +0.6 807,707 + DDA3937_RS03655 0.71 -0.1 807,707 + DDA3937_RS03655 0.71 -0.4 807,797 + DDA3937_RS03655 0.81 +0.5 807,797 + DDA3937_RS03655 0.81 +0.1 807,797 + DDA3937_RS03655 0.81 -1.4 807,798 - DDA3937_RS03655 0.82 +1.8 807,887 + +0.5 807,890 + -0.8 807,891 - -0.5 807,891 - -0.0 807,959 + -0.4 807,960 - +1.9
Or see this region's nucleotide sequence