Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03585 and DDA3937_RS03590 are separated by 24 nucleotides DDA3937_RS03590 and DDA3937_RS03595 are separated by 96 nucleotides DDA3937_RS03595 and DDA3937_RS03600 are separated by 129 nucleotides
DDA3937_RS03585: DDA3937_RS03585 - GNAT family N-acetyltransferase, at 792,313 to 792,858
_RS03585
DDA3937_RS03590: DDA3937_RS03590 - LysE family transporter, at 792,883 to 793,506
_RS03590
DDA3937_RS03595: DDA3937_RS03595 - YnfC family lipoprotein, at 793,603 to 794,328
_RS03595
DDA3937_RS03600: DDA3937_RS03600 - glycosyl hydrolase 43 family protein, at 794,458 to 796,026
_RS03600
Position (kb) 793
794
795 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.676 kb on - strand at 792.688 kb on - strand, within DDA3937_RS03585 at 792.701 kb on - strand, within DDA3937_RS03585 at 792.823 kb on + strand at 792.823 kb on + strand at 792.823 kb on + strand at 792.824 kb on - strand at 792.824 kb on - strand at 792.840 kb on + strand at 792.840 kb on + strand at 792.841 kb on - strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.857 kb on - strand at 792.857 kb on - strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.965 kb on + strand, within DDA3937_RS03590 at 792.965 kb on + strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.099 kb on + strand, within DDA3937_RS03590 at 793.100 kb on - strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.256 kb on + strand, within DDA3937_RS03590 at 793.256 kb on + strand, within DDA3937_RS03590 at 793.257 kb on - strand, within DDA3937_RS03590 at 793.257 kb on - strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.387 kb on - strand, within DDA3937_RS03590 at 793.414 kb on - strand, within DDA3937_RS03590 at 793.486 kb on - strand at 793.492 kb on + strand at 793.492 kb on + strand at 793.493 kb on - strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.536 kb on - strand at 793.541 kb on + strand at 793.603 kb on - strand at 793.603 kb on - strand at 793.603 kb on - strand at 793.611 kb on - strand at 793.637 kb on + strand at 793.637 kb on + strand at 793.637 kb on + strand at 793.640 kb on + strand at 793.640 kb on + strand at 793.641 kb on - strand at 793.750 kb on - strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.841 kb on - strand, within DDA3937_RS03595 at 793.841 kb on - strand, within DDA3937_RS03595 at 793.879 kb on - strand, within DDA3937_RS03595 at 793.975 kb on + strand, within DDA3937_RS03595 at 793.993 kb on + strand, within DDA3937_RS03595 at 793.993 kb on + strand, within DDA3937_RS03595 at 793.993 kb on + strand, within DDA3937_RS03595 at 793.993 kb on + strand, within DDA3937_RS03595 at 793.994 kb on - strand, within DDA3937_RS03595 at 794.014 kb on + strand, within DDA3937_RS03595 at 794.045 kb on - strand, within DDA3937_RS03595 at 794.128 kb on - strand, within DDA3937_RS03595 at 794.219 kb on - strand, within DDA3937_RS03595 at 794.255 kb on + strand, within DDA3937_RS03595 at 794.255 kb on + strand, within DDA3937_RS03595 at 794.255 kb on + strand, within DDA3937_RS03595 at 794.304 kb on + strand at 794.304 kb on + strand at 794.304 kb on + strand at 794.304 kb on + strand at 794.305 kb on - strand at 794.305 kb on - strand at 794.305 kb on - strand at 794.320 kb on + strand at 794.321 kb on - strand at 794.323 kb on + strand at 794.324 kb on - strand at 794.324 kb on - strand at 794.324 kb on - strand at 794.324 kb on - strand at 794.327 kb on - strand at 794.358 kb on + strand at 794.358 kb on + strand at 794.359 kb on - strand at 794.363 kb on - strand at 794.528 kb on + strand at 794.528 kb on + strand at 794.528 kb on + strand at 794.705 kb on + strand, within DDA3937_RS03600 at 794.705 kb on + strand, within DDA3937_RS03600 at 794.706 kb on - strand, within DDA3937_RS03600 at 794.706 kb on - strand, within DDA3937_RS03600 at 794.807 kb on + strand, within DDA3937_RS03600 at 794.816 kb on - strand, within DDA3937_RS03600 at 794.918 kb on + strand, within DDA3937_RS03600 at 794.918 kb on + strand, within DDA3937_RS03600 at 794.919 kb on - strand, within DDA3937_RS03600 at 794.919 kb on - strand, within DDA3937_RS03600 at 794.919 kb on - strand, within DDA3937_RS03600 at 794.919 kb on - strand, within DDA3937_RS03600 at 794.919 kb on - strand, within DDA3937_RS03600 at 794.991 kb on - strand, within DDA3937_RS03600 at 795.029 kb on - strand, within DDA3937_RS03600 at 795.029 kb on - strand, within DDA3937_RS03600 at 795.029 kb on - strand, within DDA3937_RS03600 at 795.200 kb on - strand, within DDA3937_RS03600
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 792,676 - +0.5 792,688 - DDA3937_RS03585 0.69 +0.1 792,701 - DDA3937_RS03585 0.71 -1.6 792,823 + -0.1 792,823 + +1.3 792,823 + -1.1 792,824 - +2.1 792,824 - -0.5 792,840 + +1.1 792,840 + +0.8 792,841 - -2.3 792,854 + -1.1 792,854 + -1.9 792,854 + +0.5 792,854 + -1.5 792,854 + -0.4 792,854 + +0.8 792,854 + +0.5 792,855 - -0.5 792,855 - +0.9 792,855 - -0.4 792,855 - +0.1 792,855 - +0.8 792,856 + -1.0 792,856 + +0.3 792,856 + +1.1 792,857 - -0.4 792,857 - -0.5 792,884 + -0.0 792,884 + -1.0 792,884 + -0.1 792,965 + DDA3937_RS03590 0.13 +0.2 792,965 + DDA3937_RS03590 0.13 -0.5 792,966 - DDA3937_RS03590 0.13 +0.7 792,966 - DDA3937_RS03590 0.13 -0.0 793,058 + DDA3937_RS03590 0.28 +0.7 793,058 + DDA3937_RS03590 0.28 +0.1 793,058 + DDA3937_RS03590 0.28 -0.1 793,059 - DDA3937_RS03590 0.28 +0.3 793,059 - DDA3937_RS03590 0.28 +0.5 793,099 + DDA3937_RS03590 0.35 -0.4 793,100 - DDA3937_RS03590 0.35 +0.1 793,247 + DDA3937_RS03590 0.58 +0.5 793,247 + DDA3937_RS03590 0.58 +0.2 793,247 + DDA3937_RS03590 0.58 -0.4 793,247 + DDA3937_RS03590 0.58 -0.0 793,247 + DDA3937_RS03590 0.58 -0.3 793,248 - DDA3937_RS03590 0.58 +0.5 793,248 - DDA3937_RS03590 0.58 +0.5 793,248 - DDA3937_RS03590 0.58 -0.4 793,248 - DDA3937_RS03590 0.58 -0.9 793,249 + DDA3937_RS03590 0.59 -0.2 793,249 + DDA3937_RS03590 0.59 -1.3 793,249 + DDA3937_RS03590 0.59 +0.4 793,250 - DDA3937_RS03590 0.59 -1.7 793,250 - DDA3937_RS03590 0.59 -0.1 793,250 - DDA3937_RS03590 0.59 -0.4 793,250 - DDA3937_RS03590 0.59 +0.0 793,256 + DDA3937_RS03590 0.60 -0.2 793,256 + DDA3937_RS03590 0.60 -0.9 793,257 - DDA3937_RS03590 0.60 +1.7 793,257 - DDA3937_RS03590 0.60 -0.4 793,386 + DDA3937_RS03590 0.81 +0.9 793,386 + DDA3937_RS03590 0.81 -0.7 793,386 + DDA3937_RS03590 0.81 +0.6 793,386 + DDA3937_RS03590 0.81 -0.1 793,386 + DDA3937_RS03590 0.81 +0.5 793,387 - DDA3937_RS03590 0.81 -0.8 793,414 - DDA3937_RS03590 0.85 -0.3 793,486 - -0.2 793,492 + -0.5 793,492 + -0.1 793,493 - -1.5 793,535 + +0.2 793,535 + +0.5 793,535 + +0.5 793,535 + -0.0 793,535 + -0.2 793,535 + -0.2 793,536 - +0.1 793,541 + +0.5 793,603 - +0.1 793,603 - +0.0 793,603 - +0.3 793,611 - -0.5 793,637 + +0.5 793,637 + +1.6 793,637 + +0.0 793,640 + -0.3 793,640 + -0.1 793,641 - -0.6 793,750 - DDA3937_RS03595 0.20 +0.5 793,789 + DDA3937_RS03595 0.26 -0.1 793,789 + DDA3937_RS03595 0.26 +1.5 793,789 + DDA3937_RS03595 0.26 -0.5 793,790 - DDA3937_RS03595 0.26 +0.2 793,790 - DDA3937_RS03595 0.26 -0.1 793,790 - DDA3937_RS03595 0.26 -0.3 793,840 + DDA3937_RS03595 0.33 -0.7 793,840 + DDA3937_RS03595 0.33 +0.3 793,840 + DDA3937_RS03595 0.33 +0.3 793,840 + DDA3937_RS03595 0.33 -0.1 793,841 - DDA3937_RS03595 0.33 +1.1 793,841 - DDA3937_RS03595 0.33 -1.1 793,879 - DDA3937_RS03595 0.38 -0.9 793,975 + DDA3937_RS03595 0.51 +0.5 793,993 + DDA3937_RS03595 0.54 +0.7 793,993 + DDA3937_RS03595 0.54 +0.2 793,993 + DDA3937_RS03595 0.54 +1.1 793,993 + DDA3937_RS03595 0.54 -0.8 793,994 - DDA3937_RS03595 0.54 -0.1 794,014 + DDA3937_RS03595 0.57 +0.8 794,045 - DDA3937_RS03595 0.61 +0.7 794,128 - DDA3937_RS03595 0.72 +0.1 794,219 - DDA3937_RS03595 0.85 -0.4 794,255 + DDA3937_RS03595 0.90 -0.2 794,255 + DDA3937_RS03595 0.90 +0.5 794,255 + DDA3937_RS03595 0.90 -0.7 794,304 + -0.4 794,304 + -0.2 794,304 + +1.4 794,304 + +0.1 794,305 - +0.9 794,305 - +0.2 794,305 - +0.5 794,320 + +0.1 794,321 - -0.1 794,323 + -0.5 794,324 - -0.5 794,324 - -0.9 794,324 - -1.8 794,324 - +0.2 794,327 - -0.3 794,358 + +0.2 794,358 + -1.2 794,359 - -0.6 794,363 - -0.1 794,528 + +0.1 794,528 + +0.6 794,528 + -0.1 794,705 + DDA3937_RS03600 0.16 -0.2 794,705 + DDA3937_RS03600 0.16 +0.4 794,706 - DDA3937_RS03600 0.16 -0.8 794,706 - DDA3937_RS03600 0.16 -1.5 794,807 + DDA3937_RS03600 0.22 +0.2 794,816 - DDA3937_RS03600 0.23 +1.1 794,918 + DDA3937_RS03600 0.29 -1.8 794,918 + DDA3937_RS03600 0.29 -0.4 794,919 - DDA3937_RS03600 0.29 -0.7 794,919 - DDA3937_RS03600 0.29 -0.1 794,919 - DDA3937_RS03600 0.29 -2.1 794,919 - DDA3937_RS03600 0.29 -1.6 794,919 - DDA3937_RS03600 0.29 +0.4 794,991 - DDA3937_RS03600 0.34 +0.8 795,029 - DDA3937_RS03600 0.36 -0.1 795,029 - DDA3937_RS03600 0.36 -1.2 795,029 - DDA3937_RS03600 0.36 +0.3 795,200 - DDA3937_RS03600 0.47 -0.1
Or see this region's nucleotide sequence