Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03390 and DDA3937_RS03395 are separated by 74 nucleotides DDA3937_RS03395 and DDA3937_RS03400 are separated by 44 nucleotides DDA3937_RS03400 and DDA3937_RS03405 are separated by 660 nucleotides
DDA3937_RS03390: DDA3937_RS03390 - heavy metal sensor histidine kinase, at 741,506 to 742,930
_RS03390
DDA3937_RS03395: DDA3937_RS03395 - methyltransferase, at 743,005 to 743,583
_RS03395
DDA3937_RS03400: DDA3937_RS03400 - hypothetical protein, at 743,628 to 743,852
_RS03400
DDA3937_RS03405: DDA3937_RS03405 - helix-turn-helix transcriptional regulator, at 744,513 to 744,890
_RS03405
Position (kb) 743
744 Strain fitness (log2 ratio) -2
-1
0
1
2 at 742.749 kb on - strand, within DDA3937_RS03390 at 742.791 kb on + strand at 742.876 kb on + strand at 742.877 kb on - strand at 742.928 kb on + strand at 742.934 kb on - strand at 742.967 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 743.004 kb on + strand at 743.005 kb on - strand at 743.025 kb on + strand at 743.065 kb on + strand, within DDA3937_RS03395 at 743.066 kb on - strand at 743.079 kb on + strand, within DDA3937_RS03395 at 743.100 kb on - strand, within DDA3937_RS03395 at 743.110 kb on - strand, within DDA3937_RS03395 at 743.166 kb on + strand, within DDA3937_RS03395 at 743.166 kb on + strand, within DDA3937_RS03395 at 743.218 kb on - strand, within DDA3937_RS03395 at 743.257 kb on + strand, within DDA3937_RS03395 at 743.257 kb on + strand, within DDA3937_RS03395 at 743.265 kb on + strand, within DDA3937_RS03395 at 743.266 kb on - strand, within DDA3937_RS03395 at 743.346 kb on + strand, within DDA3937_RS03395 at 743.404 kb on - strand, within DDA3937_RS03395 at 743.451 kb on + strand, within DDA3937_RS03395 at 743.470 kb on + strand, within DDA3937_RS03395 at 743.471 kb on - strand, within DDA3937_RS03395 at 743.471 kb on - strand, within DDA3937_RS03395 at 743.471 kb on - strand at 743.471 kb on - strand, within DDA3937_RS03395 at 743.472 kb on + strand, within DDA3937_RS03395 at 743.473 kb on - strand, within DDA3937_RS03395 at 743.473 kb on - strand, within DDA3937_RS03395 at 743.473 kb on - strand, within DDA3937_RS03395 at 743.492 kb on + strand, within DDA3937_RS03395 at 743.492 kb on + strand, within DDA3937_RS03395 at 743.524 kb on - strand at 743.557 kb on + strand at 743.597 kb on + strand at 743.598 kb on - strand at 743.613 kb on - strand at 743.635 kb on + strand at 743.636 kb on - strand at 743.636 kb on - strand at 743.639 kb on + strand at 743.640 kb on - strand at 743.644 kb on + strand at 743.646 kb on + strand at 743.646 kb on + strand at 743.646 kb on + strand at 743.647 kb on - strand at 743.647 kb on - strand at 743.723 kb on + strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.868 kb on + strand at 743.949 kb on - strand at 743.972 kb on - strand at 743.974 kb on + strand at 743.975 kb on - strand at 743.975 kb on - strand at 744.050 kb on + strand at 744.051 kb on - strand at 744.051 kb on - strand at 744.203 kb on + strand at 744.293 kb on + strand at 744.294 kb on - strand at 744.308 kb on + strand at 744.309 kb on - strand at 744.318 kb on + strand at 744.318 kb on + strand at 744.319 kb on - strand at 744.319 kb on - strand at 744.319 kb on - strand at 744.369 kb on + strand at 744.370 kb on - strand at 744.370 kb on - strand at 744.400 kb on + strand at 744.400 kb on + strand at 744.400 kb on + strand at 744.401 kb on - strand at 744.424 kb on - strand at 744.450 kb on + strand at 744.489 kb on - strand at 744.531 kb on + strand at 744.531 kb on + strand at 744.531 kb on + strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.555 kb on - strand, within DDA3937_RS03405 at 744.555 kb on - strand, within DDA3937_RS03405 at 744.555 kb on - strand, within DDA3937_RS03405 at 744.578 kb on + strand, within DDA3937_RS03405 at 744.629 kb on + strand, within DDA3937_RS03405 at 744.732 kb on - strand, within DDA3937_RS03405 at 744.753 kb on + strand, within DDA3937_RS03405 at 744.754 kb on - strand, within DDA3937_RS03405 at 744.754 kb on - strand, within DDA3937_RS03405 at 744.762 kb on - strand, within DDA3937_RS03405 at 744.794 kb on - strand, within DDA3937_RS03405 at 744.794 kb on - strand, within DDA3937_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 742,749 - DDA3937_RS03390 0.87 -0.9 742,791 + -1.1 742,876 + +0.4 742,877 - -0.9 742,928 + +0.3 742,934 - -1.3 742,967 - +1.0 742,970 - -0.7 742,970 - +0.7 742,970 - -1.2 742,970 - +0.5 742,970 - -0.6 743,004 + -1.5 743,005 - +0.2 743,025 + +0.8 743,065 + DDA3937_RS03395 0.10 +0.4 743,066 - -0.1 743,079 + DDA3937_RS03395 0.13 +0.4 743,100 - DDA3937_RS03395 0.16 -0.1 743,110 - DDA3937_RS03395 0.18 +0.9 743,166 + DDA3937_RS03395 0.28 +0.9 743,166 + DDA3937_RS03395 0.28 -0.1 743,218 - DDA3937_RS03395 0.37 +0.2 743,257 + DDA3937_RS03395 0.44 +0.4 743,257 + DDA3937_RS03395 0.44 -0.1 743,265 + DDA3937_RS03395 0.45 +0.5 743,266 - DDA3937_RS03395 0.45 -0.7 743,346 + DDA3937_RS03395 0.59 -0.2 743,404 - DDA3937_RS03395 0.69 -0.3 743,451 + DDA3937_RS03395 0.77 +0.4 743,470 + DDA3937_RS03395 0.80 -0.9 743,471 - DDA3937_RS03395 0.80 -0.5 743,471 - DDA3937_RS03395 0.80 -0.4 743,471 - +0.5 743,471 - DDA3937_RS03395 0.80 +0.5 743,472 + DDA3937_RS03395 0.81 +1.8 743,473 - DDA3937_RS03395 0.81 +1.3 743,473 - DDA3937_RS03395 0.81 +0.2 743,473 - DDA3937_RS03395 0.81 +0.3 743,492 + DDA3937_RS03395 0.84 -1.8 743,492 + DDA3937_RS03395 0.84 -0.5 743,524 - +0.5 743,557 + +0.2 743,597 + +0.0 743,598 - -0.1 743,613 - -0.5 743,635 + -1.3 743,636 - +0.9 743,636 - +0.2 743,639 + -0.4 743,640 - +0.3 743,644 + -0.1 743,646 + +0.3 743,646 + +1.2 743,646 + +1.5 743,647 - +0.1 743,647 - +0.2 743,723 + DDA3937_RS03400 0.42 +0.2 743,771 - DDA3937_RS03400 0.64 -0.2 743,771 - DDA3937_RS03400 0.64 +0.5 743,771 - DDA3937_RS03400 0.64 +0.7 743,868 + -0.1 743,949 - -0.4 743,972 - -0.2 743,974 + +0.1 743,975 - -0.7 743,975 - +0.1 744,050 + -0.4 744,051 - +1.2 744,051 - -0.1 744,203 + -2.1 744,293 + -1.8 744,294 - -2.0 744,308 + +0.3 744,309 - -0.5 744,318 + -1.1 744,318 + -0.1 744,319 - -0.1 744,319 - +0.7 744,319 - +0.4 744,369 + -0.7 744,370 - -0.4 744,370 - +0.3 744,400 + -0.5 744,400 + -0.2 744,400 + +0.5 744,401 - +0.1 744,424 - +0.3 744,450 + +1.3 744,489 - -0.5 744,531 + -0.1 744,531 + -0.2 744,531 + +0.0 744,532 - -0.3 744,532 - -0.8 744,532 - +1.0 744,532 - +0.2 744,532 - +0.5 744,555 - DDA3937_RS03405 0.11 -1.3 744,555 - DDA3937_RS03405 0.11 +0.2 744,555 - DDA3937_RS03405 0.11 -0.6 744,578 + DDA3937_RS03405 0.17 -1.2 744,629 + DDA3937_RS03405 0.31 -1.8 744,732 - DDA3937_RS03405 0.58 -1.6 744,753 + DDA3937_RS03405 0.63 -0.3 744,754 - DDA3937_RS03405 0.64 +0.6 744,754 - DDA3937_RS03405 0.64 -0.5 744,762 - DDA3937_RS03405 0.66 -1.1 744,794 - DDA3937_RS03405 0.74 +0.9 744,794 - DDA3937_RS03405 0.74 +0.2
Or see this region's nucleotide sequence