Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03345 and DDA3937_RS03350 are separated by 125 nucleotides DDA3937_RS03350 and DDA3937_RS03355 are separated by 85 nucleotides DDA3937_RS03355 and DDA3937_RS03365 are separated by 154 nucleotides
DDA3937_RS03345: DDA3937_RS03345 - helix-turn-helix transcriptional regulator, at 732,057 to 732,812
_RS03345
DDA3937_RS03350: DDA3937_RS03350 - LysE family transporter, at 732,938 to 733,609
_RS03350
DDA3937_RS03355: DDA3937_RS03355 - tRNA-Gly, at 733,695 to 733,768
_RS03355
DDA3937_RS03365: DDA3937_RS03365 - IS3 family transposase, at 733,923 to 735,022
_RS03365
Position (kb) 733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.702 kb on - strand, within DDA3937_RS03345 at 732.770 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.817 kb on - strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.890 kb on + strand at 732.923 kb on + strand at 732.924 kb on - strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.942 kb on + strand at 732.942 kb on + strand at 733.006 kb on + strand, within DDA3937_RS03350 at 733.016 kb on - strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.134 kb on - strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.144 kb on - strand, within DDA3937_RS03350 at 733.345 kb on - strand, within DDA3937_RS03350 at 733.458 kb on + strand, within DDA3937_RS03350 at 733.474 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.580 kb on + strand at 733.621 kb on - strand at 733.673 kb on + strand at 733.674 kb on - strand at 733.675 kb on + strand at 733.675 kb on + strand at 733.676 kb on - strand at 733.702 kb on + strand at 733.713 kb on + strand, within DDA3937_RS03355 at 733.714 kb on - strand at 733.714 kb on - strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.737 kb on - strand, within DDA3937_RS03355 at 733.798 kb on - strand at 733.828 kb on + strand at 733.828 kb on + strand at 733.829 kb on - strand at 733.829 kb on - strand at 733.829 kb on - strand at 733.832 kb on + strand at 733.832 kb on + strand at 733.832 kb on + strand at 733.833 kb on - strand at 733.833 kb on - strand at 733.833 kb on - strand at 733.873 kb on + strand at 733.884 kb on - strand at 734.037 kb on + strand, within DDA3937_RS03365 at 734.240 kb on - strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.343 kb on + strand, within DDA3937_RS03365 at 734.363 kb on + strand, within DDA3937_RS03365 at 734.392 kb on - strand, within DDA3937_RS03365 at 734.438 kb on + strand, within DDA3937_RS03365 at 734.439 kb on - strand, within DDA3937_RS03365 at 734.601 kb on + strand, within DDA3937_RS03365 at 734.602 kb on - strand, within DDA3937_RS03365 at 734.609 kb on - strand, within DDA3937_RS03365 at 734.676 kb on + strand, within DDA3937_RS03365 at 734.677 kb on - strand at 734.677 kb on - strand, within DDA3937_RS03365 at 734.719 kb on + strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.746 kb on + strand, within DDA3937_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 732,701 + DDA3937_RS03345 0.85 -0.4 732,701 + DDA3937_RS03345 0.85 -0.7 732,701 + DDA3937_RS03345 0.85 +0.5 732,702 - DDA3937_RS03345 0.85 -0.1 732,770 + -0.4 732,816 + +0.2 732,816 + +0.9 732,816 + +0.3 732,816 + -0.4 732,816 + -0.3 732,817 - +0.9 732,853 + -0.3 732,853 + -0.1 732,853 + -0.7 732,853 + +0.6 732,853 + +0.3 732,853 + +0.2 732,854 - +0.1 732,854 - +2.4 732,854 - +0.3 732,854 - -0.7 732,873 + +1.1 732,873 + +0.5 732,873 + +0.6 732,873 + +0.5 732,874 - +0.8 732,874 - -0.1 732,874 - +0.6 732,890 + +0.5 732,923 + -0.2 732,924 - -2.5 732,937 + +0.4 732,937 + +1.6 732,937 + -0.9 732,937 + -0.0 732,937 + -0.4 732,937 + -0.4 732,937 + -0.5 732,937 + -0.9 732,937 + -0.3 732,937 + +0.1 732,937 + -0.0 732,937 + +0.5 732,938 - -1.5 732,938 - -1.3 732,938 - +0.5 732,938 - -0.2 732,938 - -0.7 732,938 - -0.5 732,938 - -0.3 732,938 - -0.3 732,938 - -0.1 732,942 + -0.1 732,942 + +1.5 733,006 + DDA3937_RS03350 0.10 +0.9 733,016 - DDA3937_RS03350 0.12 +0.7 733,133 + DDA3937_RS03350 0.29 +0.5 733,133 + DDA3937_RS03350 0.29 +0.1 733,133 + DDA3937_RS03350 0.29 -1.0 733,133 + DDA3937_RS03350 0.29 +0.0 733,133 + DDA3937_RS03350 0.29 -0.5 733,133 + DDA3937_RS03350 0.29 -0.2 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 +0.2 733,133 + DDA3937_RS03350 0.29 +0.5 733,133 + DDA3937_RS03350 0.29 -0.6 733,133 + DDA3937_RS03350 0.29 -0.6 733,133 + DDA3937_RS03350 0.29 +0.5 733,133 + DDA3937_RS03350 0.29 +0.7 733,134 - DDA3937_RS03350 0.29 -1.5 733,135 + DDA3937_RS03350 0.29 +1.1 733,135 + DDA3937_RS03350 0.29 +0.5 733,135 + DDA3937_RS03350 0.29 +0.5 733,136 - DDA3937_RS03350 0.29 +0.1 733,136 - DDA3937_RS03350 0.29 -0.1 733,144 - DDA3937_RS03350 0.31 +0.3 733,345 - DDA3937_RS03350 0.61 -0.5 733,458 + DDA3937_RS03350 0.77 +0.3 733,474 - DDA3937_RS03350 0.80 -0.9 733,518 - DDA3937_RS03350 0.86 -0.0 733,518 - DDA3937_RS03350 0.86 +0.5 733,580 + -1.8 733,621 - +0.4 733,673 + +0.1 733,674 - +0.3 733,675 + +0.1 733,675 + +1.1 733,676 - -0.1 733,702 + -0.2 733,713 + DDA3937_RS03355 0.24 +1.0 733,714 - +0.5 733,714 - DDA3937_RS03355 0.26 -0.3 733,736 + DDA3937_RS03355 0.55 +0.7 733,736 + DDA3937_RS03355 0.55 -0.2 733,737 - DDA3937_RS03355 0.57 +1.7 733,798 - -0.8 733,828 + +0.4 733,828 + +0.2 733,829 - -0.1 733,829 - -0.2 733,829 - +0.4 733,832 + -0.4 733,832 + +0.6 733,832 + +0.1 733,833 - +1.0 733,833 - -1.5 733,833 - -2.3 733,873 + -0.5 733,884 - +1.5 734,037 + DDA3937_RS03365 0.10 -0.7 734,240 - DDA3937_RS03365 0.29 +0.2 734,288 + DDA3937_RS03365 0.33 -3.0 734,288 + DDA3937_RS03365 0.33 -0.7 734,289 - DDA3937_RS03365 0.33 +1.8 734,289 - DDA3937_RS03365 0.33 -0.5 734,343 + DDA3937_RS03365 0.38 +0.4 734,363 + DDA3937_RS03365 0.40 +1.3 734,392 - DDA3937_RS03365 0.43 +0.2 734,438 + DDA3937_RS03365 0.47 +1.3 734,439 - DDA3937_RS03365 0.47 -0.1 734,601 + DDA3937_RS03365 0.62 -0.3 734,602 - DDA3937_RS03365 0.62 -0.4 734,609 - DDA3937_RS03365 0.62 +0.1 734,676 + DDA3937_RS03365 0.68 -0.5 734,677 - +1.8 734,677 - DDA3937_RS03365 0.69 -1.1 734,719 + DDA3937_RS03365 0.72 +0.5 734,720 - DDA3937_RS03365 0.72 +0.5 734,720 - DDA3937_RS03365 0.72 +0.3 734,746 + DDA3937_RS03365 0.75 +0.1
Or see this region's nucleotide sequence