Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03340 and DDA3937_RS03345 are separated by 399 nucleotides DDA3937_RS03345 and DDA3937_RS03350 are separated by 125 nucleotides DDA3937_RS03350 and DDA3937_RS03355 are separated by 85 nucleotides
DDA3937_RS03340: DDA3937_RS03340 - phosphoesterase, at 730,230 to 731,657
_RS03340
DDA3937_RS03345: DDA3937_RS03345 - helix-turn-helix transcriptional regulator, at 732,057 to 732,812
_RS03345
DDA3937_RS03350: DDA3937_RS03350 - LysE family transporter, at 732,938 to 733,609
_RS03350
DDA3937_RS03355: DDA3937_RS03355 - tRNA-Gly, at 733,695 to 733,768
_RS03355
Position (kb) 732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.192 kb on - strand, within DDA3937_RS03340 at 731.235 kb on - strand, within DDA3937_RS03340 at 731.249 kb on + strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.315 kb on - strand, within DDA3937_RS03340 at 731.320 kb on + strand, within DDA3937_RS03340 at 731.321 kb on - strand, within DDA3937_RS03340 at 731.404 kb on + strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.435 kb on + strand, within DDA3937_RS03340 at 731.436 kb on - strand, within DDA3937_RS03340 at 731.440 kb on + strand, within DDA3937_RS03340 at 731.472 kb on + strand, within DDA3937_RS03340 at 731.473 kb on - strand, within DDA3937_RS03340 at 731.586 kb on - strand at 731.625 kb on - strand at 731.652 kb on - strand at 731.764 kb on + strand at 731.764 kb on + strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.797 kb on + strand at 731.797 kb on + strand at 731.798 kb on - strand at 731.798 kb on - strand at 731.845 kb on - strand at 731.853 kb on + strand at 732.022 kb on + strand at 732.066 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.072 kb on - strand at 732.072 kb on - strand at 732.225 kb on + strand, within DDA3937_RS03345 at 732.225 kb on + strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.227 kb on + strand, within DDA3937_RS03345 at 732.228 kb on - strand, within DDA3937_RS03345 at 732.288 kb on + strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.315 kb on + strand, within DDA3937_RS03345 at 732.516 kb on - strand, within DDA3937_RS03345 at 732.615 kb on - strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.630 kb on - strand, within DDA3937_RS03345 at 732.662 kb on + strand, within DDA3937_RS03345 at 732.662 kb on + strand, within DDA3937_RS03345 at 732.662 kb on + strand, within DDA3937_RS03345 at 732.678 kb on - strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.702 kb on - strand, within DDA3937_RS03345 at 732.770 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.817 kb on - strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.890 kb on + strand at 732.923 kb on + strand at 732.924 kb on - strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.942 kb on + strand at 732.942 kb on + strand at 733.006 kb on + strand, within DDA3937_RS03350 at 733.016 kb on - strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.134 kb on - strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.144 kb on - strand, within DDA3937_RS03350 at 733.345 kb on - strand, within DDA3937_RS03350 at 733.458 kb on + strand, within DDA3937_RS03350 at 733.474 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.580 kb on + strand at 733.621 kb on - strand at 733.673 kb on + strand at 733.674 kb on - strand at 733.675 kb on + strand at 733.675 kb on + strand at 733.676 kb on - strand at 733.702 kb on + strand at 733.713 kb on + strand, within DDA3937_RS03355 at 733.714 kb on - strand at 733.714 kb on - strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.737 kb on - strand, within DDA3937_RS03355 at 733.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 731,080 + DDA3937_RS03340 0.60 -0.1 731,080 + DDA3937_RS03340 0.60 -0.0 731,080 + DDA3937_RS03340 0.60 +1.2 731,081 - DDA3937_RS03340 0.60 +1.1 731,081 - DDA3937_RS03340 0.60 +1.0 731,081 - DDA3937_RS03340 0.60 -0.6 731,081 - DDA3937_RS03340 0.60 +0.0 731,192 - DDA3937_RS03340 0.67 +0.0 731,235 - DDA3937_RS03340 0.70 +0.3 731,249 + DDA3937_RS03340 0.71 -0.8 731,250 - DDA3937_RS03340 0.71 -2.0 731,250 - DDA3937_RS03340 0.71 -0.2 731,315 - DDA3937_RS03340 0.76 +0.4 731,320 + DDA3937_RS03340 0.76 +0.9 731,321 - DDA3937_RS03340 0.76 -0.6 731,404 + DDA3937_RS03340 0.82 +0.1 731,408 - DDA3937_RS03340 0.82 -1.5 731,408 - DDA3937_RS03340 0.82 +0.2 731,435 + DDA3937_RS03340 0.84 +1.6 731,436 - DDA3937_RS03340 0.84 -0.2 731,440 + DDA3937_RS03340 0.85 -1.5 731,472 + DDA3937_RS03340 0.87 -0.6 731,473 - DDA3937_RS03340 0.87 +0.1 731,586 - +0.6 731,625 - -0.4 731,652 - -0.5 731,764 + +0.4 731,764 + -0.1 731,765 - +0.2 731,765 - +0.0 731,765 - -0.8 731,797 + +0.3 731,797 + -0.8 731,798 - -1.0 731,798 - -2.1 731,845 - +0.1 731,853 + -0.8 732,022 + -0.0 732,066 + -0.2 732,071 + +0.1 732,071 + +1.3 732,071 + +1.2 732,072 - -1.5 732,072 - +0.4 732,225 + DDA3937_RS03345 0.22 -0.2 732,225 + DDA3937_RS03345 0.22 -0.6 732,226 - DDA3937_RS03345 0.22 +1.2 732,226 - DDA3937_RS03345 0.22 -0.4 732,226 - DDA3937_RS03345 0.22 +0.5 732,226 - DDA3937_RS03345 0.22 -0.7 732,227 + DDA3937_RS03345 0.22 +1.2 732,228 - DDA3937_RS03345 0.23 +0.0 732,288 + DDA3937_RS03345 0.31 +0.9 732,289 - DDA3937_RS03345 0.31 -0.2 732,289 - DDA3937_RS03345 0.31 +0.1 732,289 - DDA3937_RS03345 0.31 -0.5 732,289 - DDA3937_RS03345 0.31 +1.3 732,315 + DDA3937_RS03345 0.34 +0.1 732,516 - DDA3937_RS03345 0.61 -1.3 732,615 - DDA3937_RS03345 0.74 +0.4 732,629 + DDA3937_RS03345 0.76 +0.6 732,629 + DDA3937_RS03345 0.76 +1.5 732,629 + DDA3937_RS03345 0.76 +1.8 732,630 - DDA3937_RS03345 0.76 +0.6 732,662 + DDA3937_RS03345 0.80 -2.3 732,662 + DDA3937_RS03345 0.80 -0.8 732,662 + DDA3937_RS03345 0.80 +0.5 732,678 - DDA3937_RS03345 0.82 +0.5 732,701 + DDA3937_RS03345 0.85 -0.4 732,701 + DDA3937_RS03345 0.85 -0.7 732,701 + DDA3937_RS03345 0.85 +0.5 732,702 - DDA3937_RS03345 0.85 -0.1 732,770 + -0.4 732,816 + +0.2 732,816 + +0.9 732,816 + +0.3 732,816 + -0.4 732,816 + -0.3 732,817 - +0.9 732,853 + -0.3 732,853 + -0.1 732,853 + -0.7 732,853 + +0.6 732,853 + +0.3 732,853 + +0.2 732,854 - +0.1 732,854 - +2.4 732,854 - +0.3 732,854 - -0.7 732,873 + +1.1 732,873 + +0.5 732,873 + +0.6 732,873 + +0.5 732,874 - +0.8 732,874 - -0.1 732,874 - +0.6 732,890 + +0.5 732,923 + -0.2 732,924 - -2.5 732,937 + +0.4 732,937 + +1.6 732,937 + -0.9 732,937 + -0.0 732,937 + -0.4 732,937 + -0.4 732,937 + -0.5 732,937 + -0.9 732,937 + -0.3 732,937 + +0.1 732,937 + -0.0 732,937 + +0.5 732,938 - -1.5 732,938 - -1.3 732,938 - +0.5 732,938 - -0.2 732,938 - -0.7 732,938 - -0.5 732,938 - -0.3 732,938 - -0.3 732,938 - -0.1 732,942 + -0.1 732,942 + +1.5 733,006 + DDA3937_RS03350 0.10 +0.9 733,016 - DDA3937_RS03350 0.12 +0.7 733,133 + DDA3937_RS03350 0.29 +0.5 733,133 + DDA3937_RS03350 0.29 +0.1 733,133 + DDA3937_RS03350 0.29 -1.0 733,133 + DDA3937_RS03350 0.29 +0.0 733,133 + DDA3937_RS03350 0.29 -0.5 733,133 + DDA3937_RS03350 0.29 -0.2 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 +0.2 733,133 + DDA3937_RS03350 0.29 +0.5 733,133 + DDA3937_RS03350 0.29 -0.6 733,133 + DDA3937_RS03350 0.29 -0.6 733,133 + DDA3937_RS03350 0.29 +0.5 733,133 + DDA3937_RS03350 0.29 +0.7 733,134 - DDA3937_RS03350 0.29 -1.5 733,135 + DDA3937_RS03350 0.29 +1.1 733,135 + DDA3937_RS03350 0.29 +0.5 733,135 + DDA3937_RS03350 0.29 +0.5 733,136 - DDA3937_RS03350 0.29 +0.1 733,136 - DDA3937_RS03350 0.29 -0.1 733,144 - DDA3937_RS03350 0.31 +0.3 733,345 - DDA3937_RS03350 0.61 -0.5 733,458 + DDA3937_RS03350 0.77 +0.3 733,474 - DDA3937_RS03350 0.80 -0.9 733,518 - DDA3937_RS03350 0.86 -0.0 733,518 - DDA3937_RS03350 0.86 +0.5 733,580 + -1.8 733,621 - +0.4 733,673 + +0.1 733,674 - +0.3 733,675 + +0.1 733,675 + +1.1 733,676 - -0.1 733,702 + -0.2 733,713 + DDA3937_RS03355 0.24 +1.0 733,714 - +0.5 733,714 - DDA3937_RS03355 0.26 -0.3 733,736 + DDA3937_RS03355 0.55 +0.7 733,736 + DDA3937_RS03355 0.55 -0.2 733,737 - DDA3937_RS03355 0.57 +1.7 733,798 - -0.8
Or see this region's nucleotide sequence