Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03295 and DDA3937_RS03300 are separated by 262 nucleotides DDA3937_RS03300 and DDA3937_RS03305 are separated by 88 nucleotides DDA3937_RS03305 and DDA3937_RS03310 are separated by 40 nucleotides
DDA3937_RS03295: DDA3937_RS03295 - MHS family MFS transporter, at 718,996 to 720,321
_RS03295
DDA3937_RS03300: DDA3937_RS03300 - site-specific tyrosine recombinase XerD, at 720,584 to 721,483
_RS03300
DDA3937_RS03305: DDA3937_RS03305 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 721,572 to 722,288
_RS03305
DDA3937_RS03310: DDA3937_RS03310 - single-stranded-DNA-specific exonuclease RecJ, at 722,329 to 724,059
_RS03310
Position (kb) 720
721
722 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.678 kb on + strand, within DDA3937_RS03295 at 719.679 kb on - strand, within DDA3937_RS03295 at 719.679 kb on - strand, within DDA3937_RS03295 at 719.692 kb on - strand, within DDA3937_RS03295 at 719.692 kb on - strand, within DDA3937_RS03295 at 719.834 kb on + strand, within DDA3937_RS03295 at 719.834 kb on + strand, within DDA3937_RS03295 at 719.835 kb on - strand, within DDA3937_RS03295 at 719.954 kb on - strand, within DDA3937_RS03295 at 719.969 kb on + strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.992 kb on + strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 720.175 kb on + strand, within DDA3937_RS03295 at 720.175 kb on + strand, within DDA3937_RS03295 at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.297 kb on + strand at 720.321 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.365 kb on + strand at 720.451 kb on + strand at 720.451 kb on + strand at 720.527 kb on + strand at 720.541 kb on + strand at 720.542 kb on - strand at 720.839 kb on + strand, within DDA3937_RS03300 at 720.840 kb on - strand, within DDA3937_RS03300 at 720.840 kb on - strand, within DDA3937_RS03300 at 721.185 kb on + strand at 721.275 kb on - strand, within DDA3937_RS03300 at 721.534 kb on + strand at 721.558 kb on - strand at 721.565 kb on + strand at 721.566 kb on - strand at 721.566 kb on - strand at 721.566 kb on - strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.588 kb on + strand at 721.588 kb on + strand at 721.588 kb on + strand at 721.588 kb on + strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.661 kb on - strand, within DDA3937_RS03305 at 721.661 kb on - strand, within DDA3937_RS03305 at 721.661 kb on - strand, within DDA3937_RS03305 at 721.661 kb on - strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.748 kb on + strand, within DDA3937_RS03305 at 721.748 kb on + strand, within DDA3937_RS03305 at 721.749 kb on - strand at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.789 kb on - strand, within DDA3937_RS03305 at 721.789 kb on - strand, within DDA3937_RS03305 at 721.789 kb on - strand at 721.789 kb on - strand, within DDA3937_RS03305 at 721.789 kb on - strand, within DDA3937_RS03305 at 721.875 kb on + strand, within DDA3937_RS03305 at 721.875 kb on + strand, within DDA3937_RS03305 at 721.876 kb on - strand, within DDA3937_RS03305 at 721.877 kb on + strand, within DDA3937_RS03305 at 721.877 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand at 721.922 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand at 721.923 kb on - strand, within DDA3937_RS03305 at 721.923 kb on - strand, within DDA3937_RS03305 at 721.923 kb on - strand, within DDA3937_RS03305 at 721.965 kb on + strand, within DDA3937_RS03305 at 721.966 kb on - strand, within DDA3937_RS03305 at 721.966 kb on - strand, within DDA3937_RS03305 at 721.966 kb on - strand, within DDA3937_RS03305 at 721.992 kb on + strand, within DDA3937_RS03305 at 722.091 kb on - strand, within DDA3937_RS03305 at 722.123 kb on + strand, within DDA3937_RS03305 at 722.123 kb on + strand, within DDA3937_RS03305 at 722.124 kb on - strand, within DDA3937_RS03305 at 722.124 kb on - strand, within DDA3937_RS03305 at 722.124 kb on - strand, within DDA3937_RS03305 at 722.303 kb on + strand at 722.412 kb on - strand at 722.412 kb on - strand at 722.413 kb on + strand at 722.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 719,678 + DDA3937_RS03295 0.51 +0.2 719,679 - DDA3937_RS03295 0.52 -0.7 719,679 - DDA3937_RS03295 0.52 -0.1 719,692 - DDA3937_RS03295 0.52 +0.3 719,692 - DDA3937_RS03295 0.52 +0.5 719,834 + DDA3937_RS03295 0.63 +0.9 719,834 + DDA3937_RS03295 0.63 +0.7 719,835 - DDA3937_RS03295 0.63 +0.2 719,954 - DDA3937_RS03295 0.72 +1.5 719,969 + DDA3937_RS03295 0.73 +0.7 719,970 - DDA3937_RS03295 0.73 -0.3 719,970 - DDA3937_RS03295 0.73 +0.2 719,970 - DDA3937_RS03295 0.73 +1.1 719,992 + DDA3937_RS03295 0.75 +1.0 719,993 - DDA3937_RS03295 0.75 -1.0 719,993 - DDA3937_RS03295 0.75 -0.0 719,993 - DDA3937_RS03295 0.75 -0.6 720,175 + DDA3937_RS03295 0.89 -0.3 720,175 + DDA3937_RS03295 0.89 -0.1 720,197 + +0.4 720,197 + +0.9 720,197 + -0.6 720,197 + -0.4 720,197 + +0.3 720,197 + +1.9 720,197 + +1.7 720,197 + -0.2 720,198 - -0.1 720,198 - -0.9 720,198 - -0.1 720,198 - -0.5 720,198 - -0.3 720,198 - -0.1 720,198 - -1.8 720,198 - +1.1 720,198 - +0.5 720,198 - -0.6 720,297 + -0.8 720,321 + +0.5 720,359 + -0.5 720,359 + +1.0 720,359 + +0.1 720,359 + -0.5 720,359 + +0.7 720,359 + -1.8 720,359 + -0.5 720,359 + -0.8 720,360 - -0.7 720,360 - -1.0 720,360 - +0.5 720,360 - +0.0 720,360 - -0.5 720,360 - -0.5 720,365 + -0.4 720,451 + +0.2 720,451 + +0.8 720,527 + -0.8 720,541 + +1.7 720,542 - -0.2 720,839 + DDA3937_RS03300 0.28 -0.1 720,840 - DDA3937_RS03300 0.28 -2.1 720,840 - DDA3937_RS03300 0.28 -2.1 721,185 + +2.1 721,275 - DDA3937_RS03300 0.77 -2.2 721,534 + -0.7 721,558 - -0.5 721,565 + -0.0 721,566 - -0.1 721,566 - -0.3 721,566 - -0.3 721,585 + -1.8 721,585 + -0.3 721,585 + +0.5 721,585 + -1.1 721,585 + -0.3 721,588 + -0.0 721,588 + -0.5 721,588 + +1.2 721,588 + -0.1 721,589 - +0.4 721,589 - +0.5 721,589 - -1.4 721,589 - +0.1 721,589 - -2.1 721,589 - -0.1 721,589 - -0.7 721,661 - DDA3937_RS03305 0.12 +0.5 721,661 - DDA3937_RS03305 0.12 +0.1 721,661 - DDA3937_RS03305 0.12 -1.1 721,661 - DDA3937_RS03305 0.12 -0.5 721,746 + DDA3937_RS03305 0.24 +0.7 721,746 + DDA3937_RS03305 0.24 -0.3 721,746 + DDA3937_RS03305 0.24 -0.3 721,746 + DDA3937_RS03305 0.24 -1.1 721,746 + DDA3937_RS03305 0.24 +1.3 721,746 + DDA3937_RS03305 0.24 -1.4 721,746 + DDA3937_RS03305 0.24 -0.5 721,746 + DDA3937_RS03305 0.24 -0.2 721,746 + DDA3937_RS03305 0.24 -1.7 721,746 + DDA3937_RS03305 0.24 -2.7 721,746 + DDA3937_RS03305 0.24 -0.9 721,746 + DDA3937_RS03305 0.24 -0.4 721,746 + DDA3937_RS03305 0.24 -0.2 721,746 + +1.1 721,747 - DDA3937_RS03305 0.24 -0.5 721,747 - DDA3937_RS03305 0.24 -0.5 721,747 - DDA3937_RS03305 0.24 -0.8 721,747 - DDA3937_RS03305 0.24 -0.1 721,747 - DDA3937_RS03305 0.24 -0.4 721,747 - DDA3937_RS03305 0.24 +0.5 721,747 - DDA3937_RS03305 0.24 -1.1 721,748 + DDA3937_RS03305 0.25 -0.6 721,748 + DDA3937_RS03305 0.25 -1.1 721,749 - +2.1 721,788 + DDA3937_RS03305 0.30 -0.5 721,788 + DDA3937_RS03305 0.30 -0.1 721,788 + DDA3937_RS03305 0.30 -0.1 721,788 + DDA3937_RS03305 0.30 -2.1 721,788 + DDA3937_RS03305 0.30 -0.2 721,789 - DDA3937_RS03305 0.30 +0.0 721,789 - DDA3937_RS03305 0.30 -0.3 721,789 - -0.5 721,789 - DDA3937_RS03305 0.30 -0.4 721,789 - DDA3937_RS03305 0.30 -1.0 721,875 + DDA3937_RS03305 0.42 -0.2 721,875 + DDA3937_RS03305 0.42 -1.1 721,876 - DDA3937_RS03305 0.42 -0.6 721,877 + DDA3937_RS03305 0.43 -0.3 721,877 + DDA3937_RS03305 0.43 -1.8 721,922 + +0.5 721,922 + DDA3937_RS03305 0.49 +0.0 721,922 + DDA3937_RS03305 0.49 -0.8 721,922 + DDA3937_RS03305 0.49 +0.2 721,922 + +1.1 721,923 - DDA3937_RS03305 0.49 -1.1 721,923 - DDA3937_RS03305 0.49 -1.3 721,923 - DDA3937_RS03305 0.49 -0.7 721,965 + DDA3937_RS03305 0.55 +0.1 721,966 - DDA3937_RS03305 0.55 +0.3 721,966 - DDA3937_RS03305 0.55 -1.6 721,966 - DDA3937_RS03305 0.55 -0.6 721,992 + DDA3937_RS03305 0.59 -0.1 722,091 - DDA3937_RS03305 0.72 +0.3 722,123 + DDA3937_RS03305 0.77 -1.1 722,123 + DDA3937_RS03305 0.77 -2.3 722,124 - DDA3937_RS03305 0.77 +0.3 722,124 - DDA3937_RS03305 0.77 -0.1 722,124 - DDA3937_RS03305 0.77 -1.1 722,303 + -1.7 722,412 - -0.7 722,412 - -1.0 722,413 + +0.2 722,414 - -1.7
Or see this region's nucleotide sequence