Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03275 and DDA3937_RS03280 are separated by 310 nucleotides DDA3937_RS03280 and DDA3937_RS03285 overlap by 20 nucleotides DDA3937_RS03285 and DDA3937_RS03290 are separated by 96 nucleotides DDA3937_RS03290 and DDA3937_RS03295 are separated by 128 nucleotides
DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263
_RS03275
DDA3937_RS03280: DDA3937_RS03280 - FAD assembly factor SdhE, at 717,574 to 717,840
_RS03280
DDA3937_RS03285: DDA3937_RS03285 - protein YgfX, at 717,821 to 718,252
_RS03285
DDA3937_RS03290: DDA3937_RS03290 - flavodoxin FldB, at 718,349 to 718,867
_RS03290
DDA3937_RS03295: DDA3937_RS03295 - MHS family MFS transporter, at 718,996 to 720,321
_RS03295
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 717.284 kb on - strand at 717.284 kb on - strand at 717.284 kb on - strand at 717.306 kb on + strand at 717.306 kb on + strand at 717.307 kb on - strand at 717.353 kb on + strand at 717.409 kb on + strand at 717.409 kb on + strand at 717.410 kb on - strand at 717.410 kb on - strand at 717.420 kb on + strand at 717.421 kb on - strand at 717.440 kb on + strand at 717.441 kb on - strand at 717.443 kb on + strand at 717.455 kb on + strand at 717.455 kb on + strand at 717.456 kb on - strand at 717.465 kb on + strand at 717.481 kb on + strand at 717.481 kb on + strand at 717.481 kb on + strand at 717.481 kb on + strand at 717.482 kb on - strand at 717.482 kb on - strand at 717.502 kb on + strand at 717.502 kb on + strand at 717.507 kb on + strand at 717.513 kb on + strand at 717.514 kb on - strand at 717.550 kb on + strand at 717.551 kb on - strand at 717.551 kb on - strand at 717.597 kb on + strand at 717.598 kb on - strand at 717.668 kb on - strand, within DDA3937_RS03280 at 717.714 kb on - strand, within DDA3937_RS03280 at 717.813 kb on + strand, within DDA3937_RS03280 at 717.814 kb on - strand at 718.071 kb on + strand, within DDA3937_RS03285 at 718.072 kb on - strand, within DDA3937_RS03285 at 718.168 kb on + strand, within DDA3937_RS03285 at 718.168 kb on + strand, within DDA3937_RS03285 at 718.355 kb on + strand at 718.355 kb on + strand at 718.356 kb on - strand at 718.419 kb on + strand, within DDA3937_RS03290 at 718.459 kb on + strand, within DDA3937_RS03290 at 718.460 kb on - strand, within DDA3937_RS03290 at 718.595 kb on + strand, within DDA3937_RS03290 at 718.614 kb on + strand, within DDA3937_RS03290 at 718.731 kb on + strand, within DDA3937_RS03290 at 718.731 kb on + strand, within DDA3937_RS03290 at 718.732 kb on - strand, within DDA3937_RS03290 at 718.779 kb on - strand, within DDA3937_RS03290 at 718.831 kb on - strand at 718.831 kb on - strand at 718.859 kb on + strand at 718.867 kb on + strand at 718.867 kb on + strand at 718.867 kb on + strand at 718.868 kb on - strand at 718.868 kb on - strand at 718.868 kb on - strand at 718.868 kb on - strand at 718.942 kb on + strand at 718.997 kb on + strand at 718.998 kb on - strand at 718.998 kb on - strand at 719.072 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.085 kb on - strand at 719.085 kb on - strand at 719.085 kb on - strand at 719.085 kb on - strand at 719.097 kb on - strand at 719.123 kb on + strand at 719.123 kb on + strand at 719.123 kb on + strand at 719.124 kb on - strand at 719.149 kb on - strand, within DDA3937_RS03295 at 719.161 kb on - strand, within DDA3937_RS03295 at 719.161 kb on - strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.163 kb on - strand, within DDA3937_RS03295
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 717,284 - +0.5 717,284 - +0.8 717,284 - -0.4 717,306 + -1.5 717,306 + +0.6 717,307 - -0.1 717,353 + -0.1 717,409 + +0.4 717,409 + +0.0 717,410 - -0.2 717,410 - -0.6 717,420 + +1.2 717,421 - +0.1 717,440 + -0.1 717,441 - -2.1 717,443 + +0.5 717,455 + -0.3 717,455 + +0.2 717,456 - -1.2 717,465 + +0.5 717,481 + +0.1 717,481 + -0.8 717,481 + -2.7 717,481 + +0.6 717,482 - -0.9 717,482 - -2.1 717,502 + -0.5 717,502 + -0.4 717,507 + +0.2 717,513 + +0.1 717,514 - -0.8 717,550 + +1.1 717,551 - -3.7 717,551 - -0.1 717,597 + -0.1 717,598 - -1.1 717,668 - DDA3937_RS03280 0.35 +0.0 717,714 - DDA3937_RS03280 0.52 -0.3 717,813 + DDA3937_RS03280 0.90 -1.3 717,814 - -2.2 718,071 + DDA3937_RS03285 0.58 -1.5 718,072 - DDA3937_RS03285 0.58 -1.4 718,168 + DDA3937_RS03285 0.80 -0.4 718,168 + DDA3937_RS03285 0.80 -1.1 718,355 + -0.8 718,355 + +0.4 718,356 - -0.6 718,419 + DDA3937_RS03290 0.13 +1.4 718,459 + DDA3937_RS03290 0.21 -0.4 718,460 - DDA3937_RS03290 0.21 +0.5 718,595 + DDA3937_RS03290 0.47 +0.5 718,614 + DDA3937_RS03290 0.51 +1.1 718,731 + DDA3937_RS03290 0.74 +0.1 718,731 + DDA3937_RS03290 0.74 +0.4 718,732 - DDA3937_RS03290 0.74 -0.3 718,779 - DDA3937_RS03290 0.83 +0.8 718,831 - +0.8 718,831 - +0.0 718,859 + -0.6 718,867 + -0.3 718,867 + +1.1 718,867 + -1.3 718,868 - -0.1 718,868 - -0.1 718,868 - +0.4 718,868 - -0.6 718,942 + -1.0 718,997 + -0.3 718,998 - -0.0 718,998 - -0.3 719,072 + +0.4 719,084 + -0.1 719,084 + +0.2 719,084 + -0.1 719,084 + -0.8 719,084 + -0.1 719,084 + +0.2 719,084 + +0.3 719,084 + -0.1 719,085 - -0.2 719,085 - -0.5 719,085 - -0.3 719,085 - -0.4 719,097 - +1.3 719,123 + +0.1 719,123 + -0.8 719,123 + +0.3 719,124 - -0.1 719,149 - DDA3937_RS03295 0.12 -0.9 719,161 - DDA3937_RS03295 0.12 +0.1 719,161 - DDA3937_RS03295 0.12 -0.3 719,162 + DDA3937_RS03295 0.13 -1.5 719,162 + DDA3937_RS03295 0.13 -0.6 719,162 + DDA3937_RS03295 0.13 +0.5 719,162 + DDA3937_RS03295 0.13 +0.2 719,162 + DDA3937_RS03295 0.13 +0.6 719,163 - DDA3937_RS03295 0.13 +0.2
Or see this region's nucleotide sequence