Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03135 and DDA3937_RS03140 are separated by 62 nucleotides DDA3937_RS03140 and DDA3937_RS03145 are separated by 163 nucleotides
DDA3937_RS03135: DDA3937_RS03135 - deoxyribose-phosphate aldolase, at 690,928 to 691,707
_RS03135
DDA3937_RS03140: DDA3937_RS03140 - thymidine phosphorylase, at 691,770 to 693,101
_RS03140
DDA3937_RS03145: DDA3937_RS03145 - phosphopentomutase, at 693,265 to 694,488
_RS03145
Position (kb) 691
692
693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 690.798 kb on + strand at 690.799 kb on - strand at 690.820 kb on + strand at 690.840 kb on + strand at 690.853 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.927 kb on + strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.928 kb on - strand at 690.938 kb on + strand at 690.939 kb on - strand at 690.939 kb on - strand at 690.977 kb on + strand at 690.999 kb on + strand at 691.000 kb on - strand at 691.068 kb on + strand, within DDA3937_RS03135 at 691.069 kb on - strand, within DDA3937_RS03135 at 691.069 kb on - strand at 691.069 kb on - strand at 691.069 kb on - strand, within DDA3937_RS03135 at 691.069 kb on - strand, within DDA3937_RS03135 at 691.072 kb on + strand, within DDA3937_RS03135 at 691.165 kb on - strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.235 kb on + strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.236 kb on - strand, within DDA3937_RS03135 at 691.344 kb on + strand, within DDA3937_RS03135 at 691.344 kb on + strand, within DDA3937_RS03135 at 691.402 kb on - strand, within DDA3937_RS03135 at 691.527 kb on + strand, within DDA3937_RS03135 at 691.571 kb on - strand, within DDA3937_RS03135 at 691.591 kb on - strand, within DDA3937_RS03135 at 691.665 kb on + strand at 691.752 kb on + strand at 691.920 kb on - strand, within DDA3937_RS03140 at 691.920 kb on - strand, within DDA3937_RS03140 at 692.091 kb on + strand, within DDA3937_RS03140 at 692.171 kb on + strand, within DDA3937_RS03140 at 692.172 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.272 kb on - strand, within DDA3937_RS03140 at 692.400 kb on - strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.409 kb on + strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.410 kb on - strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.453 kb on + strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.454 kb on - strand, within DDA3937_RS03140 at 692.456 kb on + strand, within DDA3937_RS03140 at 692.457 kb on - strand, within DDA3937_RS03140 at 692.536 kb on + strand, within DDA3937_RS03140 at 692.537 kb on - strand, within DDA3937_RS03140 at 692.758 kb on - strand, within DDA3937_RS03140 at 692.766 kb on + strand, within DDA3937_RS03140 at 692.767 kb on - strand, within DDA3937_RS03140 at 692.854 kb on + strand, within DDA3937_RS03140 at 692.854 kb on + strand, within DDA3937_RS03140 at 692.855 kb on - strand, within DDA3937_RS03140 at 693.072 kb on + strand at 693.072 kb on + strand at 693.072 kb on + strand at 693.124 kb on + strand at 693.125 kb on - strand at 693.133 kb on + strand at 693.134 kb on - strand at 693.134 kb on - strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.157 kb on + strand at 693.157 kb on + strand at 693.157 kb on + strand at 693.158 kb on - strand at 693.173 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.184 kb on + strand at 693.189 kb on + strand at 693.189 kb on + strand at 693.189 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.193 kb on + strand at 693.194 kb on - strand at 693.205 kb on + strand at 693.206 kb on - strand at 693.209 kb on + strand at 693.210 kb on - strand at 693.221 kb on + strand at 693.221 kb on + strand at 693.221 kb on + strand at 693.225 kb on + strand at 693.225 kb on + strand at 693.226 kb on - strand at 693.240 kb on + strand at 693.258 kb on + strand at 693.258 kb on + strand at 693.262 kb on + strand at 693.262 kb on + strand at 693.262 kb on + strand at 693.263 kb on - strand at 693.279 kb on + strand at 693.279 kb on + strand at 693.280 kb on - strand at 693.611 kb on - strand, within DDA3937_RS03145 at 693.835 kb on + strand, within DDA3937_RS03145 at 694.054 kb on + strand, within DDA3937_RS03145 at 694.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 690,798 + +0.3 690,799 - -0.4 690,820 + +0.0 690,840 + -0.1 690,853 + +0.2 690,927 + -0.5 690,927 + -0.1 690,927 + +0.0 690,927 + -0.2 690,927 + -1.3 690,927 + -0.3 690,928 - -0.4 690,928 - +0.0 690,928 - -1.9 690,928 - -1.6 690,928 - +0.1 690,938 + -0.1 690,939 - +0.5 690,939 - -1.3 690,977 + +1.0 690,999 + -2.8 691,000 - +0.1 691,068 + DDA3937_RS03135 0.18 +0.2 691,069 - DDA3937_RS03135 0.18 +0.4 691,069 - -1.5 691,069 - -1.1 691,069 - DDA3937_RS03135 0.18 -0.9 691,069 - DDA3937_RS03135 0.18 -1.5 691,072 + DDA3937_RS03135 0.18 +0.0 691,165 - DDA3937_RS03135 0.30 +2.1 691,235 + DDA3937_RS03135 0.39 -1.5 691,235 + DDA3937_RS03135 0.39 -0.7 691,235 + DDA3937_RS03135 0.39 +0.2 691,235 + DDA3937_RS03135 0.39 +1.5 691,235 + DDA3937_RS03135 0.39 -1.5 691,235 + DDA3937_RS03135 0.39 -0.1 691,235 + DDA3937_RS03135 0.39 -0.5 691,235 + DDA3937_RS03135 0.39 -0.5 691,236 - DDA3937_RS03135 0.39 -0.3 691,236 - DDA3937_RS03135 0.39 +0.7 691,236 - DDA3937_RS03135 0.39 +0.1 691,236 - DDA3937_RS03135 0.39 -0.2 691,236 - DDA3937_RS03135 0.39 -0.5 691,344 + DDA3937_RS03135 0.53 -0.5 691,344 + DDA3937_RS03135 0.53 -0.6 691,402 - DDA3937_RS03135 0.61 -0.5 691,527 + DDA3937_RS03135 0.77 +0.7 691,571 - DDA3937_RS03135 0.82 -0.2 691,591 - DDA3937_RS03135 0.85 +0.7 691,665 + -0.3 691,752 + -0.5 691,920 - DDA3937_RS03140 0.11 +0.2 691,920 - DDA3937_RS03140 0.11 -0.2 692,091 + DDA3937_RS03140 0.24 +0.7 692,171 + DDA3937_RS03140 0.30 +0.9 692,172 - DDA3937_RS03140 0.30 +1.0 692,272 - DDA3937_RS03140 0.38 -0.7 692,272 - DDA3937_RS03140 0.38 +1.1 692,400 - DDA3937_RS03140 0.47 +1.2 692,409 + DDA3937_RS03140 0.48 -0.1 692,409 + DDA3937_RS03140 0.48 +0.5 692,410 - DDA3937_RS03140 0.48 +1.3 692,410 - DDA3937_RS03140 0.48 -0.3 692,410 - DDA3937_RS03140 0.48 +0.7 692,453 + DDA3937_RS03140 0.51 +0.1 692,453 + DDA3937_RS03140 0.51 +1.6 692,453 + DDA3937_RS03140 0.51 +0.2 692,454 - DDA3937_RS03140 0.51 -1.1 692,454 - DDA3937_RS03140 0.51 -0.5 692,454 - DDA3937_RS03140 0.51 -1.1 692,454 - DDA3937_RS03140 0.51 +0.3 692,454 - DDA3937_RS03140 0.51 +0.1 692,454 - DDA3937_RS03140 0.51 -0.4 692,454 - DDA3937_RS03140 0.51 +0.2 692,456 + DDA3937_RS03140 0.52 +0.7 692,457 - DDA3937_RS03140 0.52 -0.2 692,536 + DDA3937_RS03140 0.58 -0.5 692,537 - DDA3937_RS03140 0.58 +0.2 692,758 - DDA3937_RS03140 0.74 -0.6 692,766 + DDA3937_RS03140 0.75 +1.0 692,767 - DDA3937_RS03140 0.75 +0.5 692,854 + DDA3937_RS03140 0.81 -0.5 692,854 + DDA3937_RS03140 0.81 -1.8 692,855 - DDA3937_RS03140 0.81 -2.9 693,072 + +0.3 693,072 + +0.4 693,072 + +0.6 693,124 + +1.3 693,125 - -1.1 693,133 + +0.3 693,134 - -0.5 693,134 - -0.1 693,141 + -0.4 693,141 + +0.8 693,141 + -1.2 693,157 + +0.4 693,157 + -0.2 693,157 + -2.1 693,158 - -1.8 693,173 + +1.2 693,184 + +1.1 693,184 + +1.3 693,184 + +0.9 693,184 + +1.2 693,189 + +1.0 693,189 + -0.9 693,189 + -0.5 693,193 + -1.2 693,193 + +0.7 693,193 + -1.1 693,193 + -0.5 693,194 - +0.5 693,205 + -0.1 693,206 - -0.3 693,209 + -0.3 693,210 - -0.6 693,221 + +0.1 693,221 + -0.1 693,221 + +0.1 693,225 + -1.2 693,225 + -0.3 693,226 - +0.2 693,240 + -0.7 693,258 + -1.1 693,258 + +0.3 693,262 + -0.5 693,262 + +0.5 693,262 + -0.9 693,263 - -0.5 693,279 + +1.1 693,279 + -0.1 693,280 - -1.1 693,611 - DDA3937_RS03145 0.28 -1.5 693,835 + DDA3937_RS03145 0.47 -0.2 694,054 + DDA3937_RS03145 0.64 -0.5 694,089 + -1.1
Or see this region's nucleotide sequence