Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03100 and DDA3937_RS03105 are separated by 65 nucleotides DDA3937_RS03105 and DDA3937_RS03110 are separated by 117 nucleotides
DDA3937_RS03100: DDA3937_RS03100 - DEAD/DEAH family ATP-dependent RNA helicase, at 683,817 to 685,712
_RS03100
DDA3937_RS03105: DDA3937_RS03105 - LLM class flavin-dependent oxidoreductase, at 685,778 to 686,797
_RS03105
DDA3937_RS03110: DDA3937_RS03110 - U32 family peptidase, at 686,915 to 687,793
_RS03110
Position (kb) 685
686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 685.023 kb on + strand, within DDA3937_RS03100 at 685.024 kb on - strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.333 kb on + strand, within DDA3937_RS03100 at 685.347 kb on - strand, within DDA3937_RS03100 at 685.611 kb on - strand at 685.774 kb on + strand at 685.862 kb on + strand at 686.063 kb on - strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.212 kb on + strand, within DDA3937_RS03105 at 686.212 kb on + strand, within DDA3937_RS03105 at 686.277 kb on + strand, within DDA3937_RS03105 at 686.278 kb on - strand, within DDA3937_RS03105 at 686.337 kb on - strand, within DDA3937_RS03105 at 686.384 kb on + strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.485 kb on + strand, within DDA3937_RS03105 at 686.581 kb on + strand, within DDA3937_RS03105 at 686.604 kb on + strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.797 kb on + strand at 686.797 kb on + strand at 686.798 kb on - strand at 686.798 kb on - strand at 686.798 kb on - strand at 686.798 kb on - strand at 686.811 kb on + strand at 686.811 kb on + strand at 686.811 kb on + strand at 686.811 kb on + strand at 686.812 kb on - strand at 686.812 kb on - strand at 686.812 kb on - strand at 686.860 kb on + strand at 686.865 kb on + strand at 686.865 kb on + strand at 686.865 kb on + strand at 686.866 kb on - strand at 686.866 kb on - strand at 686.917 kb on - strand at 686.917 kb on - strand at 687.109 kb on + strand at 687.111 kb on + strand, within DDA3937_RS03110 at 687.112 kb on - strand at 687.112 kb on - strand, within DDA3937_RS03110 at 687.112 kb on - strand, within DDA3937_RS03110 at 687.112 kb on - strand, within DDA3937_RS03110 at 687.118 kb on - strand, within DDA3937_RS03110 at 687.195 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.288 kb on + strand, within DDA3937_RS03110 at 687.289 kb on - strand, within DDA3937_RS03110 at 687.344 kb on - strand, within DDA3937_RS03110 at 687.344 kb on - strand, within DDA3937_RS03110 at 687.385 kb on + strand, within DDA3937_RS03110 at 687.385 kb on + strand, within DDA3937_RS03110 at 687.386 kb on - strand, within DDA3937_RS03110 at 687.386 kb on - strand, within DDA3937_RS03110 at 687.386 kb on - strand, within DDA3937_RS03110 at 687.429 kb on + strand, within DDA3937_RS03110 at 687.429 kb on + strand, within DDA3937_RS03110 at 687.430 kb on - strand, within DDA3937_RS03110 at 687.430 kb on - strand, within DDA3937_RS03110 at 687.436 kb on + strand, within DDA3937_RS03110 at 687.436 kb on + strand, within DDA3937_RS03110 at 687.437 kb on - strand, within DDA3937_RS03110 at 687.437 kb on - strand, within DDA3937_RS03110 at 687.437 kb on - strand, within DDA3937_RS03110 at 687.438 kb on + strand, within DDA3937_RS03110 at 687.438 kb on + strand, within DDA3937_RS03110 at 687.439 kb on - strand, within DDA3937_RS03110 at 687.439 kb on - strand, within DDA3937_RS03110 at 687.439 kb on - strand, within DDA3937_RS03110 at 687.543 kb on + strand, within DDA3937_RS03110 at 687.543 kb on + strand, within DDA3937_RS03110 at 687.697 kb on - strand, within DDA3937_RS03110 at 687.732 kb on + strand at 687.733 kb on - strand at 687.762 kb on + strand at 687.763 kb on - strand at 687.763 kb on - strand at 687.763 kb on - strand at 687.765 kb on + strand at 687.765 kb on + strand at 687.765 kb on + strand at 687.765 kb on + strand at 687.766 kb on - strand at 687.766 kb on - strand at 687.786 kb on + strand at 687.786 kb on + strand at 687.786 kb on + strand at 687.787 kb on - strand at 687.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 685,023 + DDA3937_RS03100 0.64 +0.4 685,024 - DDA3937_RS03100 0.64 +0.5 685,211 + DDA3937_RS03100 0.74 +2.5 685,211 + DDA3937_RS03100 0.74 +0.1 685,211 + DDA3937_RS03100 0.74 -2.5 685,333 + DDA3937_RS03100 0.80 -0.1 685,347 - DDA3937_RS03100 0.81 -1.5 685,611 - -0.8 685,774 + -0.1 685,862 + -0.2 686,063 - DDA3937_RS03105 0.28 +1.2 686,135 + DDA3937_RS03105 0.35 +1.5 686,135 + DDA3937_RS03105 0.35 +0.9 686,135 + DDA3937_RS03105 0.35 +0.0 686,136 - DDA3937_RS03105 0.35 -1.9 686,136 - DDA3937_RS03105 0.35 +0.5 686,136 - DDA3937_RS03105 0.35 +0.1 686,136 - DDA3937_RS03105 0.35 -0.6 686,136 - DDA3937_RS03105 0.35 -0.1 686,136 - DDA3937_RS03105 0.35 +0.1 686,145 + DDA3937_RS03105 0.36 -2.2 686,145 + DDA3937_RS03105 0.36 +0.1 686,146 - DDA3937_RS03105 0.36 -1.4 686,146 - +1.8 686,146 - DDA3937_RS03105 0.36 +1.1 686,146 - +0.8 686,212 + DDA3937_RS03105 0.43 -0.2 686,212 + DDA3937_RS03105 0.43 +0.7 686,277 + DDA3937_RS03105 0.49 -0.9 686,278 - DDA3937_RS03105 0.49 +0.5 686,337 - DDA3937_RS03105 0.55 +0.2 686,384 + DDA3937_RS03105 0.59 -1.5 686,385 - DDA3937_RS03105 0.60 +1.8 686,385 - DDA3937_RS03105 0.60 -0.5 686,385 - DDA3937_RS03105 0.60 +0.4 686,485 + DDA3937_RS03105 0.69 +0.9 686,581 + DDA3937_RS03105 0.79 +1.1 686,604 + DDA3937_RS03105 0.81 -0.1 686,605 - DDA3937_RS03105 0.81 +0.5 686,605 - DDA3937_RS03105 0.81 -0.9 686,605 - DDA3937_RS03105 0.81 +0.8 686,623 + DDA3937_RS03105 0.83 +0.6 686,623 + DDA3937_RS03105 0.83 +1.5 686,624 - DDA3937_RS03105 0.83 -0.2 686,624 - DDA3937_RS03105 0.83 -0.2 686,624 - DDA3937_RS03105 0.83 -0.5 686,624 - DDA3937_RS03105 0.83 +0.8 686,624 - DDA3937_RS03105 0.83 +0.3 686,624 - DDA3937_RS03105 0.83 +0.7 686,797 + -1.5 686,797 + +1.1 686,798 - +0.5 686,798 - -0.8 686,798 - +0.2 686,798 - +0.1 686,811 + -0.3 686,811 + -1.1 686,811 + -0.7 686,811 + -1.5 686,812 - -0.6 686,812 - -0.7 686,812 - +0.0 686,860 + -0.5 686,865 + +1.5 686,865 + -0.3 686,865 + +0.2 686,866 - -0.8 686,866 - -1.5 686,917 - +0.1 686,917 - +0.1 687,109 + +0.1 687,111 + DDA3937_RS03110 0.22 -2.7 687,112 - +0.5 687,112 - DDA3937_RS03110 0.22 +0.2 687,112 - DDA3937_RS03110 0.22 -1.2 687,112 - DDA3937_RS03110 0.22 -0.1 687,118 - DDA3937_RS03110 0.23 -2.1 687,195 + DDA3937_RS03110 0.32 -0.3 687,288 + DDA3937_RS03110 0.42 -0.0 687,288 + DDA3937_RS03110 0.42 -3.3 687,288 + DDA3937_RS03110 0.42 +1.7 687,288 + DDA3937_RS03110 0.42 -1.0 687,289 - DDA3937_RS03110 0.43 +0.2 687,344 - DDA3937_RS03110 0.49 +0.1 687,344 - DDA3937_RS03110 0.49 -0.5 687,385 + DDA3937_RS03110 0.53 -0.7 687,385 + DDA3937_RS03110 0.53 -0.2 687,386 - DDA3937_RS03110 0.54 +0.9 687,386 - DDA3937_RS03110 0.54 -0.8 687,386 - DDA3937_RS03110 0.54 +0.2 687,429 + DDA3937_RS03110 0.58 -0.8 687,429 + DDA3937_RS03110 0.58 +0.5 687,430 - DDA3937_RS03110 0.59 +0.3 687,430 - DDA3937_RS03110 0.59 -0.3 687,436 + DDA3937_RS03110 0.59 -1.1 687,436 + DDA3937_RS03110 0.59 -0.5 687,437 - DDA3937_RS03110 0.59 -0.1 687,437 - DDA3937_RS03110 0.59 +0.3 687,437 - DDA3937_RS03110 0.59 +0.2 687,438 + DDA3937_RS03110 0.59 +0.7 687,438 + DDA3937_RS03110 0.59 +0.1 687,439 - DDA3937_RS03110 0.60 +0.1 687,439 - DDA3937_RS03110 0.60 +0.2 687,439 - DDA3937_RS03110 0.60 -2.0 687,543 + DDA3937_RS03110 0.71 -0.2 687,543 + DDA3937_RS03110 0.71 -0.2 687,697 - DDA3937_RS03110 0.89 +0.3 687,732 + +1.5 687,733 - -1.1 687,762 + +0.2 687,763 - -1.3 687,763 - +0.7 687,763 - -0.7 687,765 + -0.1 687,765 + +0.1 687,765 + -0.0 687,765 + +0.1 687,766 - -0.2 687,766 - +0.7 687,786 + +0.2 687,786 + -0.5 687,786 + -0.5 687,787 - -0.5 687,787 - -0.7
Or see this region's nucleotide sequence