Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02910 and DDA3937_RS02915 are separated by 12 nucleotides DDA3937_RS02915 and DDA3937_RS02920 are separated by 93 nucleotides
DDA3937_RS02910: DDA3937_RS02910 - FAD:protein FMN transferase, at 645,429 to 646,409
_RS02910
DDA3937_RS02915: DDA3937_RS02915 - TetR/AcrR family transcriptional regulator, at 646,422 to 647,003
_RS02915
DDA3937_RS02920: DDA3937_RS02920 - aldo/keto reductase, at 647,097 to 648,146
_RS02920
Position (kb)
646
647
648 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 645.456 kb on + strand at 645.614 kb on + strand, within DDA3937_RS02910 at 645.656 kb on + strand, within DDA3937_RS02910 at 645.657 kb on - strand, within DDA3937_RS02910 at 645.891 kb on + strand at 645.891 kb on + strand, within DDA3937_RS02910 at 645.891 kb on + strand, within DDA3937_RS02910 at 645.891 kb on + strand, within DDA3937_RS02910 at 645.891 kb on + strand, within DDA3937_RS02910 at 645.892 kb on - strand, within DDA3937_RS02910 at 645.892 kb on - strand, within DDA3937_RS02910 at 645.892 kb on - strand, within DDA3937_RS02910 at 645.892 kb on - strand, within DDA3937_RS02910 at 645.893 kb on + strand at 645.894 kb on - strand, within DDA3937_RS02910 at 645.936 kb on + strand, within DDA3937_RS02910 at 645.936 kb on + strand, within DDA3937_RS02910 at 645.936 kb on + strand, within DDA3937_RS02910 at 645.936 kb on + strand, within DDA3937_RS02910 at 645.936 kb on + strand, within DDA3937_RS02910 at 645.936 kb on + strand, within DDA3937_RS02910 at 645.937 kb on - strand, within DDA3937_RS02910 at 645.937 kb on - strand, within DDA3937_RS02910 at 646.102 kb on - strand, within DDA3937_RS02910 at 646.110 kb on + strand, within DDA3937_RS02910 at 646.110 kb on + strand, within DDA3937_RS02910 at 646.110 kb on + strand, within DDA3937_RS02910 at 646.110 kb on + strand, within DDA3937_RS02910 at 646.111 kb on - strand, within DDA3937_RS02910 at 646.111 kb on - strand, within DDA3937_RS02910 at 646.111 kb on - strand, within DDA3937_RS02910 at 646.135 kb on - strand, within DDA3937_RS02910 at 646.135 kb on - strand, within DDA3937_RS02910 at 646.135 kb on - strand, within DDA3937_RS02910 at 646.135 kb on - strand, within DDA3937_RS02910 at 646.135 kb on - strand, within DDA3937_RS02910 at 646.142 kb on + strand, within DDA3937_RS02910 at 646.143 kb on - strand, within DDA3937_RS02910 at 646.143 kb on - strand, within DDA3937_RS02910 at 646.143 kb on - strand, within DDA3937_RS02910 at 646.143 kb on - strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.230 kb on + strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.231 kb on - strand, within DDA3937_RS02910 at 646.275 kb on + strand, within DDA3937_RS02910 at 646.275 kb on + strand, within DDA3937_RS02910 at 646.275 kb on + strand, within DDA3937_RS02910 at 646.276 kb on - strand, within DDA3937_RS02910 at 646.276 kb on - strand, within DDA3937_RS02910 at 646.353 kb on + strand at 646.354 kb on - strand at 646.354 kb on - strand at 646.361 kb on + strand at 646.362 kb on - strand at 646.381 kb on - strand at 646.381 kb on - strand at 646.381 kb on - strand at 646.389 kb on + strand at 646.390 kb on - strand at 646.390 kb on - strand at 646.390 kb on - strand at 646.390 kb on - strand at 646.397 kb on - strand at 646.423 kb on + strand at 646.424 kb on - strand at 646.622 kb on - strand, within DDA3937_RS02915 at 646.727 kb on - strand, within DDA3937_RS02915 at 646.727 kb on - strand, within DDA3937_RS02915 at 646.727 kb on - strand, within DDA3937_RS02915 at 646.735 kb on - strand at 646.735 kb on - strand, within DDA3937_RS02915 at 646.788 kb on + strand, within DDA3937_RS02915 at 646.788 kb on + strand, within DDA3937_RS02915 at 646.788 kb on + strand, within DDA3937_RS02915 at 646.788 kb on + strand, within DDA3937_RS02915 at 646.788 kb on + strand, within DDA3937_RS02915 at 646.788 kb on + strand, within DDA3937_RS02915 at 646.789 kb on - strand, within DDA3937_RS02915 at 646.789 kb on - strand, within DDA3937_RS02915 at 646.789 kb on - strand, within DDA3937_RS02915 at 646.811 kb on + strand, within DDA3937_RS02915 at 646.830 kb on + strand, within DDA3937_RS02915 at 646.830 kb on + strand, within DDA3937_RS02915 at 646.830 kb on + strand, within DDA3937_RS02915 at 646.858 kb on + strand at 646.858 kb on + strand, within DDA3937_RS02915 at 646.859 kb on - strand, within DDA3937_RS02915 at 646.992 kb on + strand at 647.037 kb on + strand at 647.037 kb on + strand at 647.037 kb on + strand at 647.037 kb on + strand at 647.037 kb on + strand at 647.037 kb on + strand at 647.038 kb on - strand at 647.038 kb on - strand at 647.038 kb on - strand at 647.038 kb on - strand at 647.050 kb on + strand at 647.062 kb on + strand at 647.062 kb on + strand at 647.169 kb on + strand at 647.170 kb on - strand at 647.238 kb on + strand, within DDA3937_RS02920 at 647.238 kb on + strand, within DDA3937_RS02920 at 647.238 kb on + strand, within DDA3937_RS02920 at 647.238 kb on + strand, within DDA3937_RS02920 at 647.239 kb on - strand, within DDA3937_RS02920 at 647.239 kb on - strand, within DDA3937_RS02920 at 647.264 kb on + strand, within DDA3937_RS02920 at 647.264 kb on + strand, within DDA3937_RS02920 at 647.264 kb on + strand, within DDA3937_RS02920 at 647.264 kb on + strand, within DDA3937_RS02920 at 647.265 kb on - strand, within DDA3937_RS02920 at 647.265 kb on - strand at 647.265 kb on - strand, within DDA3937_RS02920 at 647.301 kb on - strand, within DDA3937_RS02920 at 647.301 kb on - strand, within DDA3937_RS02920 at 647.593 kb on + strand at 647.594 kb on - strand, within DDA3937_RS02920 at 647.594 kb on - strand, within DDA3937_RS02920 at 647.615 kb on + strand, within DDA3937_RS02920 at 647.615 kb on + strand, within DDA3937_RS02920 at 647.692 kb on + strand, within DDA3937_RS02920 at 647.781 kb on + strand, within DDA3937_RS02920 at 647.782 kb on - strand, within DDA3937_RS02920 at 647.782 kb on - strand, within DDA3937_RS02920 at 647.782 kb on - strand, within DDA3937_RS02920 at 647.784 kb on - strand, within DDA3937_RS02920 at 647.784 kb on - strand, within DDA3937_RS02920 at 647.784 kb on - strand, within DDA3937_RS02920 at 647.789 kb on + strand, within DDA3937_RS02920 at 647.790 kb on - strand, within DDA3937_RS02920 at 647.844 kb on - strand, within DDA3937_RS02920 at 647.844 kb on - strand, within DDA3937_RS02920 at 647.889 kb on + strand, within DDA3937_RS02920 at 647.890 kb on - strand, within DDA3937_RS02920 at 647.890 kb on - strand, within DDA3937_RS02920 at 647.890 kb on - strand, within DDA3937_RS02920 at 647.896 kb on + strand, within DDA3937_RS02920 at 647.896 kb on + strand, within DDA3937_RS02920 at 647.896 kb on + strand, within DDA3937_RS02920 at 647.897 kb on - strand, within DDA3937_RS02920 at 647.897 kb on - strand, within DDA3937_RS02920 at 647.897 kb on - strand, within DDA3937_RS02920 at 647.897 kb on - strand, within DDA3937_RS02920 at 647.974 kb on + strand, within DDA3937_RS02920 at 647.994 kb on - strand, within DDA3937_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 645,456 + -0.0 645,614 + DDA3937_RS02910 0.19 -0.3 645,656 + DDA3937_RS02910 0.23 -0.8 645,657 - DDA3937_RS02910 0.23 -2.2 645,891 + -0.1 645,891 + DDA3937_RS02910 0.47 +0.4 645,891 + DDA3937_RS02910 0.47 -0.1 645,891 + DDA3937_RS02910 0.47 +0.7 645,891 + DDA3937_RS02910 0.47 +0.3 645,892 - DDA3937_RS02910 0.47 +0.0 645,892 - DDA3937_RS02910 0.47 +0.4 645,892 - DDA3937_RS02910 0.47 -1.3 645,892 - DDA3937_RS02910 0.47 -2.6 645,893 + -1.1 645,894 - DDA3937_RS02910 0.47 -0.9 645,936 + DDA3937_RS02910 0.52 -1.1 645,936 + DDA3937_RS02910 0.52 +0.1 645,936 + DDA3937_RS02910 0.52 -0.5 645,936 + DDA3937_RS02910 0.52 -1.1 645,936 + DDA3937_RS02910 0.52 +0.4 645,936 + DDA3937_RS02910 0.52 +0.4 645,937 - DDA3937_RS02910 0.52 -1.1 645,937 - DDA3937_RS02910 0.52 -1.3 646,102 - DDA3937_RS02910 0.69 +0.2 646,110 + DDA3937_RS02910 0.69 -0.6 646,110 + DDA3937_RS02910 0.69 -0.3 646,110 + DDA3937_RS02910 0.69 -0.0 646,110 + DDA3937_RS02910 0.69 -0.9 646,111 - DDA3937_RS02910 0.70 +0.4 646,111 - DDA3937_RS02910 0.70 +0.4 646,111 - DDA3937_RS02910 0.70 +0.7 646,135 - DDA3937_RS02910 0.72 -1.1 646,135 - DDA3937_RS02910 0.72 -0.2 646,135 - DDA3937_RS02910 0.72 -1.5 646,135 - DDA3937_RS02910 0.72 -0.4 646,135 - DDA3937_RS02910 0.72 -0.5 646,142 + DDA3937_RS02910 0.73 +0.3 646,143 - DDA3937_RS02910 0.73 -0.2 646,143 - DDA3937_RS02910 0.73 -1.1 646,143 - DDA3937_RS02910 0.73 -0.0 646,143 - DDA3937_RS02910 0.73 -1.5 646,230 + DDA3937_RS02910 0.82 +0.5 646,230 + DDA3937_RS02910 0.82 +0.1 646,230 + DDA3937_RS02910 0.82 +0.0 646,230 + DDA3937_RS02910 0.82 -1.1 646,230 + DDA3937_RS02910 0.82 +0.9 646,230 + DDA3937_RS02910 0.82 +0.8 646,230 + DDA3937_RS02910 0.82 -1.5 646,231 - DDA3937_RS02910 0.82 -0.2 646,231 - DDA3937_RS02910 0.82 +0.3 646,231 - DDA3937_RS02910 0.82 -1.3 646,231 - DDA3937_RS02910 0.82 +0.1 646,231 - DDA3937_RS02910 0.82 -0.2 646,231 - DDA3937_RS02910 0.82 -0.2 646,231 - DDA3937_RS02910 0.82 +0.4 646,231 - DDA3937_RS02910 0.82 +0.6 646,231 - DDA3937_RS02910 0.82 -0.3 646,275 + DDA3937_RS02910 0.86 -0.2 646,275 + DDA3937_RS02910 0.86 -0.2 646,275 + DDA3937_RS02910 0.86 +0.1 646,276 - DDA3937_RS02910 0.86 -0.4 646,276 - DDA3937_RS02910 0.86 -0.0 646,353 + +0.1 646,354 - -0.2 646,354 - -0.5 646,361 + -0.5 646,362 - +0.5 646,381 - -0.9 646,381 - -0.2 646,381 - +0.0 646,389 + -0.4 646,390 - -0.4 646,390 - +0.1 646,390 - +0.3 646,390 - -1.4 646,397 - +0.5 646,423 + -0.6 646,424 - -0.8 646,622 - DDA3937_RS02915 0.34 -0.7 646,727 - DDA3937_RS02915 0.52 -2.2 646,727 - DDA3937_RS02915 0.52 -0.2 646,727 - DDA3937_RS02915 0.52 -0.7 646,735 - -0.8 646,735 - DDA3937_RS02915 0.54 -1.1 646,788 + DDA3937_RS02915 0.63 -1.1 646,788 + DDA3937_RS02915 0.63 -1.6 646,788 + DDA3937_RS02915 0.63 -1.2 646,788 + DDA3937_RS02915 0.63 -1.5 646,788 + DDA3937_RS02915 0.63 -3.1 646,788 + DDA3937_RS02915 0.63 -1.0 646,789 - DDA3937_RS02915 0.63 -1.5 646,789 - DDA3937_RS02915 0.63 -1.8 646,789 - DDA3937_RS02915 0.63 -2.3 646,811 + DDA3937_RS02915 0.67 -1.8 646,830 + DDA3937_RS02915 0.70 -1.1 646,830 + DDA3937_RS02915 0.70 -2.3 646,830 + DDA3937_RS02915 0.70 -2.5 646,858 + -1.1 646,858 + DDA3937_RS02915 0.75 +0.1 646,859 - DDA3937_RS02915 0.75 -1.0 646,992 + +1.3 647,037 + -0.1 647,037 + -1.8 647,037 + +1.2 647,037 + -0.7 647,037 + -0.8 647,037 + +0.2 647,038 - -0.1 647,038 - +0.1 647,038 - -0.4 647,038 - -0.1 647,050 + -0.9 647,062 + +0.8 647,062 + +0.2 647,169 + -0.6 647,170 - +0.5 647,238 + DDA3937_RS02920 0.13 +0.3 647,238 + DDA3937_RS02920 0.13 +0.2 647,238 + DDA3937_RS02920 0.13 +2.5 647,238 + DDA3937_RS02920 0.13 -1.5 647,239 - DDA3937_RS02920 0.14 -2.8 647,239 - DDA3937_RS02920 0.14 -1.0 647,264 + DDA3937_RS02920 0.16 -0.6 647,264 + DDA3937_RS02920 0.16 -0.8 647,264 + DDA3937_RS02920 0.16 -1.3 647,264 + DDA3937_RS02920 0.16 -1.3 647,265 - DDA3937_RS02920 0.16 +0.6 647,265 - -1.5 647,265 - DDA3937_RS02920 0.16 +0.2 647,301 - DDA3937_RS02920 0.19 +0.1 647,301 - DDA3937_RS02920 0.19 +0.1 647,593 + -0.5 647,594 - DDA3937_RS02920 0.47 -0.3 647,594 - DDA3937_RS02920 0.47 -1.1 647,615 + DDA3937_RS02920 0.49 -0.5 647,615 + DDA3937_RS02920 0.49 +0.2 647,692 + DDA3937_RS02920 0.57 +0.8 647,781 + DDA3937_RS02920 0.65 +0.6 647,782 - DDA3937_RS02920 0.65 -0.7 647,782 - DDA3937_RS02920 0.65 +0.1 647,782 - DDA3937_RS02920 0.65 -1.4 647,784 - DDA3937_RS02920 0.65 -0.6 647,784 - DDA3937_RS02920 0.65 +0.1 647,784 - DDA3937_RS02920 0.65 -0.3 647,789 + DDA3937_RS02920 0.66 -0.1 647,790 - DDA3937_RS02920 0.66 -1.5 647,844 - DDA3937_RS02920 0.71 -0.5 647,844 - DDA3937_RS02920 0.71 -0.1 647,889 + DDA3937_RS02920 0.75 -0.6 647,890 - DDA3937_RS02920 0.76 +0.0 647,890 - DDA3937_RS02920 0.76 -0.5 647,890 - DDA3937_RS02920 0.76 -0.6 647,896 + DDA3937_RS02920 0.76 -2.2 647,896 + DDA3937_RS02920 0.76 -0.1 647,896 + DDA3937_RS02920 0.76 -2.3 647,897 - DDA3937_RS02920 0.76 -0.1 647,897 - DDA3937_RS02920 0.76 +0.1 647,897 - DDA3937_RS02920 0.76 -0.2 647,897 - DDA3937_RS02920 0.76 -0.5 647,974 + DDA3937_RS02920 0.84 -1.1 647,994 - DDA3937_RS02920 0.85 -0.4
Or see this region's nucleotide sequence