Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02845 and DDA3937_RS02850 are separated by 450 nucleotides DDA3937_RS02850 and DDA3937_RS02855 are separated by 93 nucleotides DDA3937_RS02855 and DDA3937_RS02860 are separated by 308 nucleotides
DDA3937_RS02845: DDA3937_RS02845 - TerC family protein, at 627,260 to 628,213
_RS02845
DDA3937_RS02850: DDA3937_RS02850 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 628,664 to 629,836
_RS02850
DDA3937_RS02855: DDA3937_RS02855 - hypothetical protein, at 629,930 to 630,226
_RS02855
DDA3937_RS02860: DDA3937_RS02860 - pectate lyase, at 630,535 to 631,482
_RS02860
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.780 kb on + strand, within DDA3937_RS02845 at 627.781 kb on - strand, within DDA3937_RS02845 at 627.781 kb on - strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.836 kb on - strand, within DDA3937_RS02845 at 627.836 kb on - strand, within DDA3937_RS02845 at 627.842 kb on + strand, within DDA3937_RS02845 at 627.843 kb on - strand, within DDA3937_RS02845 at 627.864 kb on + strand, within DDA3937_RS02845 at 627.864 kb on + strand, within DDA3937_RS02845 at 627.865 kb on - strand, within DDA3937_RS02845 at 627.906 kb on + strand, within DDA3937_RS02845 at 627.906 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.030 kb on - strand, within DDA3937_RS02845 at 628.030 kb on - strand, within DDA3937_RS02845 at 628.055 kb on + strand, within DDA3937_RS02845 at 628.134 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.209 kb on - strand at 628.209 kb on - strand at 628.213 kb on + strand at 628.213 kb on + strand at 628.214 kb on - strand at 628.214 kb on - strand at 628.214 kb on - strand at 628.219 kb on + strand at 628.220 kb on - strand at 628.220 kb on - strand at 628.309 kb on + strand at 628.310 kb on - strand at 628.312 kb on + strand at 628.313 kb on - strand at 628.313 kb on - strand at 628.323 kb on + strand at 628.323 kb on + strand at 628.324 kb on - strand at 628.352 kb on + strand at 628.352 kb on + strand at 628.352 kb on + strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.359 kb on + strand at 628.359 kb on + strand at 628.359 kb on + strand at 628.360 kb on - strand at 628.368 kb on + strand at 628.368 kb on + strand at 628.369 kb on - strand at 628.369 kb on - strand at 628.377 kb on + strand at 628.377 kb on + strand at 628.378 kb on - strand at 628.378 kb on - strand at 628.378 kb on - strand at 628.411 kb on + strand at 628.411 kb on + strand at 628.411 kb on + strand at 628.412 kb on - strand at 628.412 kb on - strand at 628.412 kb on - strand at 628.436 kb on + strand at 628.460 kb on + strand at 628.460 kb on + strand at 628.461 kb on - strand at 628.461 kb on - strand at 628.461 kb on - strand at 628.465 kb on + strand at 628.475 kb on - strand at 628.581 kb on - strand at 628.607 kb on - strand at 628.607 kb on - strand at 628.648 kb on + strand at 628.649 kb on - strand at 628.710 kb on - strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.764 kb on - strand at 628.764 kb on - strand at 628.851 kb on + strand, within DDA3937_RS02850 at 628.851 kb on + strand, within DDA3937_RS02850 at 628.887 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.155 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.297 kb on + strand, within DDA3937_RS02850 at 629.298 kb on - strand, within DDA3937_RS02850 at 629.298 kb on - strand, within DDA3937_RS02850 at 629.312 kb on + strand, within DDA3937_RS02850 at 629.312 kb on + strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.313 kb on - strand, within DDA3937_RS02850 at 629.462 kb on + strand, within DDA3937_RS02850 at 629.462 kb on + strand, within DDA3937_RS02850 at 629.463 kb on - strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.486 kb on + strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.487 kb on - strand, within DDA3937_RS02850 at 629.489 kb on - strand, within DDA3937_RS02850 at 629.489 kb on - strand, within DDA3937_RS02850 at 629.738 kb on + strand at 629.817 kb on + strand at 629.881 kb on + strand at 629.881 kb on + strand at 629.881 kb on + strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.882 kb on - strand at 629.909 kb on + strand at 629.909 kb on + strand at 629.910 kb on - strand at 629.929 kb on + strand at 629.929 kb on + strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.930 kb on - strand at 629.958 kb on + strand at 630.024 kb on - strand, within DDA3937_RS02855 at 630.140 kb on - strand, within DDA3937_RS02855 at 630.210 kb on - strand at 630.247 kb on - strand at 630.264 kb on - strand at 630.432 kb on - strand at 630.454 kb on - strand at 630.515 kb on - strand at 630.531 kb on + strand at 630.532 kb on - strand at 630.542 kb on - strand at 630.624 kb on + strand at 630.624 kb on + strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.697 kb on - strand, within DDA3937_RS02860 at 630.777 kb on + strand, within DDA3937_RS02860 at 630.778 kb on - strand, within DDA3937_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 627,780 + DDA3937_RS02845 0.55 -1.3 627,781 - DDA3937_RS02845 0.55 +0.5 627,781 - DDA3937_RS02845 0.55 -2.3 627,832 + DDA3937_RS02845 0.60 -0.3 627,832 + DDA3937_RS02845 0.60 -0.2 627,832 + DDA3937_RS02845 0.60 -1.2 627,832 + DDA3937_RS02845 0.60 -0.1 627,833 - DDA3937_RS02845 0.60 +0.4 627,833 - DDA3937_RS02845 0.60 +1.1 627,833 - DDA3937_RS02845 0.60 -0.1 627,833 - DDA3937_RS02845 0.60 +0.5 627,833 - DDA3937_RS02845 0.60 -0.1 627,833 - DDA3937_RS02845 0.60 +1.5 627,835 + DDA3937_RS02845 0.60 -0.6 627,835 + DDA3937_RS02845 0.60 +0.6 627,835 + DDA3937_RS02845 0.60 +0.5 627,835 + DDA3937_RS02845 0.60 -1.1 627,836 - DDA3937_RS02845 0.60 +2.1 627,836 - DDA3937_RS02845 0.60 -1.1 627,842 + DDA3937_RS02845 0.61 -1.3 627,843 - DDA3937_RS02845 0.61 -1.1 627,864 + DDA3937_RS02845 0.63 +0.3 627,864 + DDA3937_RS02845 0.63 -3.4 627,865 - DDA3937_RS02845 0.63 -1.2 627,906 + DDA3937_RS02845 0.68 -0.2 627,906 + DDA3937_RS02845 0.68 +1.1 628,029 + DDA3937_RS02845 0.81 +0.0 628,029 + DDA3937_RS02845 0.81 -1.5 628,029 + DDA3937_RS02845 0.81 -0.3 628,030 - DDA3937_RS02845 0.81 -0.3 628,030 - DDA3937_RS02845 0.81 -0.3 628,055 + DDA3937_RS02845 0.83 -0.1 628,134 + +0.1 628,156 + -0.5 628,156 + -1.5 628,156 + +0.0 628,156 + -0.7 628,157 - -0.4 628,157 - +0.2 628,157 - -0.1 628,157 - +2.2 628,157 - -0.1 628,157 - +0.2 628,157 - -0.2 628,157 - -0.4 628,157 - -0.4 628,202 + +0.3 628,202 + -1.1 628,202 + -0.1 628,202 + -0.3 628,202 + -0.5 628,202 + -0.1 628,202 + +0.5 628,202 + -0.9 628,202 + -0.7 628,202 + -0.0 628,202 + -0.7 628,202 + -1.7 628,202 + -1.6 628,203 - -0.6 628,203 - -0.9 628,203 - -0.0 628,203 - +0.0 628,203 - +1.3 628,203 - -1.1 628,203 - -0.5 628,203 - -0.5 628,204 + -0.1 628,204 + -0.6 628,204 + -1.0 628,204 + +0.8 628,204 + +0.2 628,204 + -0.8 628,204 + -0.6 628,204 + -2.4 628,204 + -1.0 628,205 - +1.1 628,205 - -1.8 628,205 - -0.9 628,205 - +0.1 628,205 - -1.5 628,205 - -0.0 628,205 - +0.1 628,205 - -0.1 628,208 + -0.3 628,208 + -1.2 628,208 + -0.7 628,208 + +1.5 628,208 + -0.5 628,208 + -1.1 628,209 - -0.9 628,209 - +0.5 628,213 + -0.1 628,213 + -1.1 628,214 - +0.5 628,214 - +0.4 628,214 - +0.9 628,219 + +0.2 628,220 - +0.6 628,220 - +1.1 628,309 + -0.6 628,310 - -0.2 628,312 + -1.4 628,313 - -0.5 628,313 - -0.3 628,323 + +0.8 628,323 + -1.5 628,324 - -0.8 628,352 + -0.2 628,352 + -1.5 628,352 + -0.5 628,353 - -0.1 628,353 - -0.1 628,353 - -1.4 628,353 - -0.5 628,353 - -1.1 628,359 + -0.5 628,359 + +1.2 628,359 + -0.6 628,360 - -0.2 628,368 + -1.4 628,368 + +0.1 628,369 - +0.3 628,369 - -0.3 628,377 + -2.1 628,377 + -0.4 628,378 - +0.2 628,378 - +0.1 628,378 - -0.5 628,411 + +0.9 628,411 + +1.1 628,411 + -0.7 628,412 - +0.3 628,412 - +0.2 628,412 - +0.2 628,436 + -0.7 628,460 + -0.1 628,460 + -1.5 628,461 - -1.2 628,461 - +0.2 628,461 - -0.9 628,465 + -0.0 628,475 - -0.2 628,581 - +0.1 628,607 - +1.0 628,607 - -0.1 628,648 + -1.8 628,649 - +0.8 628,710 - -0.5 628,763 + -0.9 628,763 + -0.7 628,763 + +0.6 628,763 + -0.9 628,764 - -1.2 628,764 - -0.6 628,851 + DDA3937_RS02850 0.16 +0.2 628,851 + DDA3937_RS02850 0.16 -0.2 628,887 - DDA3937_RS02850 0.19 -0.0 629,111 - DDA3937_RS02850 0.38 +0.5 629,111 - DDA3937_RS02850 0.38 +0.5 629,111 - DDA3937_RS02850 0.38 +0.2 629,111 - DDA3937_RS02850 0.38 -0.2 629,155 + DDA3937_RS02850 0.42 -0.0 629,297 + DDA3937_RS02850 0.54 +0.7 629,297 + DDA3937_RS02850 0.54 +0.2 629,297 + DDA3937_RS02850 0.54 -0.3 629,298 - DDA3937_RS02850 0.54 +0.8 629,298 - DDA3937_RS02850 0.54 +0.5 629,312 + DDA3937_RS02850 0.55 +0.0 629,312 + DDA3937_RS02850 0.55 +0.0 629,313 - DDA3937_RS02850 0.55 +0.0 629,313 - DDA3937_RS02850 0.55 +0.4 629,313 - DDA3937_RS02850 0.55 -0.0 629,313 - DDA3937_RS02850 0.55 +0.0 629,462 + DDA3937_RS02850 0.68 +0.5 629,462 + DDA3937_RS02850 0.68 -0.5 629,463 - DDA3937_RS02850 0.68 +0.5 629,486 + DDA3937_RS02850 0.70 +1.2 629,486 + DDA3937_RS02850 0.70 -0.5 629,486 + DDA3937_RS02850 0.70 +0.1 629,486 + DDA3937_RS02850 0.70 -0.3 629,486 + DDA3937_RS02850 0.70 -0.7 629,486 + DDA3937_RS02850 0.70 -0.2 629,486 + DDA3937_RS02850 0.70 +0.7 629,486 + DDA3937_RS02850 0.70 +0.1 629,487 - DDA3937_RS02850 0.70 -3.6 629,487 - DDA3937_RS02850 0.70 -2.4 629,487 - DDA3937_RS02850 0.70 +0.0 629,487 - DDA3937_RS02850 0.70 +0.4 629,487 - DDA3937_RS02850 0.70 -1.5 629,487 - DDA3937_RS02850 0.70 -0.9 629,487 - DDA3937_RS02850 0.70 -2.1 629,487 - DDA3937_RS02850 0.70 +0.2 629,489 - DDA3937_RS02850 0.70 +0.5 629,489 - DDA3937_RS02850 0.70 +1.3 629,738 + -0.2 629,817 + +0.7 629,881 + +0.0 629,881 + -0.3 629,881 + +0.8 629,882 - +0.2 629,882 - +0.9 629,882 - -0.2 629,882 - +1.1 629,909 + -0.0 629,909 + -0.6 629,910 - +0.9 629,929 + -1.0 629,929 + -1.5 629,930 - +0.2 629,930 - +0.5 629,930 - +0.2 629,930 - +0.5 629,930 - +1.1 629,958 + -0.2 630,024 - DDA3937_RS02855 0.32 -0.6 630,140 - DDA3937_RS02855 0.71 -0.4 630,210 - -0.7 630,247 - +0.6 630,264 - +0.1 630,432 - -0.8 630,454 - +0.0 630,515 - -1.5 630,531 + +0.7 630,532 - -1.5 630,542 - -1.1 630,624 + -1.0 630,624 + -0.5 630,628 - +0.4 630,628 - -0.1 630,628 - +0.9 630,628 - +0.3 630,697 - DDA3937_RS02860 0.17 -0.3 630,777 + DDA3937_RS02860 0.26 +1.3 630,778 - DDA3937_RS02860 0.26 -1.8
Or see this region's nucleotide sequence