Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02660 and DDA3937_RS02665 are separated by 164 nucleotides DDA3937_RS02665 and DDA3937_RS02670 are separated by 2 nucleotides DDA3937_RS02670 and DDA3937_RS02675 are separated by 58 nucleotides DDA3937_RS02675 and DDA3937_RS02680 are separated by 900 nucleotides
DDA3937_RS02660: DDA3937_RS02660 - RNA-directed DNA polymerase, at 590,563 to 591,906
_RS02660
DDA3937_RS02665: DDA3937_RS02665 - type II toxin-antitoxin system toxin CcdB, at 592,071 to 592,376
_RS02665
DDA3937_RS02670: DDA3937_RS02670 - type II toxin-antitoxin system antitoxin CcdA, at 592,379 to 592,597
_RS02670
DDA3937_RS02675: DDA3937_RS02675 - hypothetical protein, at 592,656 to 593,399
_RS02675
DDA3937_RS02680: DDA3937_RS02680 - hypothetical protein, at 594,300 to 594,650
_RS02680
Position (kb) 592
593
594 Strain fitness (log2 ratio) -2
-1
0
1 at 591.751 kb on - strand, within DDA3937_RS02660 at 591.929 kb on + strand at 591.935 kb on - strand at 591.962 kb on - strand at 591.962 kb on - strand at 592.005 kb on + strand at 592.005 kb on + strand at 592.040 kb on + strand at 592.041 kb on - strand at 592.140 kb on + strand, within DDA3937_RS02665 at 592.236 kb on - strand, within DDA3937_RS02665 at 592.557 kb on + strand, within DDA3937_RS02670 at 592.561 kb on + strand, within DDA3937_RS02670 at 592.562 kb on - strand at 592.620 kb on + strand at 592.629 kb on + strand at 592.632 kb on - strand at 592.633 kb on + strand at 592.634 kb on - strand at 592.658 kb on - strand at 592.697 kb on + strand at 592.697 kb on + strand at 592.697 kb on + strand at 592.698 kb on - strand at 592.698 kb on - strand at 592.698 kb on - strand at 592.699 kb on + strand at 592.700 kb on - strand at 592.763 kb on - strand, within DDA3937_RS02675 at 592.763 kb on - strand, within DDA3937_RS02675 at 592.763 kb on - strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.823 kb on - strand, within DDA3937_RS02675 at 592.823 kb on - strand, within DDA3937_RS02675 at 592.831 kb on + strand, within DDA3937_RS02675 at 592.831 kb on + strand, within DDA3937_RS02675 at 592.832 kb on - strand, within DDA3937_RS02675 at 592.832 kb on - strand, within DDA3937_RS02675 at 592.875 kb on - strand, within DDA3937_RS02675 at 593.064 kb on - strand, within DDA3937_RS02675 at 593.155 kb on - strand, within DDA3937_RS02675 at 593.250 kb on + strand, within DDA3937_RS02675 at 593.257 kb on + strand, within DDA3937_RS02675 at 593.258 kb on - strand, within DDA3937_RS02675 at 593.276 kb on + strand, within DDA3937_RS02675 at 593.276 kb on + strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.438 kb on + strand at 593.438 kb on + strand at 593.439 kb on - strand at 593.554 kb on - strand at 593.786 kb on + strand at 593.822 kb on + strand at 593.822 kb on + strand at 593.823 kb on - strand at 593.859 kb on - strand at 594.215 kb on - strand at 594.238 kb on + strand at 594.366 kb on + strand, within DDA3937_RS02680 at 594.366 kb on + strand, within DDA3937_RS02680 at 594.366 kb on + strand, within DDA3937_RS02680 at 594.367 kb on - strand, within DDA3937_RS02680
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 591,751 - DDA3937_RS02660 0.88 -0.1 591,929 + +1.0 591,935 - +0.1 591,962 - -0.5 591,962 - +1.5 592,005 + -1.0 592,005 + -0.5 592,040 + -0.8 592,041 - -0.2 592,140 + DDA3937_RS02665 0.23 -0.3 592,236 - DDA3937_RS02665 0.54 -0.0 592,557 + DDA3937_RS02670 0.81 -0.5 592,561 + DDA3937_RS02670 0.83 -0.5 592,562 - -0.8 592,620 + +0.9 592,629 + -0.8 592,632 - -1.2 592,633 + -1.3 592,634 - +0.1 592,658 - -0.3 592,697 + -0.0 592,697 + +0.2 592,697 + -0.0 592,698 - +0.0 592,698 - +0.9 592,698 - -0.5 592,699 + +1.0 592,700 - +0.2 592,763 - DDA3937_RS02675 0.14 +0.5 592,763 - DDA3937_RS02675 0.14 +0.2 592,763 - DDA3937_RS02675 0.14 +0.8 592,822 + DDA3937_RS02675 0.22 +1.5 592,822 + DDA3937_RS02675 0.22 +0.1 592,822 + DDA3937_RS02675 0.22 -0.4 592,822 + DDA3937_RS02675 0.22 -0.7 592,823 - DDA3937_RS02675 0.22 +0.8 592,823 - DDA3937_RS02675 0.22 -2.5 592,831 + DDA3937_RS02675 0.24 -0.0 592,831 + DDA3937_RS02675 0.24 -0.6 592,832 - DDA3937_RS02675 0.24 +0.3 592,832 - DDA3937_RS02675 0.24 -1.3 592,875 - DDA3937_RS02675 0.29 -0.9 593,064 - DDA3937_RS02675 0.55 +1.4 593,155 - DDA3937_RS02675 0.67 +0.5 593,250 + DDA3937_RS02675 0.80 +0.4 593,257 + DDA3937_RS02675 0.81 -0.3 593,258 - DDA3937_RS02675 0.81 +0.1 593,276 + DDA3937_RS02675 0.83 +0.7 593,276 + DDA3937_RS02675 0.83 -0.8 593,315 - DDA3937_RS02675 0.89 +0.5 593,315 - DDA3937_RS02675 0.89 +0.9 593,315 - DDA3937_RS02675 0.89 -0.5 593,438 + -0.2 593,438 + -0.1 593,439 - +0.1 593,554 - +1.5 593,786 + -0.9 593,822 + +0.3 593,822 + -0.4 593,823 - -0.2 593,859 - -0.3 594,215 - -0.6 594,238 + -0.5 594,366 + DDA3937_RS02680 0.19 -0.2 594,366 + DDA3937_RS02680 0.19 -1.0 594,366 + DDA3937_RS02680 0.19 -1.1 594,367 - DDA3937_RS02680 0.19 +1.3
Or see this region's nucleotide sequence