Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02600

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02590 and DDA3937_RS02595 overlap by 8 nucleotidesDDA3937_RS02595 and DDA3937_RS02600 are separated by 9 nucleotidesDDA3937_RS02600 and DDA3937_RS02605 are separated by 1 nucleotides DDA3937_RS02590: DDA3937_RS02590 - hypothetical protein, at 574,365 to 575,747 _RS02590 DDA3937_RS02595: DDA3937_RS02595 - glycosyltransferase, at 575,740 to 576,729 _RS02595 DDA3937_RS02600: DDA3937_RS02600 - glycosyltransferase family 4 protein, at 576,739 to 577,950 _RS02600 DDA3937_RS02605: DDA3937_RS02605 - glycosyltransferase family 4 protein, at 577,952 to 579,067 _RS02605 Position (kb) 576 577 578Strain fitness (log2 ratio) -2 -1 0 1at 575.740 kb on - strandat 575.748 kb on + strandat 575.772 kb on + strandat 575.773 kb on - strandat 575.817 kb on + strandat 575.818 kb on - strandat 575.818 kb on - strandat 575.829 kb on + strandat 575.870 kb on + strand, within DDA3937_RS02595at 575.871 kb on - strand, within DDA3937_RS02595at 575.871 kb on - strand, within DDA3937_RS02595at 575.871 kb on - strand, within DDA3937_RS02595at 575.974 kb on + strand, within DDA3937_RS02595at 575.975 kb on - strand, within DDA3937_RS02595at 575.981 kb on - strand, within DDA3937_RS02595at 575.995 kb on + strand, within DDA3937_RS02595at 575.996 kb on - strand, within DDA3937_RS02595at 575.996 kb on - strand, within DDA3937_RS02595at 576.040 kb on - strand, within DDA3937_RS02595at 576.124 kb on + strand, within DDA3937_RS02595at 576.125 kb on - strand, within DDA3937_RS02595at 576.132 kb on + strand, within DDA3937_RS02595at 576.132 kb on + strand, within DDA3937_RS02595at 576.132 kb on + strand, within DDA3937_RS02595at 576.163 kb on + strand, within DDA3937_RS02595at 576.204 kb on - strand, within DDA3937_RS02595at 576.204 kb on - strand, within DDA3937_RS02595at 576.205 kb on + strand, within DDA3937_RS02595at 576.231 kb on - strand, within DDA3937_RS02595at 576.236 kb on - strand, within DDA3937_RS02595at 576.306 kb on + strand, within DDA3937_RS02595at 576.307 kb on - strand, within DDA3937_RS02595at 576.332 kb on - strand, within DDA3937_RS02595at 576.350 kb on - strand, within DDA3937_RS02595at 576.365 kb on - strand, within DDA3937_RS02595at 576.365 kb on - strand, within DDA3937_RS02595at 576.367 kb on - strand, within DDA3937_RS02595at 576.445 kb on + strand, within DDA3937_RS02595at 576.445 kb on + strand, within DDA3937_RS02595at 576.522 kb on - strand, within DDA3937_RS02595at 576.584 kb on + strand, within DDA3937_RS02595at 576.708 kb on + strandat 576.717 kb on + strandat 576.718 kb on - strandat 576.718 kb on - strandat 576.747 kb on - strandat 576.770 kb on - strandat 576.814 kb on - strandat 576.814 kb on - strandat 576.883 kb on + strand, within DDA3937_RS02600at 576.945 kb on + strandat 576.946 kb on - strand, within DDA3937_RS02600at 576.969 kb on + strand, within DDA3937_RS02600at 576.970 kb on - strand, within DDA3937_RS02600at 576.984 kb on + strand, within DDA3937_RS02600at 576.984 kb on + strand, within DDA3937_RS02600at 577.041 kb on + strand, within DDA3937_RS02600at 577.045 kb on + strand, within DDA3937_RS02600at 577.120 kb on + strand, within DDA3937_RS02600at 577.121 kb on - strand, within DDA3937_RS02600at 577.121 kb on - strand, within DDA3937_RS02600at 577.121 kb on - strand, within DDA3937_RS02600at 577.129 kb on - strand, within DDA3937_RS02600at 577.129 kb on - strand, within DDA3937_RS02600at 577.129 kb on - strand, within DDA3937_RS02600at 577.129 kb on - strand, within DDA3937_RS02600at 577.142 kb on - strand, within DDA3937_RS02600at 577.197 kb on + strand, within DDA3937_RS02600at 577.197 kb on + strand, within DDA3937_RS02600at 577.207 kb on - strand, within DDA3937_RS02600at 577.211 kb on - strand, within DDA3937_RS02600at 577.341 kb on - strand, within DDA3937_RS02600at 577.474 kb on - strand, within DDA3937_RS02600at 577.474 kb on - strand, within DDA3937_RS02600at 577.543 kb on + strand, within DDA3937_RS02600at 577.543 kb on + strand, within DDA3937_RS02600at 577.588 kb on + strand, within DDA3937_RS02600at 577.591 kb on - strand, within DDA3937_RS02600at 577.591 kb on - strand, within DDA3937_RS02600at 577.657 kb on + strand, within DDA3937_RS02600at 577.657 kb on + strand, within DDA3937_RS02600at 577.658 kb on - strand, within DDA3937_RS02600at 577.661 kb on - strand, within DDA3937_RS02600at 577.726 kb on - strand, within DDA3937_RS02600at 577.734 kb on + strand, within DDA3937_RS02600at 577.736 kb on + strand, within DDA3937_RS02600at 577.737 kb on - strand, within DDA3937_RS02600at 577.760 kb on + strand, within DDA3937_RS02600at 577.761 kb on - strand, within DDA3937_RS02600at 577.893 kb on - strandat 577.952 kb on - strandat 578.033 kb on + strandat 578.090 kb on + strand, within DDA3937_RS02605at 578.091 kb on - strand, within DDA3937_RS02605at 578.095 kb on + strand, within DDA3937_RS02605at 578.096 kb on - strandat 578.096 kb on - strand, within DDA3937_RS02605at 578.163 kb on + strand, within DDA3937_RS02605at 578.172 kb on + strand, within DDA3937_RS02605at 578.173 kb on - strand, within DDA3937_RS02605at 578.240 kb on - strand, within DDA3937_RS02605at 578.315 kb on + strand, within DDA3937_RS02605at 578.316 kb on - strand, within DDA3937_RS02605at 578.316 kb on - strand, within DDA3937_RS02605at 578.355 kb on + strandat 578.355 kb on + strand, within DDA3937_RS02605at 578.399 kb on + strand, within DDA3937_RS02605at 578.417 kb on - strand, within DDA3937_RS02605at 578.426 kb on - strand, within DDA3937_RS02605at 578.441 kb on + strand, within DDA3937_RS02605at 578.442 kb on - strand, within DDA3937_RS02605at 578.464 kb on + strand, within DDA3937_RS02605at 578.465 kb on - strand, within DDA3937_RS02605at 578.468 kb on + strand, within DDA3937_RS02605at 578.468 kb on + strand, within DDA3937_RS02605at 578.469 kb on - strand, within DDA3937_RS02605at 578.469 kb on - strand, within DDA3937_RS02605at 578.469 kb on - strand, within DDA3937_RS02605at 578.497 kb on - strand, within DDA3937_RS02605at 578.509 kb on + strand, within DDA3937_RS02605at 578.552 kb on + strand, within DDA3937_RS02605at 578.552 kb on + strand, within DDA3937_RS02605at 578.603 kb on - strand, within DDA3937_RS02605at 578.675 kb on + strand, within DDA3937_RS02605at 578.676 kb on - strand, within DDA3937_RS02605at 578.676 kb on - strand, within DDA3937_RS02605at 578.677 kb on + strand, within DDA3937_RS02605at 578.677 kb on + strand, within DDA3937_RS02605at 578.677 kb on + strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.721 kb on + strand, within DDA3937_RS02605at 578.721 kb on + strand, within DDA3937_RS02605at 578.721 kb on + strand, within DDA3937_RS02605at 578.773 kb on + strand, within DDA3937_RS02605at 578.795 kb on + strand, within DDA3937_RS02605at 578.914 kb on - strand, within DDA3937_RS02605

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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575,740 - +0.2
575,748 + -1.6
575,772 + -0.2
575,773 - +0.6
575,817 + -0.3
575,818 - +0.1
575,818 - -0.4
575,829 + +0.0
575,870 + DDA3937_RS02595 0.13 -0.3
575,871 - DDA3937_RS02595 0.13 -1.0
575,871 - DDA3937_RS02595 0.13 +0.3
575,871 - DDA3937_RS02595 0.13 -1.3
575,974 + DDA3937_RS02595 0.24 -0.6
575,975 - DDA3937_RS02595 0.24 -0.2
575,981 - DDA3937_RS02595 0.24 +0.2
575,995 + DDA3937_RS02595 0.26 +0.7
575,996 - DDA3937_RS02595 0.26 +0.3
575,996 - DDA3937_RS02595 0.26 +1.3
576,040 - DDA3937_RS02595 0.30 -0.9
576,124 + DDA3937_RS02595 0.39 +0.2
576,125 - DDA3937_RS02595 0.39 -0.5
576,132 + DDA3937_RS02595 0.40 -0.8
576,132 + DDA3937_RS02595 0.40 -1.3
576,132 + DDA3937_RS02595 0.40 -0.3
576,163 + DDA3937_RS02595 0.43 +0.1
576,204 - DDA3937_RS02595 0.47 +0.3
576,204 - DDA3937_RS02595 0.47 -0.6
576,205 + DDA3937_RS02595 0.47 -0.1
576,231 - DDA3937_RS02595 0.50 -0.3
576,236 - DDA3937_RS02595 0.50 -0.4
576,306 + DDA3937_RS02595 0.57 +0.0
576,307 - DDA3937_RS02595 0.57 -0.2
576,332 - DDA3937_RS02595 0.60 -0.2
576,350 - DDA3937_RS02595 0.62 -1.8
576,365 - DDA3937_RS02595 0.63 -0.9
576,365 - DDA3937_RS02595 0.63 -0.5
576,367 - DDA3937_RS02595 0.63 +0.3
576,445 + DDA3937_RS02595 0.71 +1.4
576,445 + DDA3937_RS02595 0.71 +0.4
576,522 - DDA3937_RS02595 0.79 -0.7
576,584 + DDA3937_RS02595 0.85 -1.1
576,708 + -0.5
576,717 + +1.0
576,718 - +0.4
576,718 - +0.8
576,747 - +0.3
576,770 - -0.3
576,814 - +1.2
576,814 - -1.4
576,883 + DDA3937_RS02600 0.12 -0.2
576,945 + +0.6
576,946 - DDA3937_RS02600 0.17 -0.7
576,969 + DDA3937_RS02600 0.19 -1.0
576,970 - DDA3937_RS02600 0.19 -0.3
576,984 + DDA3937_RS02600 0.20 -0.2
576,984 + DDA3937_RS02600 0.20 +0.3
577,041 + DDA3937_RS02600 0.25 -1.8
577,045 + DDA3937_RS02600 0.25 -0.5
577,120 + DDA3937_RS02600 0.31 -0.6
577,121 - DDA3937_RS02600 0.32 +0.1
577,121 - DDA3937_RS02600 0.32 +0.1
577,121 - DDA3937_RS02600 0.32 -0.4
577,129 - DDA3937_RS02600 0.32 -0.1
577,129 - DDA3937_RS02600 0.32 -1.3
577,129 - DDA3937_RS02600 0.32 -1.3
577,129 - DDA3937_RS02600 0.32 +1.0
577,142 - DDA3937_RS02600 0.33 -0.6
577,197 + DDA3937_RS02600 0.38 -0.0
577,197 + DDA3937_RS02600 0.38 -0.6
577,207 - DDA3937_RS02600 0.39 -1.0
577,211 - DDA3937_RS02600 0.39 -0.3
577,341 - DDA3937_RS02600 0.50 -0.5
577,474 - DDA3937_RS02600 0.61 -0.1
577,474 - DDA3937_RS02600 0.61 -0.3
577,543 + DDA3937_RS02600 0.66 +0.4
577,543 + DDA3937_RS02600 0.66 -0.2
577,588 + DDA3937_RS02600 0.70 +0.7
577,591 - DDA3937_RS02600 0.70 +1.1
577,591 - DDA3937_RS02600 0.70 -0.9
577,657 + DDA3937_RS02600 0.76 -1.7
577,657 + DDA3937_RS02600 0.76 -0.8
577,658 - DDA3937_RS02600 0.76 +0.3
577,661 - DDA3937_RS02600 0.76 -0.1
577,726 - DDA3937_RS02600 0.81 -0.8
577,734 + DDA3937_RS02600 0.82 -1.0
577,736 + DDA3937_RS02600 0.82 -1.1
577,737 - DDA3937_RS02600 0.82 -1.5
577,760 + DDA3937_RS02600 0.84 +0.1
577,761 - DDA3937_RS02600 0.84 -0.3
577,893 - +0.1
577,952 - -0.4
578,033 + +0.2
578,090 + DDA3937_RS02605 0.12 +0.9
578,091 - DDA3937_RS02605 0.12 -0.6
578,095 + DDA3937_RS02605 0.13 +0.4
578,096 - -1.0
578,096 - DDA3937_RS02605 0.13 -2.0
578,163 + DDA3937_RS02605 0.19 -1.4
578,172 + DDA3937_RS02605 0.20 -0.1
578,173 - DDA3937_RS02605 0.20 -1.8
578,240 - DDA3937_RS02605 0.26 +0.5
578,315 + DDA3937_RS02605 0.33 -0.8
578,316 - DDA3937_RS02605 0.33 -0.2
578,316 - DDA3937_RS02605 0.33 +0.2
578,355 + +0.6
578,355 + DDA3937_RS02605 0.36 +0.1
578,399 + DDA3937_RS02605 0.40 +0.0
578,417 - DDA3937_RS02605 0.42 +1.4
578,426 - DDA3937_RS02605 0.42 +0.2
578,441 + DDA3937_RS02605 0.44 -0.3
578,442 - DDA3937_RS02605 0.44 +0.0
578,464 + DDA3937_RS02605 0.46 +0.5
578,465 - DDA3937_RS02605 0.46 -0.0
578,468 + DDA3937_RS02605 0.46 -1.2
578,468 + DDA3937_RS02605 0.46 -1.8
578,469 - DDA3937_RS02605 0.46 -0.0
578,469 - DDA3937_RS02605 0.46 +0.4
578,469 - DDA3937_RS02605 0.46 +0.3
578,497 - DDA3937_RS02605 0.49 +0.2
578,509 + DDA3937_RS02605 0.50 +0.4
578,552 + DDA3937_RS02605 0.54 -0.1
578,552 + DDA3937_RS02605 0.54 -0.3
578,603 - DDA3937_RS02605 0.58 +0.6
578,675 + DDA3937_RS02605 0.65 +1.3
578,676 - DDA3937_RS02605 0.65 -0.1
578,676 - DDA3937_RS02605 0.65 -1.0
578,677 + DDA3937_RS02605 0.65 -0.8
578,677 + DDA3937_RS02605 0.65 +0.3
578,677 + DDA3937_RS02605 0.65 +1.1
578,678 - DDA3937_RS02605 0.65 -0.0
578,678 - DDA3937_RS02605 0.65 -0.1
578,678 - DDA3937_RS02605 0.65 +0.1
578,678 - DDA3937_RS02605 0.65 +0.4
578,678 - DDA3937_RS02605 0.65 +1.0
578,721 + DDA3937_RS02605 0.69 -0.8
578,721 + DDA3937_RS02605 0.69 -0.7
578,721 + DDA3937_RS02605 0.69 +0.5
578,773 + DDA3937_RS02605 0.74 -0.2
578,795 + DDA3937_RS02605 0.76 +0.6
578,914 - DDA3937_RS02605 0.86 -0.6

Or see this region's nucleotide sequence