Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02590 and DDA3937_RS02595 overlap by 8 nucleotides DDA3937_RS02595 and DDA3937_RS02600 are separated by 9 nucleotides
DDA3937_RS02590: DDA3937_RS02590 - hypothetical protein, at 574,365 to 575,747
_RS02590
DDA3937_RS02595: DDA3937_RS02595 - glycosyltransferase, at 575,740 to 576,729
_RS02595
DDA3937_RS02600: DDA3937_RS02600 - glycosyltransferase family 4 protein, at 576,739 to 577,950
_RS02600
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 574.746 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.771 kb on - strand, within DDA3937_RS02590 at 574.878 kb on - strand, within DDA3937_RS02590 at 574.910 kb on + strand, within DDA3937_RS02590 at 574.911 kb on - strand, within DDA3937_RS02590 at 574.935 kb on - strand, within DDA3937_RS02590 at 575.070 kb on + strand, within DDA3937_RS02590 at 575.073 kb on - strand, within DDA3937_RS02590 at 575.074 kb on + strand, within DDA3937_RS02590 at 575.075 kb on - strand, within DDA3937_RS02590 at 575.092 kb on + strand, within DDA3937_RS02590 at 575.256 kb on + strand, within DDA3937_RS02590 at 575.259 kb on - strand at 575.288 kb on + strand, within DDA3937_RS02590 at 575.296 kb on + strand, within DDA3937_RS02590 at 575.360 kb on - strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.413 kb on - strand, within DDA3937_RS02590 at 575.440 kb on + strand, within DDA3937_RS02590 at 575.452 kb on + strand, within DDA3937_RS02590 at 575.499 kb on - strand at 575.502 kb on + strand, within DDA3937_RS02590 at 575.502 kb on + strand, within DDA3937_RS02590 at 575.551 kb on + strand at 575.676 kb on + strand at 575.676 kb on + strand at 575.677 kb on - strand at 575.677 kb on - strand at 575.725 kb on - strand at 575.740 kb on - strand at 575.748 kb on + strand at 575.772 kb on + strand at 575.773 kb on - strand at 575.817 kb on + strand at 575.818 kb on - strand at 575.818 kb on - strand at 575.829 kb on + strand at 575.870 kb on + strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.974 kb on + strand, within DDA3937_RS02595 at 575.975 kb on - strand, within DDA3937_RS02595 at 575.981 kb on - strand, within DDA3937_RS02595 at 575.995 kb on + strand, within DDA3937_RS02595 at 575.996 kb on - strand, within DDA3937_RS02595 at 575.996 kb on - strand, within DDA3937_RS02595 at 576.040 kb on - strand, within DDA3937_RS02595 at 576.124 kb on + strand, within DDA3937_RS02595 at 576.125 kb on - strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.163 kb on + strand, within DDA3937_RS02595 at 576.204 kb on - strand, within DDA3937_RS02595 at 576.204 kb on - strand, within DDA3937_RS02595 at 576.205 kb on + strand, within DDA3937_RS02595 at 576.231 kb on - strand, within DDA3937_RS02595 at 576.236 kb on - strand, within DDA3937_RS02595 at 576.306 kb on + strand, within DDA3937_RS02595 at 576.307 kb on - strand, within DDA3937_RS02595 at 576.332 kb on - strand, within DDA3937_RS02595 at 576.350 kb on - strand, within DDA3937_RS02595 at 576.365 kb on - strand, within DDA3937_RS02595 at 576.365 kb on - strand, within DDA3937_RS02595 at 576.367 kb on - strand, within DDA3937_RS02595 at 576.445 kb on + strand, within DDA3937_RS02595 at 576.445 kb on + strand, within DDA3937_RS02595 at 576.522 kb on - strand, within DDA3937_RS02595 at 576.584 kb on + strand, within DDA3937_RS02595 at 576.708 kb on + strand at 576.717 kb on + strand at 576.718 kb on - strand at 576.718 kb on - strand at 576.747 kb on - strand at 576.770 kb on - strand at 576.814 kb on - strand at 576.814 kb on - strand at 576.883 kb on + strand, within DDA3937_RS02600 at 576.945 kb on + strand at 576.946 kb on - strand, within DDA3937_RS02600 at 576.969 kb on + strand, within DDA3937_RS02600 at 576.970 kb on - strand, within DDA3937_RS02600 at 576.984 kb on + strand, within DDA3937_RS02600 at 576.984 kb on + strand, within DDA3937_RS02600 at 577.041 kb on + strand, within DDA3937_RS02600 at 577.045 kb on + strand, within DDA3937_RS02600 at 577.120 kb on + strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.142 kb on - strand, within DDA3937_RS02600 at 577.197 kb on + strand, within DDA3937_RS02600 at 577.197 kb on + strand, within DDA3937_RS02600 at 577.207 kb on - strand, within DDA3937_RS02600 at 577.211 kb on - strand, within DDA3937_RS02600 at 577.341 kb on - strand, within DDA3937_RS02600 at 577.474 kb on - strand, within DDA3937_RS02600 at 577.474 kb on - strand, within DDA3937_RS02600 at 577.543 kb on + strand, within DDA3937_RS02600 at 577.543 kb on + strand, within DDA3937_RS02600 at 577.588 kb on + strand, within DDA3937_RS02600 at 577.591 kb on - strand, within DDA3937_RS02600 at 577.591 kb on - strand, within DDA3937_RS02600 at 577.657 kb on + strand, within DDA3937_RS02600 at 577.657 kb on + strand, within DDA3937_RS02600 at 577.658 kb on - strand, within DDA3937_RS02600 at 577.661 kb on - strand, within DDA3937_RS02600 at 577.726 kb on - strand, within DDA3937_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 574,746 + DDA3937_RS02590 0.28 -0.4 574,770 + DDA3937_RS02590 0.29 +0.7 574,770 + DDA3937_RS02590 0.29 -0.6 574,771 - DDA3937_RS02590 0.29 -0.6 574,878 - DDA3937_RS02590 0.37 -0.7 574,910 + DDA3937_RS02590 0.39 +0.3 574,911 - DDA3937_RS02590 0.39 -1.5 574,935 - DDA3937_RS02590 0.41 +0.2 575,070 + DDA3937_RS02590 0.51 -0.2 575,073 - DDA3937_RS02590 0.51 +0.4 575,074 + DDA3937_RS02590 0.51 -0.1 575,075 - DDA3937_RS02590 0.51 +0.1 575,092 + DDA3937_RS02590 0.53 +0.6 575,256 + DDA3937_RS02590 0.64 +0.3 575,259 - +1.1 575,288 + DDA3937_RS02590 0.67 +0.0 575,296 + DDA3937_RS02590 0.67 +1.0 575,360 - DDA3937_RS02590 0.72 +0.2 575,412 + DDA3937_RS02590 0.76 +0.4 575,412 + DDA3937_RS02590 0.76 -1.7 575,412 + DDA3937_RS02590 0.76 +0.6 575,413 - DDA3937_RS02590 0.76 -0.1 575,440 + DDA3937_RS02590 0.78 -0.3 575,452 + DDA3937_RS02590 0.79 -0.5 575,499 - -0.4 575,502 + DDA3937_RS02590 0.82 -0.1 575,502 + DDA3937_RS02590 0.82 +1.2 575,551 + +1.9 575,676 + -1.3 575,676 + +0.6 575,677 - -0.0 575,677 - -0.7 575,725 - -2.8 575,740 - +0.2 575,748 + -1.6 575,772 + -0.2 575,773 - +0.6 575,817 + -0.3 575,818 - +0.1 575,818 - -0.4 575,829 + +0.0 575,870 + DDA3937_RS02595 0.13 -0.3 575,871 - DDA3937_RS02595 0.13 -1.0 575,871 - DDA3937_RS02595 0.13 +0.3 575,871 - DDA3937_RS02595 0.13 -1.3 575,974 + DDA3937_RS02595 0.24 -0.6 575,975 - DDA3937_RS02595 0.24 -0.2 575,981 - DDA3937_RS02595 0.24 +0.2 575,995 + DDA3937_RS02595 0.26 +0.7 575,996 - DDA3937_RS02595 0.26 +0.3 575,996 - DDA3937_RS02595 0.26 +1.3 576,040 - DDA3937_RS02595 0.30 -0.9 576,124 + DDA3937_RS02595 0.39 +0.2 576,125 - DDA3937_RS02595 0.39 -0.5 576,132 + DDA3937_RS02595 0.40 -0.8 576,132 + DDA3937_RS02595 0.40 -1.3 576,132 + DDA3937_RS02595 0.40 -0.3 576,163 + DDA3937_RS02595 0.43 +0.1 576,204 - DDA3937_RS02595 0.47 +0.3 576,204 - DDA3937_RS02595 0.47 -0.6 576,205 + DDA3937_RS02595 0.47 -0.1 576,231 - DDA3937_RS02595 0.50 -0.3 576,236 - DDA3937_RS02595 0.50 -0.4 576,306 + DDA3937_RS02595 0.57 +0.0 576,307 - DDA3937_RS02595 0.57 -0.2 576,332 - DDA3937_RS02595 0.60 -0.2 576,350 - DDA3937_RS02595 0.62 -1.8 576,365 - DDA3937_RS02595 0.63 -0.9 576,365 - DDA3937_RS02595 0.63 -0.5 576,367 - DDA3937_RS02595 0.63 +0.3 576,445 + DDA3937_RS02595 0.71 +1.4 576,445 + DDA3937_RS02595 0.71 +0.4 576,522 - DDA3937_RS02595 0.79 -0.7 576,584 + DDA3937_RS02595 0.85 -1.1 576,708 + -0.5 576,717 + +1.0 576,718 - +0.4 576,718 - +0.8 576,747 - +0.3 576,770 - -0.3 576,814 - +1.2 576,814 - -1.4 576,883 + DDA3937_RS02600 0.12 -0.2 576,945 + +0.6 576,946 - DDA3937_RS02600 0.17 -0.7 576,969 + DDA3937_RS02600 0.19 -1.0 576,970 - DDA3937_RS02600 0.19 -0.3 576,984 + DDA3937_RS02600 0.20 -0.2 576,984 + DDA3937_RS02600 0.20 +0.3 577,041 + DDA3937_RS02600 0.25 -1.8 577,045 + DDA3937_RS02600 0.25 -0.5 577,120 + DDA3937_RS02600 0.31 -0.6 577,121 - DDA3937_RS02600 0.32 +0.1 577,121 - DDA3937_RS02600 0.32 +0.1 577,121 - DDA3937_RS02600 0.32 -0.4 577,129 - DDA3937_RS02600 0.32 -0.1 577,129 - DDA3937_RS02600 0.32 -1.3 577,129 - DDA3937_RS02600 0.32 -1.3 577,129 - DDA3937_RS02600 0.32 +1.0 577,142 - DDA3937_RS02600 0.33 -0.6 577,197 + DDA3937_RS02600 0.38 -0.0 577,197 + DDA3937_RS02600 0.38 -0.6 577,207 - DDA3937_RS02600 0.39 -1.0 577,211 - DDA3937_RS02600 0.39 -0.3 577,341 - DDA3937_RS02600 0.50 -0.5 577,474 - DDA3937_RS02600 0.61 -0.1 577,474 - DDA3937_RS02600 0.61 -0.3 577,543 + DDA3937_RS02600 0.66 +0.4 577,543 + DDA3937_RS02600 0.66 -0.2 577,588 + DDA3937_RS02600 0.70 +0.7 577,591 - DDA3937_RS02600 0.70 +1.1 577,591 - DDA3937_RS02600 0.70 -0.9 577,657 + DDA3937_RS02600 0.76 -1.7 577,657 + DDA3937_RS02600 0.76 -0.8 577,658 - DDA3937_RS02600 0.76 +0.3 577,661 - DDA3937_RS02600 0.76 -0.1 577,726 - DDA3937_RS02600 0.81 -0.8
Or see this region's nucleotide sequence