Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02445 and DDA3937_RS02450 are separated by 339 nucleotides DDA3937_RS02450 and DDA3937_RS21810 are separated by 160 nucleotides DDA3937_RS21810 and DDA3937_RS02455 are separated by 99 nucleotides DDA3937_RS02455 and DDA3937_RS02460 are separated by 70 nucleotides
DDA3937_RS02445: DDA3937_RS02445 - peptide chain release factor 3, at 541,145 to 542,734
_RS02445
DDA3937_RS02450: DDA3937_RS02450 - molecular chaperone OsmY, at 543,074 to 543,730
_RS02450
DDA3937_RS21810: DDA3937_RS21810 - DUF1328 domain-containing protein, at 543,891 to 544,052
_RS21810
DDA3937_RS02455: DDA3937_RS02455 - stress response protein, at 544,152 to 544,340
_RS02455
DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253
_RS02460
Position (kb) 543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 542.651 kb on + strand at 542.652 kb on - strand at 542.652 kb on - strand at 542.798 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.896 kb on + strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.902 kb on + strand at 542.930 kb on + strand at 542.935 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.945 kb on + strand at 542.946 kb on - strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.961 kb on - strand at 542.961 kb on - strand at 542.961 kb on - strand at 543.069 kb on + strand at 543.221 kb on - strand, within DDA3937_RS02450 at 543.250 kb on + strand, within DDA3937_RS02450 at 543.270 kb on + strand, within DDA3937_RS02450 at 543.271 kb on - strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.474 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.597 kb on + strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.733 kb on + strand at 543.733 kb on + strand at 543.733 kb on + strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.771 kb on + strand at 543.824 kb on + strand at 543.824 kb on + strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.846 kb on + strand at 543.908 kb on + strand, within DDA3937_RS21810 at 543.908 kb on + strand, within DDA3937_RS21810 at 543.909 kb on - strand, within DDA3937_RS21810 at 544.007 kb on + strand, within DDA3937_RS21810 at 544.007 kb on + strand, within DDA3937_RS21810 at 544.008 kb on - strand, within DDA3937_RS21810 at 544.030 kb on + strand, within DDA3937_RS21810 at 544.031 kb on - strand, within DDA3937_RS21810 at 544.050 kb on + strand at 544.050 kb on + strand at 544.051 kb on - strand at 544.073 kb on + strand at 544.073 kb on + strand at 544.073 kb on + strand at 544.085 kb on - strand at 544.085 kb on - strand at 544.287 kb on + strand, within DDA3937_RS02455 at 544.287 kb on + strand, within DDA3937_RS02455 at 544.287 kb on + strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.363 kb on + strand at 544.364 kb on - strand at 544.367 kb on + strand at 544.368 kb on - strand at 544.624 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.652 kb on - strand, within DDA3937_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 542,651 + -0.2 542,652 - -1.0 542,652 - -1.0 542,798 + +0.1 542,892 + +0.6 542,892 + -0.7 542,892 + +0.0 542,892 + +0.2 542,892 + +0.1 542,892 + +1.0 542,892 + +0.3 542,892 + -0.0 542,892 + +0.1 542,892 + +0.3 542,892 + -0.3 542,892 + +0.1 542,893 - -0.0 542,893 - +0.5 542,893 - -0.5 542,893 - -0.1 542,896 + -0.8 542,897 - +0.9 542,897 - -1.7 542,897 - -0.0 542,897 - +1.7 542,897 - -1.3 542,897 - -0.4 542,898 + -0.1 542,898 + +0.2 542,898 + +0.3 542,899 - +0.3 542,899 - -0.1 542,899 - +0.2 542,902 + +1.2 542,930 + +2.2 542,935 - +0.8 542,941 - -1.2 542,941 - +1.7 542,941 - -1.7 542,945 + -0.0 542,946 - -0.8 542,960 + -0.5 542,960 + -0.4 542,960 + -1.4 542,960 + -0.1 542,961 - -1.7 542,961 - -0.5 542,961 - +0.2 543,069 + +0.6 543,221 - DDA3937_RS02450 0.22 -0.0 543,250 + DDA3937_RS02450 0.27 -1.0 543,270 + DDA3937_RS02450 0.30 -0.3 543,271 - DDA3937_RS02450 0.30 -0.4 543,275 + DDA3937_RS02450 0.31 -0.1 543,275 + DDA3937_RS02450 0.31 +0.3 543,276 - DDA3937_RS02450 0.31 -0.4 543,276 - DDA3937_RS02450 0.31 -2.0 543,276 - DDA3937_RS02450 0.31 -2.2 543,474 + DDA3937_RS02450 0.61 -0.3 543,498 + DDA3937_RS02450 0.65 -0.3 543,498 + DDA3937_RS02450 0.65 -0.4 543,498 + DDA3937_RS02450 0.65 -1.2 543,515 + DDA3937_RS02450 0.67 -0.0 543,515 + DDA3937_RS02450 0.67 -1.7 543,515 + DDA3937_RS02450 0.67 +0.2 543,515 + DDA3937_RS02450 0.67 -0.8 543,516 - DDA3937_RS02450 0.67 -0.3 543,516 - DDA3937_RS02450 0.67 -0.4 543,516 - DDA3937_RS02450 0.67 +0.8 543,516 - DDA3937_RS02450 0.67 -0.9 543,516 - DDA3937_RS02450 0.67 +0.7 543,597 + DDA3937_RS02450 0.80 +0.4 543,598 - DDA3937_RS02450 0.80 -1.2 543,598 - DDA3937_RS02450 0.80 -0.6 543,598 - DDA3937_RS02450 0.80 +0.4 543,733 + +0.6 543,733 + +1.2 543,733 + +0.2 543,734 - +0.2 543,734 - -0.2 543,734 - -0.4 543,771 + -0.7 543,824 + -0.3 543,824 + -0.7 543,825 - -0.4 543,825 - +0.9 543,825 - -0.4 543,825 - +0.1 543,825 - +0.6 543,825 - -0.0 543,825 - -2.7 543,825 - +0.9 543,825 - -0.0 543,846 + -0.5 543,908 + DDA3937_RS21810 0.10 +1.2 543,908 + DDA3937_RS21810 0.10 -0.4 543,909 - DDA3937_RS21810 0.11 +0.7 544,007 + DDA3937_RS21810 0.72 -0.3 544,007 + DDA3937_RS21810 0.72 +0.1 544,008 - DDA3937_RS21810 0.72 -2.0 544,030 + DDA3937_RS21810 0.86 -0.3 544,031 - DDA3937_RS21810 0.86 -0.0 544,050 + +0.0 544,050 + +0.1 544,051 - -1.4 544,073 + -0.4 544,073 + -1.4 544,073 + +0.7 544,085 - +0.3 544,085 - -0.7 544,287 + DDA3937_RS02455 0.71 -0.2 544,287 + DDA3937_RS02455 0.71 +0.2 544,287 + DDA3937_RS02455 0.71 +0.7 544,288 - DDA3937_RS02455 0.72 -0.0 544,288 - DDA3937_RS02455 0.72 -0.6 544,288 - DDA3937_RS02455 0.72 +0.6 544,288 - DDA3937_RS02455 0.72 +0.6 544,363 + +0.1 544,364 - -1.0 544,367 + -0.2 544,368 - +0.6 544,624 + DDA3937_RS02460 0.25 -0.4 544,651 + DDA3937_RS02460 0.28 -0.4 544,651 + DDA3937_RS02460 0.28 -0.1 544,651 + DDA3937_RS02460 0.28 -1.0 544,652 - DDA3937_RS02460 0.29 +0.4
Or see this region's nucleotide sequence