Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02270 and DDA3937_RS02275 are separated by 44 nucleotides DDA3937_RS02275 and DDA3937_RS02280 are separated by 183 nucleotides DDA3937_RS02280 and DDA3937_RS02285 are separated by 383 nucleotides
DDA3937_RS02270: DDA3937_RS02270 - DUF4276 family protein, at 503,959 to 504,612
_RS02270
DDA3937_RS02275: DDA3937_RS02275 - Lrp/AsnC ligand binding domain-containing protein, at 504,657 to 505,160
_RS02275
DDA3937_RS02280: DDA3937_RS02280 - chorismate mutase, at 505,344 to 505,874
_RS02280
DDA3937_RS02285: DDA3937_RS02285 - MFS transporter, at 506,258 to 507,490
_RS02285
Position (kb) 505
506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 504.445 kb on - strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.474 kb on + strand, within DDA3937_RS02270 at 504.486 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.496 kb on + strand, within DDA3937_RS02270 at 504.497 kb on - strand, within DDA3937_RS02270 at 504.509 kb on + strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.615 kb on + strand at 504.615 kb on + strand at 504.616 kb on - strand at 504.616 kb on - strand at 504.628 kb on - strand at 504.637 kb on - strand at 504.637 kb on - strand at 504.658 kb on + strand at 504.659 kb on - strand at 504.701 kb on + strand at 504.758 kb on + strand, within DDA3937_RS02275 at 504.758 kb on + strand, within DDA3937_RS02275 at 504.759 kb on - strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.961 kb on + strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand at 505.005 kb on + strand, within DDA3937_RS02275 at 505.005 kb on + strand, within DDA3937_RS02275 at 505.005 kb on + strand, within DDA3937_RS02275 at 505.006 kb on - strand, within DDA3937_RS02275 at 505.078 kb on + strand, within DDA3937_RS02275 at 505.079 kb on - strand, within DDA3937_RS02275 at 505.079 kb on - strand, within DDA3937_RS02275 at 505.176 kb on - strand at 505.188 kb on + strand at 505.188 kb on + strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.228 kb on - strand at 505.249 kb on + strand at 505.250 kb on - strand at 505.297 kb on - strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.346 kb on - strand at 505.353 kb on + strand at 505.600 kb on + strand, within DDA3937_RS02280 at 505.754 kb on - strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.775 kb on - strand, within DDA3937_RS02280 at 505.869 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.898 kb on - strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 506.033 kb on + strand at 506.131 kb on + strand at 506.131 kb on + strand at 506.132 kb on - strand at 506.205 kb on - strand at 506.216 kb on + strand at 506.216 kb on + strand at 506.217 kb on - strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.365 kb on + strand at 506.488 kb on - strand, within DDA3937_RS02285 at 506.521 kb on + strand, within DDA3937_RS02285 at 506.521 kb on + strand at 506.522 kb on - strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.560 kb on - strand, within DDA3937_RS02285 at 506.560 kb on - strand, within DDA3937_RS02285 at 506.722 kb on + strand, within DDA3937_RS02285 at 506.740 kb on - strand, within DDA3937_RS02285 at 506.809 kb on + strand, within DDA3937_RS02285 at 506.809 kb on + strand, within DDA3937_RS02285 at 506.810 kb on - strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.813 kb on - strand, within DDA3937_RS02285 at 506.862 kb on - strand, within DDA3937_RS02285
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 504,445 - DDA3937_RS02270 0.74 -1.7 504,468 + DDA3937_RS02270 0.78 -1.1 504,468 + DDA3937_RS02270 0.78 -2.4 504,474 + DDA3937_RS02270 0.79 +0.1 504,486 + DDA3937_RS02270 0.81 +0.7 504,492 + DDA3937_RS02270 0.81 -0.1 504,492 + DDA3937_RS02270 0.81 -0.4 504,492 + +0.6 504,492 + DDA3937_RS02270 0.81 -0.2 504,492 + DDA3937_RS02270 0.81 +0.6 504,493 - DDA3937_RS02270 0.82 -0.3 504,493 - DDA3937_RS02270 0.82 -0.5 504,496 + DDA3937_RS02270 0.82 -0.7 504,497 - DDA3937_RS02270 0.82 -1.0 504,509 + DDA3937_RS02270 0.84 +0.1 504,510 - DDA3937_RS02270 0.84 -0.3 504,510 - DDA3937_RS02270 0.84 -1.7 504,510 - DDA3937_RS02270 0.84 -0.6 504,615 + -0.7 504,615 + +0.2 504,616 - -0.1 504,616 - -0.2 504,628 - -0.2 504,637 - +0.5 504,637 - -0.8 504,658 + +0.0 504,659 - -0.7 504,701 + +0.9 504,758 + DDA3937_RS02275 0.20 +0.5 504,758 + DDA3937_RS02275 0.20 +0.4 504,759 - DDA3937_RS02275 0.20 -0.3 504,799 + DDA3937_RS02275 0.28 +2.6 504,799 + DDA3937_RS02275 0.28 -1.2 504,799 + DDA3937_RS02275 0.28 +0.2 504,800 - DDA3937_RS02275 0.28 -2.1 504,800 - DDA3937_RS02275 0.28 +0.5 504,800 - DDA3937_RS02275 0.28 +0.1 504,800 - DDA3937_RS02275 0.28 -0.4 504,800 - DDA3937_RS02275 0.28 -0.2 504,833 + DDA3937_RS02275 0.35 -0.5 504,833 + DDA3937_RS02275 0.35 +0.2 504,834 - DDA3937_RS02275 0.35 -1.3 504,834 - DDA3937_RS02275 0.35 +0.3 504,961 + DDA3937_RS02275 0.60 -0.3 504,962 - DDA3937_RS02275 0.61 -1.1 504,962 - DDA3937_RS02275 0.61 +0.0 504,962 - +0.6 505,005 + DDA3937_RS02275 0.69 -1.0 505,005 + DDA3937_RS02275 0.69 +0.6 505,005 + DDA3937_RS02275 0.69 -0.3 505,006 - DDA3937_RS02275 0.69 +0.3 505,078 + DDA3937_RS02275 0.84 +0.4 505,079 - DDA3937_RS02275 0.84 +0.2 505,079 - DDA3937_RS02275 0.84 +0.5 505,176 - -0.3 505,188 + -0.1 505,188 + +0.1 505,189 - -0.3 505,189 - +0.6 505,189 - -0.1 505,189 - -1.4 505,189 - -0.9 505,228 - -1.0 505,249 + -0.2 505,250 - +1.6 505,297 - +0.2 505,345 + +0.2 505,345 + +0.6 505,345 + -0.4 505,345 + -0.4 505,346 - -1.2 505,353 + +0.0 505,600 + DDA3937_RS02280 0.48 +1.1 505,754 - DDA3937_RS02280 0.77 +0.3 505,774 + DDA3937_RS02280 0.81 -1.3 505,774 + DDA3937_RS02280 0.81 -1.4 505,774 + DDA3937_RS02280 0.81 +0.0 505,775 - DDA3937_RS02280 0.81 -1.4 505,869 + +0.2 505,874 + -1.2 505,874 + +0.1 505,874 + -0.2 505,874 + -0.4 505,874 + +3.6 505,874 + +0.2 505,874 + +0.7 505,874 + +0.2 505,874 + -0.2 505,875 - +0.0 505,875 - -0.5 505,875 - +0.0 505,875 - +1.6 505,875 - +0.9 505,875 - +0.9 505,875 - -1.6 505,897 + -0.8 505,897 + +0.0 505,897 + -0.2 505,898 - -0.3 505,972 + -0.2 505,972 + +0.2 505,972 + +0.2 505,972 + -2.0 505,972 + -1.4 505,972 + +0.8 505,972 + +0.1 505,973 - +0.5 505,973 - -2.2 505,973 - +0.3 505,973 - -0.0 505,973 - -0.4 505,973 - +0.5 505,973 - +0.6 505,973 - -2.1 505,973 - +0.5 505,973 - -0.5 506,033 + -0.8 506,131 + -0.0 506,131 + +1.0 506,132 - +0.1 506,205 - +0.3 506,216 + -0.3 506,216 + -2.2 506,217 - -0.7 506,253 + +0.5 506,253 + +0.6 506,253 + +0.3 506,253 + -0.4 506,253 + +1.2 506,254 - +0.6 506,254 - -0.7 506,254 - +0.2 506,254 - -0.4 506,254 - -0.8 506,254 - +0.2 506,365 + -2.6 506,488 - DDA3937_RS02285 0.19 -0.1 506,521 + DDA3937_RS02285 0.21 -2.3 506,521 + -1.0 506,522 - DDA3937_RS02285 0.21 +0.5 506,559 + DDA3937_RS02285 0.24 +0.8 506,559 + DDA3937_RS02285 0.24 -0.9 506,559 + DDA3937_RS02285 0.24 -0.2 506,560 - DDA3937_RS02285 0.24 +0.9 506,560 - DDA3937_RS02285 0.24 +0.9 506,722 + DDA3937_RS02285 0.38 -1.4 506,740 - DDA3937_RS02285 0.39 +0.7 506,809 + DDA3937_RS02285 0.45 -0.4 506,809 + DDA3937_RS02285 0.45 -0.6 506,810 - DDA3937_RS02285 0.45 +1.1 506,812 + DDA3937_RS02285 0.45 +1.9 506,812 + DDA3937_RS02285 0.45 +0.7 506,812 + DDA3937_RS02285 0.45 -0.6 506,813 - DDA3937_RS02285 0.45 -0.6 506,862 - DDA3937_RS02285 0.49 -0.0
Or see this region's nucleotide sequence