Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02155 and DDA3937_RS02160 are separated by 342 nucleotides DDA3937_RS02160 and DDA3937_RS02165 are separated by 2 nucleotides DDA3937_RS02165 and DDA3937_RS02170 are separated by 13 nucleotides
DDA3937_RS02155: DDA3937_RS02155 - DeoR/GlpR transcriptional regulator, at 479,045 to 479,836
_RS02155
DDA3937_RS02160: DDA3937_RS02160 - transketolase, at 480,179 to 480,982
_RS02160
DDA3937_RS02165: DDA3937_RS02165 - transketolase, at 480,985 to 481,905
_RS02165
DDA3937_RS02170: DDA3937_RS02170 - D-threitol dehydrogenase, at 481,919 to 482,722
_RS02170
Position (kb) 480
481 Strain fitness (log2 ratio) -2
-1
0
1 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.268 kb on - strand, within DDA3937_RS02155 at 479.437 kb on + strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.658 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.671 kb on - strand, within DDA3937_RS02155 at 479.758 kb on + strand at 479.889 kb on - strand at 480.175 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.225 kb on - strand at 480.299 kb on - strand, within DDA3937_RS02160 at 480.299 kb on - strand, within DDA3937_RS02160 at 480.761 kb on - strand, within DDA3937_RS02160 at 480.875 kb on - strand, within DDA3937_RS02160 at 480.995 kb on + strand at 481.055 kb on + strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.059 kb on - strand at 481.059 kb on - strand at 481.261 kb on + strand at 481.262 kb on - strand, within DDA3937_RS02165 at 481.262 kb on - strand at 481.338 kb on + strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.453 kb on + strand, within DDA3937_RS02165 at 481.453 kb on + strand at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.456 kb on - strand at 481.682 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.750 kb on - strand, within DDA3937_RS02165 at 481.804 kb on - strand, within DDA3937_RS02165 at 481.810 kb on - strand, within DDA3937_RS02165 at 481.869 kb on - strand at 481.937 kb on + strand at 481.938 kb on - strand at 481.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 479,202 + DDA3937_RS02155 0.20 -0.1 479,202 + DDA3937_RS02155 0.20 +0.8 479,202 + DDA3937_RS02155 0.20 +0.7 479,203 - DDA3937_RS02155 0.20 +0.1 479,203 - DDA3937_RS02155 0.20 +1.0 479,203 - DDA3937_RS02155 0.20 +0.9 479,203 - DDA3937_RS02155 0.20 -0.6 479,268 - DDA3937_RS02155 0.28 +1.1 479,437 + DDA3937_RS02155 0.49 +1.2 479,656 - DDA3937_RS02155 0.77 +0.8 479,656 - DDA3937_RS02155 0.77 +0.8 479,658 + DDA3937_RS02155 0.77 +0.8 479,670 + DDA3937_RS02155 0.79 +0.5 479,670 + DDA3937_RS02155 0.79 -0.3 479,670 + DDA3937_RS02155 0.79 +1.4 479,671 - DDA3937_RS02155 0.79 -0.2 479,758 + +0.3 479,889 - -1.0 480,175 - +0.5 480,187 - +1.3 480,187 - -0.3 480,187 - +0.3 480,187 - +0.7 480,225 - +0.2 480,299 - DDA3937_RS02160 0.15 -1.0 480,299 - DDA3937_RS02160 0.15 -0.4 480,761 - DDA3937_RS02160 0.72 -1.6 480,875 - DDA3937_RS02160 0.87 +1.0 480,995 + +1.0 481,055 + -1.2 481,056 - -0.4 481,056 - +0.2 481,056 - -0.5 481,056 - +1.0 481,056 - -1.6 481,059 - -2.7 481,059 - +0.4 481,261 + -0.4 481,262 - DDA3937_RS02165 0.30 +0.3 481,262 - -1.0 481,338 + DDA3937_RS02165 0.38 +1.6 481,339 - DDA3937_RS02165 0.38 -1.3 481,339 - DDA3937_RS02165 0.38 +0.0 481,339 - DDA3937_RS02165 0.38 -1.7 481,339 - DDA3937_RS02165 0.38 -0.4 481,339 - DDA3937_RS02165 0.38 +0.8 481,339 - DDA3937_RS02165 0.38 +1.3 481,339 - DDA3937_RS02165 0.38 +0.6 481,339 - DDA3937_RS02165 0.38 -0.3 481,339 - DDA3937_RS02165 0.38 -0.6 481,453 + DDA3937_RS02165 0.51 +0.3 481,453 + -0.4 481,454 - DDA3937_RS02165 0.51 -1.7 481,454 - DDA3937_RS02165 0.51 +0.7 481,454 - DDA3937_RS02165 0.51 -0.5 481,454 - DDA3937_RS02165 0.51 -1.7 481,454 - DDA3937_RS02165 0.51 -0.1 481,454 - DDA3937_RS02165 0.51 -0.3 481,454 - DDA3937_RS02165 0.51 -0.6 481,454 - DDA3937_RS02165 0.51 -0.1 481,456 - -1.0 481,682 - DDA3937_RS02165 0.76 +0.5 481,707 - DDA3937_RS02165 0.78 -0.1 481,707 - DDA3937_RS02165 0.78 -0.0 481,750 - DDA3937_RS02165 0.83 +0.3 481,804 - DDA3937_RS02165 0.89 +0.3 481,810 - DDA3937_RS02165 0.90 -1.6 481,869 - +0.3 481,937 + -1.0 481,938 - +0.3 481,938 - -0.2
Or see this region's nucleotide sequence