Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02150 and DDA3937_RS02155 are separated by 122 nucleotides DDA3937_RS02155 and DDA3937_RS02160 are separated by 342 nucleotides
DDA3937_RS02150: DDA3937_RS02150 - AAA family ATPase, at 477,762 to 478,922
_RS02150
DDA3937_RS02155: DDA3937_RS02155 - DeoR/GlpR transcriptional regulator, at 479,045 to 479,836
_RS02155
DDA3937_RS02160: DDA3937_RS02160 - transketolase, at 480,179 to 480,982
_RS02160
Position (kb) 479
480 Strain fitness (log2 ratio) -1
0
1 at 478.093 kb on + strand, within DDA3937_RS02150 at 478.697 kb on + strand, within DDA3937_RS02150 at 478.785 kb on + strand, within DDA3937_RS02150 at 478.984 kb on + strand at 478.992 kb on + strand at 479.027 kb on + strand at 479.028 kb on - strand at 479.031 kb on + strand at 479.031 kb on + strand at 479.032 kb on - strand at 479.032 kb on - strand at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.268 kb on - strand, within DDA3937_RS02155 at 479.437 kb on + strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.658 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.671 kb on - strand, within DDA3937_RS02155 at 479.758 kb on + strand at 479.889 kb on - strand at 480.175 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.225 kb on - strand at 480.299 kb on - strand, within DDA3937_RS02160 at 480.299 kb on - strand, within DDA3937_RS02160 at 480.761 kb on - strand, within DDA3937_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 478,093 + DDA3937_RS02150 0.29 -1.0 478,697 + DDA3937_RS02150 0.81 -0.8 478,785 + DDA3937_RS02150 0.88 +1.1 478,984 + -1.1 478,992 + +0.2 479,027 + -0.2 479,028 - +0.6 479,031 + -0.5 479,031 + +1.3 479,032 - +0.4 479,032 - -0.1 479,202 + DDA3937_RS02155 0.20 -0.1 479,202 + DDA3937_RS02155 0.20 +0.8 479,202 + DDA3937_RS02155 0.20 +0.7 479,203 - DDA3937_RS02155 0.20 +0.1 479,203 - DDA3937_RS02155 0.20 +1.0 479,203 - DDA3937_RS02155 0.20 +0.9 479,203 - DDA3937_RS02155 0.20 -0.6 479,268 - DDA3937_RS02155 0.28 +1.1 479,437 + DDA3937_RS02155 0.49 +1.2 479,656 - DDA3937_RS02155 0.77 +0.8 479,656 - DDA3937_RS02155 0.77 +0.8 479,658 + DDA3937_RS02155 0.77 +0.8 479,670 + DDA3937_RS02155 0.79 +0.5 479,670 + DDA3937_RS02155 0.79 -0.3 479,670 + DDA3937_RS02155 0.79 +1.4 479,671 - DDA3937_RS02155 0.79 -0.2 479,758 + +0.3 479,889 - -1.0 480,175 - +0.5 480,187 - +1.3 480,187 - -0.3 480,187 - +0.3 480,187 - +0.7 480,225 - +0.2 480,299 - DDA3937_RS02160 0.15 -1.0 480,299 - DDA3937_RS02160 0.15 -0.4 480,761 - DDA3937_RS02160 0.72 -1.6
Or see this region's nucleotide sequence