Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01945 and DDA3937_RS01950 are separated by 74 nucleotides DDA3937_RS01950 and DDA3937_RS01955 are separated by 325 nucleotides DDA3937_RS01955 and DDA3937_RS01960 are separated by 39 nucleotides DDA3937_RS01960 and DDA3937_RS01965 are separated by 283 nucleotides
DDA3937_RS01945: DDA3937_RS01945 - ribonuclease E inhibitor RraB, at 436,735 to 437,163
_RS01945
DDA3937_RS01950: DDA3937_RS01950 - GNAT family N-acetyltransferase, at 437,238 to 437,741
_RS01950
DDA3937_RS01955: DDA3937_RS01955 - helix-turn-helix domain-containing protein, at 438,067 to 438,654
_RS01955
DDA3937_RS01960: DDA3937_RS01960 - GNAT family N-acetyltransferase, at 438,694 to 439,176
_RS01960
DDA3937_RS01965: DDA3937_RS01965 - alpha/beta fold hydrolase, at 439,460 to 440,527
_RS01965
Position (kb) 438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.075 kb on - strand, within DDA3937_RS01945 at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.240 kb on - strand at 437.240 kb on - strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.291 kb on + strand, within DDA3937_RS01950 at 437.291 kb on + strand, within DDA3937_RS01950 at 437.291 kb on + strand, within DDA3937_RS01950 at 437.292 kb on - strand, within DDA3937_RS01950 at 437.368 kb on + strand, within DDA3937_RS01950 at 437.369 kb on - strand, within DDA3937_RS01950 at 437.369 kb on - strand, within DDA3937_RS01950 at 437.462 kb on - strand, within DDA3937_RS01950 at 437.462 kb on - strand, within DDA3937_RS01950 at 437.550 kb on + strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.579 kb on - strand, within DDA3937_RS01950 at 437.618 kb on + strand, within DDA3937_RS01950 at 437.619 kb on - strand, within DDA3937_RS01950 at 437.619 kb on - strand, within DDA3937_RS01950 at 437.620 kb on + strand, within DDA3937_RS01950 at 437.620 kb on + strand, within DDA3937_RS01950 at 437.620 kb on + strand, within DDA3937_RS01950 at 437.621 kb on - strand, within DDA3937_RS01950 at 437.621 kb on - strand, within DDA3937_RS01950 at 437.621 kb on - strand, within DDA3937_RS01950 at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.816 kb on + strand at 437.816 kb on + strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.832 kb on + strand at 437.832 kb on + strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.843 kb on - strand at 437.843 kb on - strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.848 kb on + strand at 437.848 kb on + strand at 437.881 kb on + strand at 438.079 kb on - strand at 438.271 kb on + strand, within DDA3937_RS01955 at 438.271 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.584 kb on - strand, within DDA3937_RS01955 at 438.603 kb on + strand at 438.628 kb on + strand at 438.639 kb on + strand at 438.640 kb on - strand at 438.799 kb on - strand, within DDA3937_RS01960 at 438.834 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 439.096 kb on - strand, within DDA3937_RS01960 at 439.133 kb on - strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.135 kb on - strand at 439.174 kb on + strand at 439.174 kb on + strand at 439.178 kb on + strand at 439.192 kb on - strand at 439.210 kb on + strand at 439.210 kb on + strand at 439.211 kb on - strand at 439.309 kb on + strand at 439.310 kb on - strand at 439.310 kb on - strand at 439.323 kb on - strand at 439.323 kb on - strand at 439.327 kb on + strand at 439.327 kb on + strand at 439.328 kb on - strand at 439.329 kb on + strand at 439.330 kb on - strand at 439.358 kb on - strand at 439.359 kb on + strand at 439.405 kb on + strand at 439.406 kb on - strand at 439.418 kb on - strand at 439.437 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.459 kb on + strand at 439.460 kb on - strand at 439.460 kb on - strand at 439.539 kb on + strand at 439.540 kb on - strand at 439.540 kb on - strand at 439.612 kb on + strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.622 kb on + strand, within DDA3937_RS01965 at 439.623 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand at 439.640 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand, within DDA3937_RS01965 at 439.653 kb on + strand, within DDA3937_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 437,074 + DDA3937_RS01945 0.79 +0.7 437,074 + DDA3937_RS01945 0.79 -0.5 437,074 + DDA3937_RS01945 0.79 +2.8 437,074 + DDA3937_RS01945 0.79 +0.9 437,074 + DDA3937_RS01945 0.79 -0.5 437,074 + DDA3937_RS01945 0.79 +0.4 437,074 + DDA3937_RS01945 0.79 -0.6 437,075 - DDA3937_RS01945 0.79 +0.7 437,131 + +0.0 437,131 + +1.6 437,131 + +0.9 437,131 + -0.4 437,131 + +0.8 437,132 - -0.4 437,132 - -0.7 437,132 - -1.0 437,132 - +0.5 437,132 - -0.7 437,132 - -0.1 437,132 - +0.2 437,132 - +0.3 437,132 - +0.2 437,239 + -1.0 437,239 + -1.4 437,239 + +1.2 437,239 + -0.9 437,240 - -0.2 437,240 - -0.8 437,241 + +0.0 437,241 + +0.3 437,241 + +0.7 437,241 + -0.4 437,241 + +0.0 437,242 - -2.0 437,242 - -1.7 437,242 - +0.3 437,242 - +0.1 437,291 + DDA3937_RS01950 0.11 +0.2 437,291 + DDA3937_RS01950 0.11 +0.7 437,291 + DDA3937_RS01950 0.11 +0.2 437,292 - DDA3937_RS01950 0.11 -0.2 437,368 + DDA3937_RS01950 0.26 -0.8 437,369 - DDA3937_RS01950 0.26 +0.6 437,369 - DDA3937_RS01950 0.26 +0.6 437,462 - DDA3937_RS01950 0.44 +0.2 437,462 - DDA3937_RS01950 0.44 -0.3 437,550 + DDA3937_RS01950 0.62 -2.4 437,579 - DDA3937_RS01950 0.68 +2.2 437,579 - DDA3937_RS01950 0.68 +0.3 437,579 - DDA3937_RS01950 0.68 +0.7 437,579 - DDA3937_RS01950 0.68 -0.6 437,579 - DDA3937_RS01950 0.68 +0.6 437,618 + DDA3937_RS01950 0.75 -1.0 437,619 - DDA3937_RS01950 0.76 -1.5 437,619 - DDA3937_RS01950 0.76 -0.7 437,620 + DDA3937_RS01950 0.76 -0.2 437,620 + DDA3937_RS01950 0.76 -1.7 437,620 + DDA3937_RS01950 0.76 -0.4 437,621 - DDA3937_RS01950 0.76 +0.0 437,621 - DDA3937_RS01950 0.76 -0.4 437,621 - DDA3937_RS01950 0.76 -0.6 437,812 + -0.2 437,812 + +1.0 437,812 + -0.9 437,812 + -0.1 437,812 + -1.7 437,812 + +0.8 437,813 - -0.4 437,813 - +0.6 437,813 - -0.5 437,813 - -0.4 437,813 - -0.1 437,816 + -0.4 437,816 + -0.7 437,817 - +0.2 437,817 - -0.3 437,817 - -1.1 437,817 - +0.6 437,828 + +0.0 437,828 + +0.3 437,828 + -1.4 437,829 - +1.0 437,829 - -0.4 437,829 - -0.1 437,832 + -0.5 437,832 + +0.6 437,833 - +0.9 437,833 - -0.6 437,833 - +0.1 437,833 - -0.4 437,833 - -0.3 437,843 - -0.1 437,843 - -2.2 437,844 + -0.8 437,844 + +0.4 437,844 + -0.1 437,844 + +0.6 437,844 + -0.4 437,844 + +0.6 437,844 + -0.1 437,844 + +0.9 437,844 + -0.4 437,844 + +0.1 437,844 + -0.3 437,844 + +1.1 437,845 - +0.7 437,845 - +0.2 437,845 - -0.9 437,845 - +0.7 437,845 - -1.5 437,845 - -1.8 437,845 - +0.8 437,845 - +0.0 437,848 + +0.7 437,848 + -0.4 437,881 + -0.4 438,079 - +0.4 438,271 + DDA3937_RS01955 0.35 -3.0 438,271 + DDA3937_RS01955 0.35 +0.0 438,279 + DDA3937_RS01955 0.36 +0.0 438,279 + DDA3937_RS01955 0.36 -0.6 438,280 - DDA3937_RS01955 0.36 -0.8 438,280 - DDA3937_RS01955 0.36 -1.3 438,280 - DDA3937_RS01955 0.36 -0.5 438,280 - DDA3937_RS01955 0.36 -0.6 438,388 - DDA3937_RS01955 0.55 -1.1 438,388 - DDA3937_RS01955 0.55 -0.4 438,499 + DDA3937_RS01955 0.73 +0.3 438,499 + DDA3937_RS01955 0.73 +0.3 438,499 + DDA3937_RS01955 0.73 -0.2 438,499 + DDA3937_RS01955 0.73 +0.4 438,499 + DDA3937_RS01955 0.73 -0.8 438,500 - DDA3937_RS01955 0.74 -0.3 438,500 - DDA3937_RS01955 0.74 +0.2 438,500 - DDA3937_RS01955 0.74 +0.0 438,500 - DDA3937_RS01955 0.74 -0.2 438,500 - DDA3937_RS01955 0.74 -2.7 438,500 - DDA3937_RS01955 0.74 -0.5 438,500 - DDA3937_RS01955 0.74 +0.3 438,584 - DDA3937_RS01955 0.88 -0.3 438,603 + -1.0 438,628 + -0.1 438,639 + -0.5 438,640 - -2.0 438,799 - DDA3937_RS01960 0.22 +0.4 438,834 - DDA3937_RS01960 0.29 +1.6 438,843 - DDA3937_RS01960 0.31 +0.8 438,843 - DDA3937_RS01960 0.31 -0.4 439,096 - DDA3937_RS01960 0.83 -0.3 439,133 - +0.4 439,134 + +1.0 439,134 + -1.1 439,134 + -0.0 439,134 + -0.2 439,135 - -0.9 439,174 + +0.5 439,174 + -0.5 439,178 + -0.5 439,192 - -0.1 439,210 + +0.3 439,210 + -0.5 439,211 - -0.5 439,309 + -0.4 439,310 - -0.1 439,310 - -1.0 439,323 - -0.2 439,323 - +0.6 439,327 + -0.0 439,327 + +0.6 439,328 - -0.6 439,329 + +0.3 439,330 - +0.2 439,358 - -0.2 439,359 + +0.6 439,405 + -0.4 439,406 - +0.1 439,418 - +0.6 439,437 + +0.1 439,443 + -0.4 439,443 + -0.3 439,443 + -0.3 439,459 + -0.4 439,460 - -0.9 439,460 - +1.6 439,539 + -0.4 439,540 - -0.1 439,540 - -0.1 439,612 + DDA3937_RS01965 0.14 -1.0 439,620 - DDA3937_RS01965 0.15 -0.3 439,620 - DDA3937_RS01965 0.15 -0.1 439,622 + DDA3937_RS01965 0.15 +0.4 439,623 - DDA3937_RS01965 0.15 -1.0 439,640 - -1.4 439,640 - DDA3937_RS01965 0.17 -0.3 439,640 - DDA3937_RS01965 0.17 -0.5 439,653 + DDA3937_RS01965 0.18 -0.5
Or see this region's nucleotide sequence