Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01940

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01935 and DDA3937_RS01940 are separated by 94 nucleotidesDDA3937_RS01940 and DDA3937_RS01945 are separated by 162 nucleotidesDDA3937_RS01945 and DDA3937_RS01950 are separated by 74 nucleotides DDA3937_RS01935: DDA3937_RS01935 - 6-phospho-beta-glucosidase, at 434,025 to 435,461 _RS01935 DDA3937_RS01940: DDA3937_RS01940 - ornithine carbamoyltransferase, at 435,556 to 436,572 _RS01940 DDA3937_RS01945: DDA3937_RS01945 - ribonuclease E inhibitor RraB, at 436,735 to 437,163 _RS01945 DDA3937_RS01950: DDA3937_RS01950 - GNAT family N-acetyltransferase, at 437,238 to 437,741 _RS01950 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3at 434.556 kb on - strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.754 kb on + strand, within DDA3937_RS01935at 434.754 kb on + strand, within DDA3937_RS01935at 434.755 kb on - strand, within DDA3937_RS01935at 434.755 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.823 kb on - strand, within DDA3937_RS01935at 434.857 kb on - strand, within DDA3937_RS01935at 434.943 kb on + strand, within DDA3937_RS01935at 434.944 kb on - strand, within DDA3937_RS01935at 434.944 kb on - strand, within DDA3937_RS01935at 434.944 kb on - strand, within DDA3937_RS01935at 434.954 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.962 kb on - strandat 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strandat 435.042 kb on - strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.144 kb on - strand, within DDA3937_RS01935at 435.173 kb on + strand, within DDA3937_RS01935at 435.173 kb on + strand, within DDA3937_RS01935at 435.174 kb on - strand, within DDA3937_RS01935at 435.174 kb on - strand, within DDA3937_RS01935at 435.174 kb on - strand, within DDA3937_RS01935at 435.233 kb on + strand, within DDA3937_RS01935at 435.285 kb on + strand, within DDA3937_RS01935at 435.459 kb on + strandat 435.459 kb on + strandat 435.460 kb on - strandat 435.460 kb on - strandat 435.460 kb on - strandat 435.460 kb on - strandat 435.557 kb on + strandat 435.844 kb on + strand, within DDA3937_RS01940at 435.845 kb on - strand, within DDA3937_RS01940at 435.883 kb on - strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.895 kb on + strand, within DDA3937_RS01940at 435.896 kb on - strand, within DDA3937_RS01940at 436.056 kb on + strand, within DDA3937_RS01940at 436.056 kb on + strand, within DDA3937_RS01940at 436.057 kb on - strand, within DDA3937_RS01940at 436.057 kb on - strand, within DDA3937_RS01940at 436.068 kb on + strand, within DDA3937_RS01940at 436.091 kb on + strand, within DDA3937_RS01940at 436.271 kb on + strand, within DDA3937_RS01940at 436.271 kb on + strand, within DDA3937_RS01940at 436.272 kb on - strand, within DDA3937_RS01940at 436.346 kb on + strand, within DDA3937_RS01940at 436.347 kb on - strand, within DDA3937_RS01940at 436.371 kb on - strand, within DDA3937_RS01940at 436.371 kb on - strand, within DDA3937_RS01940at 436.560 kb on - strandat 436.560 kb on - strandat 436.585 kb on + strandat 436.625 kb on - strandat 436.626 kb on + strandat 436.699 kb on + strandat 436.699 kb on + strandat 436.705 kb on + strandat 436.828 kb on + strand, within DDA3937_RS01945at 436.829 kb on - strand, within DDA3937_RS01945at 436.829 kb on - strand, within DDA3937_RS01945at 436.829 kb on - strand, within DDA3937_RS01945at 436.829 kb on - strand, within DDA3937_RS01945at 436.829 kb on - strand, within DDA3937_RS01945at 436.906 kb on + strand, within DDA3937_RS01945at 436.971 kb on + strand, within DDA3937_RS01945at 436.972 kb on - strand, within DDA3937_RS01945at 437.056 kb on + strand, within DDA3937_RS01945at 437.056 kb on + strand, within DDA3937_RS01945at 437.056 kb on + strand, within DDA3937_RS01945at 437.056 kb on + strand, within DDA3937_RS01945at 437.057 kb on - strand, within DDA3937_RS01945at 437.057 kb on - strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.074 kb on + strand, within DDA3937_RS01945at 437.075 kb on - strand, within DDA3937_RS01945at 437.131 kb on + strandat 437.131 kb on + strandat 437.131 kb on + strandat 437.131 kb on + strandat 437.131 kb on + strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.132 kb on - strandat 437.239 kb on + strandat 437.239 kb on + strandat 437.239 kb on + strandat 437.239 kb on + strandat 437.240 kb on - strandat 437.240 kb on - strandat 437.241 kb on + strandat 437.241 kb on + strandat 437.241 kb on + strandat 437.241 kb on + strandat 437.241 kb on + strandat 437.242 kb on - strandat 437.242 kb on - strandat 437.242 kb on - strandat 437.242 kb on - strandat 437.291 kb on + strand, within DDA3937_RS01950at 437.291 kb on + strand, within DDA3937_RS01950at 437.291 kb on + strand, within DDA3937_RS01950at 437.292 kb on - strand, within DDA3937_RS01950at 437.368 kb on + strand, within DDA3937_RS01950at 437.369 kb on - strand, within DDA3937_RS01950at 437.369 kb on - strand, within DDA3937_RS01950at 437.462 kb on - strand, within DDA3937_RS01950at 437.462 kb on - strand, within DDA3937_RS01950at 437.550 kb on + strand, within DDA3937_RS01950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
434,556 - DDA3937_RS01935 0.37 +0.5
434,646 + DDA3937_RS01935 0.43 -0.4
434,646 + DDA3937_RS01935 0.43 +1.2
434,646 + DDA3937_RS01935 0.43 +0.0
434,646 + DDA3937_RS01935 0.43 +0.3
434,646 + DDA3937_RS01935 0.43 -0.4
434,646 + DDA3937_RS01935 0.43 -0.4
434,646 + DDA3937_RS01935 0.43 -0.2
434,647 - DDA3937_RS01935 0.43 +0.5
434,647 - DDA3937_RS01935 0.43 +0.6
434,647 - DDA3937_RS01935 0.43 +1.5
434,752 - DDA3937_RS01935 0.51 +0.4
434,752 - DDA3937_RS01935 0.51 +0.1
434,752 - DDA3937_RS01935 0.51 -0.4
434,754 + DDA3937_RS01935 0.51 +1.3
434,754 + DDA3937_RS01935 0.51 -0.0
434,755 - DDA3937_RS01935 0.51 -0.6
434,755 - DDA3937_RS01935 0.51 -1.4
434,818 - DDA3937_RS01935 0.55 -0.8
434,818 - DDA3937_RS01935 0.55 -0.2
434,818 - DDA3937_RS01935 0.55 -0.2
434,818 - DDA3937_RS01935 0.55 +0.4
434,823 - DDA3937_RS01935 0.56 -1.7
434,857 - DDA3937_RS01935 0.58 -0.6
434,943 + DDA3937_RS01935 0.64 -0.3
434,944 - DDA3937_RS01935 0.64 -1.0
434,944 - DDA3937_RS01935 0.64 -0.4
434,944 - DDA3937_RS01935 0.64 -0.3
434,954 + DDA3937_RS01935 0.65 -0.8
434,958 + DDA3937_RS01935 0.65 -0.2
434,958 + DDA3937_RS01935 0.65 -0.7
434,958 + DDA3937_RS01935 0.65 +0.6
434,958 + DDA3937_RS01935 0.65 -0.7
434,958 + DDA3937_RS01935 0.65 +0.0
434,959 - DDA3937_RS01935 0.65 -0.3
434,959 - DDA3937_RS01935 0.65 +0.1
434,959 - DDA3937_RS01935 0.65 +1.0
434,959 - DDA3937_RS01935 0.65 -0.1
434,959 - DDA3937_RS01935 0.65 -0.0
434,959 - DDA3937_RS01935 0.65 -0.4
434,959 - DDA3937_RS01935 0.65 -0.3
434,961 + DDA3937_RS01935 0.65 +0.7
434,961 + DDA3937_RS01935 0.65 +0.6
434,961 + DDA3937_RS01935 0.65 -0.6
434,961 + DDA3937_RS01935 0.65 +1.1
434,961 + DDA3937_RS01935 0.65 +0.1
434,961 + DDA3937_RS01935 0.65 +1.6
434,961 + DDA3937_RS01935 0.65 -0.2
434,961 + DDA3937_RS01935 0.65 +0.4
434,962 - -1.0
434,962 - DDA3937_RS01935 0.65 +1.0
434,962 - DDA3937_RS01935 0.65 +1.1
434,962 - DDA3937_RS01935 0.65 +0.2
434,962 - DDA3937_RS01935 0.65 -0.3
434,962 - DDA3937_RS01935 0.65 -0.4
434,962 - DDA3937_RS01935 0.65 +0.4
434,962 - DDA3937_RS01935 0.65 +0.6
434,962 - DDA3937_RS01935 0.65 +0.6
434,962 - DDA3937_RS01935 0.65 -0.8
434,962 - DDA3937_RS01935 0.65 +0.4
434,962 - DDA3937_RS01935 0.65 +0.2
434,962 - -0.4
435,042 - DDA3937_RS01935 0.71 +1.6
435,117 + DDA3937_RS01935 0.76 -1.0
435,117 + DDA3937_RS01935 0.76 -1.0
435,117 + DDA3937_RS01935 0.76 +0.5
435,117 + DDA3937_RS01935 0.76 -1.1
435,117 + DDA3937_RS01935 0.76 +0.4
435,118 - DDA3937_RS01935 0.76 +0.1
435,118 - DDA3937_RS01935 0.76 +0.8
435,118 - DDA3937_RS01935 0.76 +0.7
435,118 - DDA3937_RS01935 0.76 +0.6
435,118 - DDA3937_RS01935 0.76 -0.2
435,118 - DDA3937_RS01935 0.76 -0.5
435,118 - DDA3937_RS01935 0.76 -0.8
435,118 - DDA3937_RS01935 0.76 +0.9
435,118 - DDA3937_RS01935 0.76 +0.4
435,118 - DDA3937_RS01935 0.76 +0.4
435,144 - DDA3937_RS01935 0.78 -0.3
435,173 + DDA3937_RS01935 0.80 -0.2
435,173 + DDA3937_RS01935 0.80 +0.0
435,174 - DDA3937_RS01935 0.80 +0.8
435,174 - DDA3937_RS01935 0.80 +0.1
435,174 - DDA3937_RS01935 0.80 -0.2
435,233 + DDA3937_RS01935 0.84 -0.4
435,285 + DDA3937_RS01935 0.88 -1.0
435,459 + +0.9
435,459 + -0.2
435,460 - -0.4
435,460 - -0.6
435,460 - +0.4
435,460 - -0.8
435,557 + -0.8
435,844 + DDA3937_RS01940 0.28 +0.2
435,845 - DDA3937_RS01940 0.28 -0.0
435,883 - DDA3937_RS01940 0.32 +0.4
435,884 + DDA3937_RS01940 0.32 +0.9
435,884 + DDA3937_RS01940 0.32 -0.2
435,884 + DDA3937_RS01940 0.32 +0.2
435,884 + DDA3937_RS01940 0.32 +0.1
435,884 + DDA3937_RS01940 0.32 -1.4
435,884 + DDA3937_RS01940 0.32 -0.5
435,885 - DDA3937_RS01940 0.32 -0.5
435,885 - DDA3937_RS01940 0.32 -1.0
435,885 - DDA3937_RS01940 0.32 -1.1
435,885 - DDA3937_RS01940 0.32 +0.6
435,885 - DDA3937_RS01940 0.32 -0.3
435,895 + DDA3937_RS01940 0.33 -1.6
435,896 - DDA3937_RS01940 0.33 -0.4
436,056 + DDA3937_RS01940 0.49 -0.8
436,056 + DDA3937_RS01940 0.49 -1.0
436,057 - DDA3937_RS01940 0.49 -0.5
436,057 - DDA3937_RS01940 0.49 +0.2
436,068 + DDA3937_RS01940 0.50 +0.4
436,091 + DDA3937_RS01940 0.53 -0.2
436,271 + DDA3937_RS01940 0.70 -0.3
436,271 + DDA3937_RS01940 0.70 -1.4
436,272 - DDA3937_RS01940 0.70 -0.3
436,346 + DDA3937_RS01940 0.78 -2.0
436,347 - DDA3937_RS01940 0.78 +0.0
436,371 - DDA3937_RS01940 0.80 +0.6
436,371 - DDA3937_RS01940 0.80 +0.9
436,560 - +1.4
436,560 - -0.0
436,585 + -0.8
436,625 - +0.2
436,626 + -1.0
436,699 + -0.7
436,699 + +0.5
436,705 + +0.0
436,828 + DDA3937_RS01945 0.22 -0.1
436,829 - DDA3937_RS01945 0.22 +0.3
436,829 - DDA3937_RS01945 0.22 -0.7
436,829 - DDA3937_RS01945 0.22 +0.2
436,829 - DDA3937_RS01945 0.22 -1.8
436,829 - DDA3937_RS01945 0.22 -0.2
436,906 + DDA3937_RS01945 0.40 +0.3
436,971 + DDA3937_RS01945 0.55 -1.6
436,972 - DDA3937_RS01945 0.55 +1.0
437,056 + DDA3937_RS01945 0.75 -0.2
437,056 + DDA3937_RS01945 0.75 -0.4
437,056 + DDA3937_RS01945 0.75 -1.0
437,056 + DDA3937_RS01945 0.75 -0.0
437,057 - DDA3937_RS01945 0.75 +0.5
437,057 - DDA3937_RS01945 0.75 +0.3
437,074 + DDA3937_RS01945 0.79 +0.7
437,074 + DDA3937_RS01945 0.79 -0.5
437,074 + DDA3937_RS01945 0.79 +2.8
437,074 + DDA3937_RS01945 0.79 +0.9
437,074 + DDA3937_RS01945 0.79 -0.5
437,074 + DDA3937_RS01945 0.79 +0.4
437,074 + DDA3937_RS01945 0.79 -0.6
437,075 - DDA3937_RS01945 0.79 +0.7
437,131 + +0.0
437,131 + +1.6
437,131 + +0.9
437,131 + -0.4
437,131 + +0.8
437,132 - -0.4
437,132 - -0.7
437,132 - -1.0
437,132 - +0.5
437,132 - -0.7
437,132 - -0.1
437,132 - +0.2
437,132 - +0.3
437,132 - +0.2
437,239 + -1.0
437,239 + -1.4
437,239 + +1.2
437,239 + -0.9
437,240 - -0.2
437,240 - -0.8
437,241 + +0.0
437,241 + +0.3
437,241 + +0.7
437,241 + -0.4
437,241 + +0.0
437,242 - -2.0
437,242 - -1.7
437,242 - +0.3
437,242 - +0.1
437,291 + DDA3937_RS01950 0.11 +0.2
437,291 + DDA3937_RS01950 0.11 +0.7
437,291 + DDA3937_RS01950 0.11 +0.2
437,292 - DDA3937_RS01950 0.11 -0.2
437,368 + DDA3937_RS01950 0.26 -0.8
437,369 - DDA3937_RS01950 0.26 +0.6
437,369 - DDA3937_RS01950 0.26 +0.6
437,462 - DDA3937_RS01950 0.44 +0.2
437,462 - DDA3937_RS01950 0.44 -0.3
437,550 + DDA3937_RS01950 0.62 -2.4

Or see this region's nucleotide sequence