Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01890 and DDA3937_RS01895 are separated by 27 nucleotides DDA3937_RS01895 and DDA3937_RS01900 overlap by 4 nucleotides
DDA3937_RS01890: DDA3937_RS01890 - ABC transporter permease, at 422,460 to 423,404
_RS01890
DDA3937_RS01895: DDA3937_RS01895 - ABC transporter permease, at 423,432 to 424,247
_RS01895
DDA3937_RS01900: DDA3937_RS01900 - ABC transporter ATP-binding protein, at 424,244 to 425,851
_RS01900
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.898 kb on + strand, within DDA3937_RS01890 at 422.902 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.966 kb on + strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand at 422.967 kb on - strand, within DDA3937_RS01890 at 422.967 kb on - strand, within DDA3937_RS01890 at 423.067 kb on + strand, within DDA3937_RS01890 at 423.068 kb on - strand, within DDA3937_RS01890 at 423.087 kb on + strand, within DDA3937_RS01890 at 423.087 kb on + strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.088 kb on - strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.145 kb on + strand, within DDA3937_RS01890 at 423.146 kb on - strand, within DDA3937_RS01890 at 423.146 kb on - strand, within DDA3937_RS01890 at 423.180 kb on - strand, within DDA3937_RS01890 at 423.188 kb on + strand, within DDA3937_RS01890 at 423.188 kb on + strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.189 kb on - strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.198 kb on + strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.199 kb on - strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.330 kb on + strand at 423.330 kb on + strand at 423.330 kb on + strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.423 kb on + strand at 423.424 kb on - strand at 423.424 kb on - strand at 423.796 kb on + strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.865 kb on + strand, within DDA3937_RS01895 at 423.868 kb on + strand, within DDA3937_RS01895 at 424.211 kb on - strand at 424.211 kb on - strand at 424.226 kb on + strand at 424.226 kb on + strand at 424.319 kb on - strand at 424.324 kb on + strand at 424.324 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.328 kb on - strand at 424.328 kb on - strand at 424.414 kb on + strand, within DDA3937_RS01900 at 424.415 kb on - strand, within DDA3937_RS01900 at 424.421 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.524 kb on - strand, within DDA3937_RS01900 at 424.708 kb on - strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.874 kb on - strand, within DDA3937_RS01900 at 424.991 kb on + strand, within DDA3937_RS01900 at 424.991 kb on + strand, within DDA3937_RS01900 at 424.991 kb on + strand at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 425.115 kb on + strand, within DDA3937_RS01900 at 425.115 kb on + strand, within DDA3937_RS01900 at 425.116 kb on - strand, within DDA3937_RS01900 at 425.116 kb on - strand, within DDA3937_RS01900 at 425.192 kb on - strand, within DDA3937_RS01900
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 422,898 + DDA3937_RS01890 0.46 -0.4 422,902 + DDA3937_RS01890 0.47 +1.4 422,966 + DDA3937_RS01890 0.54 -0.2 422,966 + DDA3937_RS01890 0.54 +0.3 422,966 + DDA3937_RS01890 0.54 +0.1 422,966 + DDA3937_RS01890 0.54 +0.4 422,967 - DDA3937_RS01890 0.54 +1.6 422,967 - DDA3937_RS01890 0.54 +0.0 422,967 - +0.6 422,967 - DDA3937_RS01890 0.54 +1.0 422,967 - DDA3937_RS01890 0.54 -0.4 423,067 + DDA3937_RS01890 0.64 -0.5 423,068 - DDA3937_RS01890 0.64 -1.1 423,087 + DDA3937_RS01890 0.66 +1.0 423,087 + DDA3937_RS01890 0.66 +1.1 423,088 - DDA3937_RS01890 0.66 -1.0 423,088 - DDA3937_RS01890 0.66 -1.1 423,088 - DDA3937_RS01890 0.66 +0.3 423,088 - DDA3937_RS01890 0.66 -0.4 423,145 + DDA3937_RS01890 0.72 +0.2 423,145 + DDA3937_RS01890 0.72 -0.6 423,145 + DDA3937_RS01890 0.72 -0.1 423,145 + DDA3937_RS01890 0.72 +0.2 423,145 + DDA3937_RS01890 0.72 -1.1 423,146 - DDA3937_RS01890 0.73 -0.1 423,146 - DDA3937_RS01890 0.73 -0.4 423,180 - DDA3937_RS01890 0.76 -0.8 423,188 + DDA3937_RS01890 0.77 +1.2 423,188 + DDA3937_RS01890 0.77 -0.3 423,189 - DDA3937_RS01890 0.77 -2.2 423,189 - DDA3937_RS01890 0.77 +0.1 423,189 - DDA3937_RS01890 0.77 -0.4 423,198 + DDA3937_RS01890 0.78 -0.2 423,198 + DDA3937_RS01890 0.78 +0.6 423,198 + DDA3937_RS01890 0.78 -1.0 423,199 - DDA3937_RS01890 0.78 +0.0 423,199 - DDA3937_RS01890 0.78 -0.1 423,199 - DDA3937_RS01890 0.78 +0.0 423,258 + DDA3937_RS01890 0.84 +1.0 423,258 + DDA3937_RS01890 0.84 -1.1 423,258 + DDA3937_RS01890 0.84 -0.1 423,258 + DDA3937_RS01890 0.84 -0.2 423,258 + DDA3937_RS01890 0.84 +0.3 423,258 + DDA3937_RS01890 0.84 +0.6 423,258 + DDA3937_RS01890 0.84 -0.0 423,259 - DDA3937_RS01890 0.85 -0.6 423,259 - DDA3937_RS01890 0.85 +0.5 423,259 - DDA3937_RS01890 0.85 +0.6 423,259 - DDA3937_RS01890 0.85 -0.3 423,259 - DDA3937_RS01890 0.85 +0.8 423,259 - DDA3937_RS01890 0.85 -0.5 423,259 - DDA3937_RS01890 0.85 +0.7 423,330 + -1.0 423,330 + -0.1 423,330 + -0.5 423,331 - -0.1 423,331 - +0.5 423,331 - +0.0 423,331 - +0.5 423,423 + -0.8 423,424 - +0.8 423,424 - -0.2 423,796 + DDA3937_RS01895 0.45 +0.1 423,797 - DDA3937_RS01895 0.45 -0.0 423,797 - DDA3937_RS01895 0.45 +0.1 423,865 + DDA3937_RS01895 0.53 +0.6 423,868 + DDA3937_RS01895 0.53 +1.4 424,211 - +0.0 424,211 - +0.5 424,226 + +0.0 424,226 + +0.6 424,319 - +0.3 424,324 + -0.4 424,324 + +0.1 424,327 + +1.4 424,327 + -0.5 424,327 + -1.7 424,328 - -1.0 424,328 - +0.2 424,414 + DDA3937_RS01900 0.11 -0.4 424,415 - DDA3937_RS01900 0.11 -1.0 424,421 - DDA3937_RS01900 0.11 +0.6 424,436 - DDA3937_RS01900 0.12 -1.1 424,436 - DDA3937_RS01900 0.12 +0.6 424,436 - DDA3937_RS01900 0.12 -2.4 424,436 - DDA3937_RS01900 0.12 -0.1 424,436 - DDA3937_RS01900 0.12 +2.4 424,436 - DDA3937_RS01900 0.12 -0.4 424,524 - DDA3937_RS01900 0.17 +0.1 424,708 - DDA3937_RS01900 0.29 -0.2 424,871 + DDA3937_RS01900 0.39 +0.6 424,871 + DDA3937_RS01900 0.39 -1.4 424,871 + DDA3937_RS01900 0.39 -0.7 424,871 + DDA3937_RS01900 0.39 +0.9 424,871 + DDA3937_RS01900 0.39 -2.7 424,871 + DDA3937_RS01900 0.39 -0.4 424,872 - DDA3937_RS01900 0.39 +0.0 424,872 - DDA3937_RS01900 0.39 -0.1 424,872 - DDA3937_RS01900 0.39 -0.2 424,872 - DDA3937_RS01900 0.39 -0.4 424,873 + DDA3937_RS01900 0.39 +0.2 424,873 + DDA3937_RS01900 0.39 +0.2 424,873 + DDA3937_RS01900 0.39 +0.2 424,874 - DDA3937_RS01900 0.39 -1.4 424,991 + DDA3937_RS01900 0.46 -1.8 424,991 + DDA3937_RS01900 0.46 +0.0 424,991 + +0.9 424,992 - DDA3937_RS01900 0.47 +0.3 424,992 - DDA3937_RS01900 0.47 -0.4 424,992 - DDA3937_RS01900 0.47 -1.8 424,992 - DDA3937_RS01900 0.47 -1.0 425,115 + DDA3937_RS01900 0.54 +2.6 425,115 + DDA3937_RS01900 0.54 +0.9 425,116 - DDA3937_RS01900 0.54 +1.1 425,116 - DDA3937_RS01900 0.54 -0.9 425,192 - DDA3937_RS01900 0.59 +0.8
Or see this region's nucleotide sequence