Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01885

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01880 and DDA3937_RS01885 are separated by 73 nucleotidesDDA3937_RS01885 and DDA3937_RS01890 are separated by 88 nucleotides DDA3937_RS01880: DDA3937_RS01880 - homocysteine S-methyltransferase family protein, at 419,848 to 420,756 _RS01880 DDA3937_RS01885: DDA3937_RS01885 - ABC transporter substrate-binding protein, at 420,830 to 422,371 _RS01885 DDA3937_RS01890: DDA3937_RS01890 - ABC transporter permease, at 422,460 to 423,404 _RS01890 Position (kb) 420 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 419.836 kb on + strandat 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.976 kb on - strand, within DDA3937_RS01880at 419.976 kb on - strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 420.012 kb on + strand, within DDA3937_RS01880at 420.025 kb on + strand, within DDA3937_RS01880at 420.046 kb on - strand, within DDA3937_RS01880at 420.046 kb on - strand, within DDA3937_RS01880at 420.046 kb on - strand, within DDA3937_RS01880at 420.250 kb on + strand, within DDA3937_RS01880at 420.250 kb on + strand, within DDA3937_RS01880at 420.352 kb on - strand, within DDA3937_RS01880at 420.352 kb on - strand, within DDA3937_RS01880at 420.462 kb on + strand, within DDA3937_RS01880at 420.462 kb on + strand, within DDA3937_RS01880at 420.462 kb on + strand, within DDA3937_RS01880at 420.463 kb on - strand, within DDA3937_RS01880at 420.468 kb on + strand, within DDA3937_RS01880at 420.553 kb on + strand, within DDA3937_RS01880at 420.553 kb on + strand, within DDA3937_RS01880at 420.553 kb on + strand, within DDA3937_RS01880at 420.554 kb on - strand, within DDA3937_RS01880at 420.554 kb on - strand, within DDA3937_RS01880at 420.579 kb on + strand, within DDA3937_RS01880at 420.640 kb on + strand, within DDA3937_RS01880at 420.641 kb on - strand, within DDA3937_RS01880at 420.783 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.847 kb on + strandat 420.848 kb on - strandat 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strandat 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strandat 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.158 kb on + strand, within DDA3937_RS01885at 421.158 kb on + strand, within DDA3937_RS01885at 421.159 kb on - strand, within DDA3937_RS01885at 421.177 kb on + strand, within DDA3937_RS01885at 421.203 kb on - strand, within DDA3937_RS01885at 421.254 kb on - strand, within DDA3937_RS01885at 421.345 kb on - strand, within DDA3937_RS01885at 421.415 kb on - strand, within DDA3937_RS01885at 421.415 kb on - strand, within DDA3937_RS01885at 421.415 kb on - strand, within DDA3937_RS01885at 421.444 kb on + strand, within DDA3937_RS01885at 421.528 kb on + strand, within DDA3937_RS01885at 421.721 kb on + strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.952 kb on + strand, within DDA3937_RS01885at 421.952 kb on + strand, within DDA3937_RS01885at 421.993 kb on - strand, within DDA3937_RS01885at 422.264 kb on + strandat 422.264 kb on + strandat 422.265 kb on - strandat 422.898 kb on + strand, within DDA3937_RS01890at 422.902 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.967 kb on - strand, within DDA3937_RS01890at 422.967 kb on - strand, within DDA3937_RS01890at 422.967 kb on - strandat 422.967 kb on - strand, within DDA3937_RS01890at 422.967 kb on - strand, within DDA3937_RS01890at 423.067 kb on + strand, within DDA3937_RS01890at 423.068 kb on - strand, within DDA3937_RS01890at 423.087 kb on + strand, within DDA3937_RS01890at 423.087 kb on + strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.146 kb on - strand, within DDA3937_RS01890at 423.146 kb on - strand, within DDA3937_RS01890at 423.180 kb on - strand, within DDA3937_RS01890at 423.188 kb on + strand, within DDA3937_RS01890at 423.188 kb on + strand, within DDA3937_RS01890at 423.189 kb on - strand, within DDA3937_RS01890at 423.189 kb on - strand, within DDA3937_RS01890at 423.189 kb on - strand, within DDA3937_RS01890at 423.198 kb on + strand, within DDA3937_RS01890at 423.198 kb on + strand, within DDA3937_RS01890at 423.198 kb on + strand, within DDA3937_RS01890at 423.199 kb on - strand, within DDA3937_RS01890at 423.199 kb on - strand, within DDA3937_RS01890at 423.199 kb on - strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.330 kb on + strandat 423.330 kb on + strandat 423.330 kb on + strandat 423.331 kb on - strandat 423.331 kb on - strandat 423.331 kb on - strandat 423.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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419,836 + -1.0
419,975 + DDA3937_RS01880 0.14 -0.3
419,975 + DDA3937_RS01880 0.14 -0.0
419,975 + DDA3937_RS01880 0.14 -0.5
419,975 + DDA3937_RS01880 0.14 +0.8
419,975 + DDA3937_RS01880 0.14 +0.0
419,975 + DDA3937_RS01880 0.14 -0.5
419,975 + DDA3937_RS01880 0.14 +0.1
419,976 - DDA3937_RS01880 0.14 +0.4
419,976 - DDA3937_RS01880 0.14 -0.4
419,986 + DDA3937_RS01880 0.15 +0.3
419,986 + DDA3937_RS01880 0.15 +0.0
419,986 + DDA3937_RS01880 0.15 -1.4
419,986 + DDA3937_RS01880 0.15 -1.1
419,986 + DDA3937_RS01880 0.15 -0.7
419,986 + DDA3937_RS01880 0.15 +0.2
419,986 + DDA3937_RS01880 0.15 +0.5
419,986 + DDA3937_RS01880 0.15 +0.2
419,986 + DDA3937_RS01880 0.15 -0.5
419,986 + DDA3937_RS01880 0.15 -0.5
419,986 + DDA3937_RS01880 0.15 -0.3
419,986 + DDA3937_RS01880 0.15 +0.7
419,986 + DDA3937_RS01880 0.15 -1.0
419,986 + DDA3937_RS01880 0.15 +0.9
419,986 + DDA3937_RS01880 0.15 +1.4
419,986 + DDA3937_RS01880 0.15 -1.4
419,986 + DDA3937_RS01880 0.15 -1.4
419,986 + DDA3937_RS01880 0.15 +0.3
419,987 - DDA3937_RS01880 0.15 -2.2
419,987 - DDA3937_RS01880 0.15 +1.0
419,987 - DDA3937_RS01880 0.15 +2.2
419,987 - DDA3937_RS01880 0.15 -0.8
419,987 - DDA3937_RS01880 0.15 +0.3
419,987 - DDA3937_RS01880 0.15 -0.4
419,987 - DDA3937_RS01880 0.15 -0.6
419,987 - DDA3937_RS01880 0.15 -1.1
420,012 + DDA3937_RS01880 0.18 +0.0
420,025 + DDA3937_RS01880 0.19 +0.8
420,046 - DDA3937_RS01880 0.22 +0.6
420,046 - DDA3937_RS01880 0.22 -0.4
420,046 - DDA3937_RS01880 0.22 +0.1
420,250 + DDA3937_RS01880 0.44 +0.5
420,250 + DDA3937_RS01880 0.44 +0.1
420,352 - DDA3937_RS01880 0.55 -0.8
420,352 - DDA3937_RS01880 0.55 -0.7
420,462 + DDA3937_RS01880 0.68 +0.0
420,462 + DDA3937_RS01880 0.68 +0.3
420,462 + DDA3937_RS01880 0.68 -1.4
420,463 - DDA3937_RS01880 0.68 +0.4
420,468 + DDA3937_RS01880 0.68 +0.6
420,553 + DDA3937_RS01880 0.78 -0.2
420,553 + DDA3937_RS01880 0.78 +0.2
420,553 + DDA3937_RS01880 0.78 -1.8
420,554 - DDA3937_RS01880 0.78 -0.4
420,554 - DDA3937_RS01880 0.78 +1.2
420,579 + DDA3937_RS01880 0.80 +0.4
420,640 + DDA3937_RS01880 0.87 +0.6
420,641 - DDA3937_RS01880 0.87 -0.7
420,783 - -0.2
420,786 - -1.2
420,786 - -0.2
420,786 - +0.7
420,786 - -0.6
420,786 - -0.5
420,786 - +1.2
420,847 + -1.2
420,848 - +0.2
421,019 + DDA3937_RS01885 0.12 +0.9
421,019 + DDA3937_RS01885 0.12 -0.6
421,019 + DDA3937_RS01885 0.12 -1.2
421,019 + DDA3937_RS01885 0.12 -0.4
421,019 + DDA3937_RS01885 0.12 -0.0
421,019 + DDA3937_RS01885 0.12 -0.3
421,019 + DDA3937_RS01885 0.12 -0.5
421,020 - DDA3937_RS01885 0.12 +0.8
421,020 - DDA3937_RS01885 0.12 -0.1
421,020 - DDA3937_RS01885 0.12 -0.4
421,020 - DDA3937_RS01885 0.12 +0.4
421,020 - DDA3937_RS01885 0.12 -1.8
421,020 - DDA3937_RS01885 0.12 +0.2
421,020 - DDA3937_RS01885 0.12 -0.5
421,021 + DDA3937_RS01885 0.12 +0.4
421,021 + DDA3937_RS01885 0.12 +0.1
421,021 + DDA3937_RS01885 0.12 -1.2
421,021 + DDA3937_RS01885 0.12 -0.1
421,021 + DDA3937_RS01885 0.12 +0.0
421,021 + DDA3937_RS01885 0.12 +0.3
421,021 + DDA3937_RS01885 0.12 +0.2
421,022 - DDA3937_RS01885 0.12 +1.4
421,022 - DDA3937_RS01885 0.12 +0.0
421,022 - DDA3937_RS01885 0.12 +0.2
421,022 - DDA3937_RS01885 0.12 -1.9
421,022 - +1.2
421,022 - DDA3937_RS01885 0.12 -0.7
421,022 - DDA3937_RS01885 0.12 -0.4
421,022 - DDA3937_RS01885 0.12 -0.2
421,025 + DDA3937_RS01885 0.13 -0.1
421,025 + DDA3937_RS01885 0.13 +0.6
421,025 + DDA3937_RS01885 0.13 +0.4
421,025 + DDA3937_RS01885 0.13 -0.8
421,025 + DDA3937_RS01885 0.13 +0.1
421,025 + DDA3937_RS01885 0.13 +0.2
421,025 + +1.2
421,025 + DDA3937_RS01885 0.13 +0.4
421,025 + DDA3937_RS01885 0.13 +0.4
421,025 + DDA3937_RS01885 0.13 +0.2
421,025 + DDA3937_RS01885 0.13 -0.3
421,026 - DDA3937_RS01885 0.13 +0.0
421,026 - DDA3937_RS01885 0.13 +0.1
421,026 - DDA3937_RS01885 0.13 +0.1
421,026 - DDA3937_RS01885 0.13 -0.6
421,026 - DDA3937_RS01885 0.13 -0.0
421,158 + DDA3937_RS01885 0.21 +0.1
421,158 + DDA3937_RS01885 0.21 -0.3
421,159 - DDA3937_RS01885 0.21 +0.6
421,177 + DDA3937_RS01885 0.23 -1.1
421,203 - DDA3937_RS01885 0.24 +0.7
421,254 - DDA3937_RS01885 0.27 +0.6
421,345 - DDA3937_RS01885 0.33 -0.4
421,415 - DDA3937_RS01885 0.38 -1.5
421,415 - DDA3937_RS01885 0.38 -0.3
421,415 - DDA3937_RS01885 0.38 +0.5
421,444 + DDA3937_RS01885 0.40 -2.3
421,528 + DDA3937_RS01885 0.45 -0.1
421,721 + DDA3937_RS01885 0.58 -0.5
421,722 - DDA3937_RS01885 0.58 +1.2
421,722 - DDA3937_RS01885 0.58 +0.5
421,722 - DDA3937_RS01885 0.58 +0.1
421,952 + DDA3937_RS01885 0.73 +1.6
421,952 + DDA3937_RS01885 0.73 +0.3
421,993 - DDA3937_RS01885 0.75 -1.0
422,264 + -0.7
422,264 + -0.7
422,265 - -0.7
422,898 + DDA3937_RS01890 0.46 -0.4
422,902 + DDA3937_RS01890 0.47 +1.4
422,966 + DDA3937_RS01890 0.54 -0.2
422,966 + DDA3937_RS01890 0.54 +0.3
422,966 + DDA3937_RS01890 0.54 +0.1
422,966 + DDA3937_RS01890 0.54 +0.4
422,967 - DDA3937_RS01890 0.54 +1.6
422,967 - DDA3937_RS01890 0.54 +0.0
422,967 - +0.6
422,967 - DDA3937_RS01890 0.54 +1.0
422,967 - DDA3937_RS01890 0.54 -0.4
423,067 + DDA3937_RS01890 0.64 -0.5
423,068 - DDA3937_RS01890 0.64 -1.1
423,087 + DDA3937_RS01890 0.66 +1.0
423,087 + DDA3937_RS01890 0.66 +1.1
423,088 - DDA3937_RS01890 0.66 -1.0
423,088 - DDA3937_RS01890 0.66 -1.1
423,088 - DDA3937_RS01890 0.66 +0.3
423,088 - DDA3937_RS01890 0.66 -0.4
423,145 + DDA3937_RS01890 0.72 +0.2
423,145 + DDA3937_RS01890 0.72 -0.6
423,145 + DDA3937_RS01890 0.72 -0.1
423,145 + DDA3937_RS01890 0.72 +0.2
423,145 + DDA3937_RS01890 0.72 -1.1
423,146 - DDA3937_RS01890 0.73 -0.1
423,146 - DDA3937_RS01890 0.73 -0.4
423,180 - DDA3937_RS01890 0.76 -0.8
423,188 + DDA3937_RS01890 0.77 +1.2
423,188 + DDA3937_RS01890 0.77 -0.3
423,189 - DDA3937_RS01890 0.77 -2.2
423,189 - DDA3937_RS01890 0.77 +0.1
423,189 - DDA3937_RS01890 0.77 -0.4
423,198 + DDA3937_RS01890 0.78 -0.2
423,198 + DDA3937_RS01890 0.78 +0.6
423,198 + DDA3937_RS01890 0.78 -1.0
423,199 - DDA3937_RS01890 0.78 +0.0
423,199 - DDA3937_RS01890 0.78 -0.1
423,199 - DDA3937_RS01890 0.78 +0.0
423,258 + DDA3937_RS01890 0.84 +1.0
423,258 + DDA3937_RS01890 0.84 -1.1
423,258 + DDA3937_RS01890 0.84 -0.1
423,258 + DDA3937_RS01890 0.84 -0.2
423,258 + DDA3937_RS01890 0.84 +0.3
423,258 + DDA3937_RS01890 0.84 +0.6
423,258 + DDA3937_RS01890 0.84 -0.0
423,259 - DDA3937_RS01890 0.85 -0.6
423,259 - DDA3937_RS01890 0.85 +0.5
423,259 - DDA3937_RS01890 0.85 +0.6
423,259 - DDA3937_RS01890 0.85 -0.3
423,259 - DDA3937_RS01890 0.85 +0.8
423,259 - DDA3937_RS01890 0.85 -0.5
423,259 - DDA3937_RS01890 0.85 +0.7
423,330 + -1.0
423,330 + -0.1
423,330 + -0.5
423,331 - -0.1
423,331 - +0.5
423,331 - +0.0
423,331 - +0.5

Or see this region's nucleotide sequence