Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01860 and DDA3937_RS01865 are separated by 385 nucleotides DDA3937_RS01865 and DDA3937_RS01870 are separated by 108 nucleotides DDA3937_RS01870 and DDA3937_RS01875 are separated by 99 nucleotides
DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804
_RS01860
DDA3937_RS01865: DDA3937_RS01865 - YhbP family protein, at 416,190 to 416,642
_RS01865
DDA3937_RS01870: DDA3937_RS01870 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 416,751 to 417,215
_RS01870
DDA3937_RS01875: DDA3937_RS01875 - anaerobic ribonucleoside-triphosphate reductase, at 417,315 to 419,453
_RS01875
Position (kb) 416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.250 kb on + strand, within DDA3937_RS01860 at 415.364 kb on + strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.415 kb on + strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.510 kb on + strand, within DDA3937_RS01860 at 415.511 kb on - strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.632 kb on - strand, within DDA3937_RS01860 at 415.677 kb on + strand at 415.677 kb on + strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.714 kb on + strand at 415.714 kb on + strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.717 kb on + strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.753 kb on - strand at 415.870 kb on + strand at 415.889 kb on + strand at 415.916 kb on + strand at 415.916 kb on + strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 416.071 kb on + strand at 416.090 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.129 kb on - strand at 416.164 kb on - strand at 416.204 kb on + strand at 416.205 kb on - strand at 416.226 kb on + strand at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.328 kb on + strand, within DDA3937_RS01865 at 416.367 kb on - strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.622 kb on - strand at 416.640 kb on + strand at 416.640 kb on + strand at 416.641 kb on - strand at 416.690 kb on - strand at 416.692 kb on - strand at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.915 kb on + strand, within DDA3937_RS01870 at 416.916 kb on - strand, within DDA3937_RS01870 at 417.024 kb on + strand, within DDA3937_RS01870 at 417.024 kb on + strand, within DDA3937_RS01870 at 417.024 kb on + strand, within DDA3937_RS01870 at 417.025 kb on - strand, within DDA3937_RS01870 at 417.025 kb on - strand, within DDA3937_RS01870 at 417.025 kb on - strand, within DDA3937_RS01870 at 417.116 kb on - strand, within DDA3937_RS01870 at 417.158 kb on + strand, within DDA3937_RS01870 at 417.159 kb on - strand, within DDA3937_RS01870 at 417.199 kb on + strand at 417.199 kb on + strand at 417.199 kb on + strand at 417.200 kb on - strand at 417.208 kb on + strand at 417.209 kb on - strand at 417.209 kb on - strand at 417.473 kb on + strand at 417.507 kb on - strand at 417.521 kb on - strand at 417.550 kb on + strand, within DDA3937_RS01875 at 417.550 kb on + strand, within DDA3937_RS01875 at 417.551 kb on - strand, within DDA3937_RS01875 at 417.553 kb on + strand, within DDA3937_RS01875 at 417.568 kb on + strand, within DDA3937_RS01875 at 417.568 kb on + strand, within DDA3937_RS01875 at 417.568 kb on + strand, within DDA3937_RS01875 at 417.569 kb on - strand, within DDA3937_RS01875 at 417.574 kb on + strand, within DDA3937_RS01875 at 417.574 kb on + strand at 417.574 kb on + strand, within DDA3937_RS01875 at 417.575 kb on - strand, within DDA3937_RS01875 at 417.612 kb on + strand, within DDA3937_RS01875 at 417.612 kb on + strand, within DDA3937_RS01875 at 417.613 kb on - strand, within DDA3937_RS01875 at 417.613 kb on - strand, within DDA3937_RS01875 at 417.623 kb on - strand, within DDA3937_RS01875 at 417.639 kb on - strand, within DDA3937_RS01875
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 415,250 + DDA3937_RS01860 0.63 -0.7 415,364 + DDA3937_RS01860 0.71 +0.6 415,365 - DDA3937_RS01860 0.71 -0.1 415,365 - DDA3937_RS01860 0.71 -0.2 415,376 - DDA3937_RS01860 0.72 +0.4 415,376 - DDA3937_RS01860 0.72 -0.6 415,407 + DDA3937_RS01860 0.74 +0.5 415,407 + DDA3937_RS01860 0.74 +0.4 415,407 + DDA3937_RS01860 0.74 +0.6 415,415 + DDA3937_RS01860 0.74 -0.0 415,416 - DDA3937_RS01860 0.74 +0.0 415,416 - DDA3937_RS01860 0.74 +0.8 415,510 + DDA3937_RS01860 0.80 -1.0 415,511 - DDA3937_RS01860 0.81 -0.7 415,562 + DDA3937_RS01860 0.84 +0.0 415,562 + DDA3937_RS01860 0.84 +0.7 415,562 + DDA3937_RS01860 0.84 -0.2 415,562 + DDA3937_RS01860 0.84 -1.0 415,562 + DDA3937_RS01860 0.84 -2.2 415,563 - DDA3937_RS01860 0.84 +0.9 415,563 - DDA3937_RS01860 0.84 -0.5 415,563 - DDA3937_RS01860 0.84 -1.2 415,625 + DDA3937_RS01860 0.88 -0.5 415,625 + DDA3937_RS01860 0.88 +1.2 415,625 + DDA3937_RS01860 0.88 +1.2 415,625 + DDA3937_RS01860 0.88 -0.8 415,625 + DDA3937_RS01860 0.88 +0.1 415,625 + DDA3937_RS01860 0.88 -1.0 415,625 + DDA3937_RS01860 0.88 +0.0 415,625 + DDA3937_RS01860 0.88 +0.2 415,626 - DDA3937_RS01860 0.88 -0.3 415,626 - DDA3937_RS01860 0.88 -0.2 415,626 - DDA3937_RS01860 0.88 -0.4 415,626 - DDA3937_RS01860 0.88 +0.4 415,626 - DDA3937_RS01860 0.88 -0.1 415,626 - DDA3937_RS01860 0.88 -1.1 415,626 - DDA3937_RS01860 0.88 +0.2 415,632 - DDA3937_RS01860 0.89 -1.7 415,677 + -0.7 415,677 + +0.4 415,678 - -0.4 415,678 - -0.6 415,678 - +0.6 415,678 - +0.4 415,678 - -2.2 415,678 - -0.7 415,678 - -0.6 415,714 + -0.4 415,714 + -0.1 415,715 - -2.0 415,715 - -0.0 415,715 - +1.0 415,717 + +0.0 415,718 - +1.1 415,718 - -0.8 415,718 - -0.1 415,753 - +1.5 415,870 + +0.6 415,889 + -0.8 415,916 + +0.1 415,916 + -1.2 415,917 - -0.2 415,917 - +0.4 415,917 - -0.6 415,920 + -0.1 415,920 + -1.0 415,920 + -0.7 415,920 + -0.3 415,920 + -0.2 415,920 + +1.1 415,920 + -0.6 415,920 + -0.8 415,921 - +1.8 415,921 - +0.1 415,921 - +1.2 415,921 - -0.2 415,975 + +0.0 415,975 + -0.3 415,975 + -0.4 415,975 + -1.0 415,975 + +0.6 415,976 - -0.0 415,976 - +2.6 415,976 - +0.1 415,976 - +1.0 416,071 + +0.8 416,090 + +1.0 416,112 + -0.2 416,112 + +0.7 416,112 + +0.1 416,113 - -1.1 416,113 - -0.4 416,113 - -0.5 416,113 - -1.1 416,129 - -0.4 416,164 - -0.2 416,204 + -0.4 416,205 - -0.7 416,226 + +1.0 416,278 + DDA3937_RS01865 0.19 -1.0 416,278 + DDA3937_RS01865 0.19 -0.0 416,278 + DDA3937_RS01865 0.19 +0.2 416,298 + DDA3937_RS01865 0.24 -0.4 416,298 + DDA3937_RS01865 0.24 -0.8 416,328 + DDA3937_RS01865 0.30 -0.9 416,367 - DDA3937_RS01865 0.39 -0.9 416,499 + DDA3937_RS01865 0.68 -0.6 416,499 + DDA3937_RS01865 0.68 -0.5 416,501 + DDA3937_RS01865 0.69 -0.5 416,501 + DDA3937_RS01865 0.69 +0.1 416,622 - -0.6 416,640 + -0.3 416,640 + -0.2 416,641 - +1.2 416,690 - +1.9 416,692 - +0.6 416,915 + DDA3937_RS01870 0.35 -1.0 416,915 + DDA3937_RS01870 0.35 -0.2 416,915 + DDA3937_RS01870 0.35 +0.1 416,915 + DDA3937_RS01870 0.35 -0.1 416,915 + DDA3937_RS01870 0.35 +1.0 416,916 - DDA3937_RS01870 0.35 -0.5 417,024 + DDA3937_RS01870 0.59 -1.5 417,024 + DDA3937_RS01870 0.59 -0.0 417,024 + DDA3937_RS01870 0.59 -0.3 417,025 - DDA3937_RS01870 0.59 +0.4 417,025 - DDA3937_RS01870 0.59 +0.3 417,025 - DDA3937_RS01870 0.59 -0.3 417,116 - DDA3937_RS01870 0.78 +0.1 417,158 + DDA3937_RS01870 0.88 -0.1 417,159 - DDA3937_RS01870 0.88 -0.0 417,199 + -2.2 417,199 + -0.7 417,199 + -0.6 417,200 - -0.7 417,208 + +0.8 417,209 - -0.6 417,209 - -1.0 417,473 + -0.1 417,507 - +0.1 417,521 - +1.4 417,550 + DDA3937_RS01875 0.11 -1.0 417,550 + DDA3937_RS01875 0.11 +1.0 417,551 - DDA3937_RS01875 0.11 -0.3 417,553 + DDA3937_RS01875 0.11 -0.0 417,568 + DDA3937_RS01875 0.12 +0.1 417,568 + DDA3937_RS01875 0.12 -0.4 417,568 + DDA3937_RS01875 0.12 +0.2 417,569 - DDA3937_RS01875 0.12 +2.0 417,574 + DDA3937_RS01875 0.12 -0.1 417,574 + +0.6 417,574 + DDA3937_RS01875 0.12 -1.4 417,575 - DDA3937_RS01875 0.12 -1.0 417,612 + DDA3937_RS01875 0.14 -0.4 417,612 + DDA3937_RS01875 0.14 -1.2 417,613 - DDA3937_RS01875 0.14 -0.4 417,613 - DDA3937_RS01875 0.14 +0.3 417,623 - DDA3937_RS01875 0.14 +0.6 417,639 - DDA3937_RS01875 0.15 +0.4
Or see this region's nucleotide sequence