Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01830

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01820 and DDA3937_RS01825 are separated by 4 nucleotidesDDA3937_RS01825 and DDA3937_RS01830 are separated by 130 nucleotidesDDA3937_RS01830 and DDA3937_RS01835 are separated by 128 nucleotides DDA3937_RS01820: DDA3937_RS01820 - tol-pal system-associated acyl-CoA thioesterase, at 404,652 to 405,500 _RS01820 DDA3937_RS01825: DDA3937_RS01825 - TonB system transport protein ExbD, at 405,505 to 405,924 _RS01825 DDA3937_RS01830: DDA3937_RS01830 - Qnr family pentapeptide repeat protein, at 406,055 to 406,705 _RS01830 DDA3937_RS01835: DDA3937_RS01835 - LacI family DNA-binding transcriptional regulator, at 406,834 to 407,853 _RS01835 Position (kb) 406 407Strain fitness (log2 ratio) -2 -1 0 1 2at 405.227 kb on + strand, within DDA3937_RS01820at 405.348 kb on + strand, within DDA3937_RS01820at 405.348 kb on + strand, within DDA3937_RS01820at 405.348 kb on + strand, within DDA3937_RS01820at 405.349 kb on - strand, within DDA3937_RS01820at 405.349 kb on - strand, within DDA3937_RS01820at 405.350 kb on + strand, within DDA3937_RS01820at 405.350 kb on + strand, within DDA3937_RS01820at 405.499 kb on - strandat 405.596 kb on + strand, within DDA3937_RS01825at 405.727 kb on + strand, within DDA3937_RS01825at 405.883 kb on + strandat 406.056 kb on + strandat 406.056 kb on + strandat 406.056 kb on + strandat 406.057 kb on - strandat 406.057 kb on - strandat 406.057 kb on - strandat 406.070 kb on + strandat 406.071 kb on - strandat 406.096 kb on + strandat 406.096 kb on + strandat 406.097 kb on - strandat 406.097 kb on - strandat 406.097 kb on - strandat 406.097 kb on - strandat 406.100 kb on + strandat 406.101 kb on - strandat 406.111 kb on + strandat 406.111 kb on + strandat 406.112 kb on - strandat 406.112 kb on - strandat 406.116 kb on - strandat 406.138 kb on + strand, within DDA3937_RS01830at 406.138 kb on + strand, within DDA3937_RS01830at 406.175 kb on + strand, within DDA3937_RS01830at 406.175 kb on + strand, within DDA3937_RS01830at 406.175 kb on + strand, within DDA3937_RS01830at 406.176 kb on - strand, within DDA3937_RS01830at 406.219 kb on + strand, within DDA3937_RS01830at 406.219 kb on + strand, within DDA3937_RS01830at 406.220 kb on - strand, within DDA3937_RS01830at 406.220 kb on - strand, within DDA3937_RS01830at 406.295 kb on + strand, within DDA3937_RS01830at 406.296 kb on - strand, within DDA3937_RS01830at 406.314 kb on - strand, within DDA3937_RS01830at 406.314 kb on - strand, within DDA3937_RS01830at 406.359 kb on + strand, within DDA3937_RS01830at 406.359 kb on + strand, within DDA3937_RS01830at 406.359 kb on + strand, within DDA3937_RS01830at 406.359 kb on + strand, within DDA3937_RS01830at 406.360 kb on - strand, within DDA3937_RS01830at 406.360 kb on - strand, within DDA3937_RS01830at 406.360 kb on - strand, within DDA3937_RS01830at 406.360 kb on - strand, within DDA3937_RS01830at 406.360 kb on - strand, within DDA3937_RS01830at 406.387 kb on + strand, within DDA3937_RS01830at 406.445 kb on + strand, within DDA3937_RS01830at 406.480 kb on + strand, within DDA3937_RS01830at 406.480 kb on + strand, within DDA3937_RS01830at 406.481 kb on - strand, within DDA3937_RS01830at 406.481 kb on - strand, within DDA3937_RS01830at 406.532 kb on - strand, within DDA3937_RS01830at 406.532 kb on - strand, within DDA3937_RS01830at 406.534 kb on - strand, within DDA3937_RS01830at 406.534 kb on - strand, within DDA3937_RS01830at 406.599 kb on - strand, within DDA3937_RS01830at 406.599 kb on - strand, within DDA3937_RS01830at 406.624 kb on + strand, within DDA3937_RS01830at 406.624 kb on + strand, within DDA3937_RS01830at 406.633 kb on + strandat 406.634 kb on - strand, within DDA3937_RS01830at 406.687 kb on + strandat 406.718 kb on - strandat 406.718 kb on - strandat 406.767 kb on - strandat 406.817 kb on - strandat 406.817 kb on - strandat 406.817 kb on - strandat 406.817 kb on - strandat 406.880 kb on + strandat 406.880 kb on + strandat 406.880 kb on + strandat 406.880 kb on + strandat 406.880 kb on + strandat 406.881 kb on - strandat 406.881 kb on - strandat 407.006 kb on + strandat 407.006 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.178 kb on - strand, within DDA3937_RS01835at 407.178 kb on - strand, within DDA3937_RS01835at 407.295 kb on - strand, within DDA3937_RS01835at 407.427 kb on + strand, within DDA3937_RS01835at 407.427 kb on + strand, within DDA3937_RS01835at 407.428 kb on - strand, within DDA3937_RS01835at 407.494 kb on + strand, within DDA3937_RS01835at 407.615 kb on + strandat 407.616 kb on - strand, within DDA3937_RS01835at 407.696 kb on + strand, within DDA3937_RS01835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
405,227 + DDA3937_RS01820 0.68 -1.4
405,348 + DDA3937_RS01820 0.82 -0.5
405,348 + DDA3937_RS01820 0.82 -1.0
405,348 + DDA3937_RS01820 0.82 -1.0
405,349 - DDA3937_RS01820 0.82 -1.7
405,349 - DDA3937_RS01820 0.82 +1.6
405,350 + DDA3937_RS01820 0.82 -2.2
405,350 + DDA3937_RS01820 0.82 -1.4
405,499 - -1.2
405,596 + DDA3937_RS01825 0.22 -0.6
405,727 + DDA3937_RS01825 0.53 +0.5
405,883 + -0.3
406,056 + -0.3
406,056 + -0.7
406,056 + -0.5
406,057 - +0.7
406,057 - -0.3
406,057 - -0.1
406,070 + +2.4
406,071 - -2.0
406,096 + +0.3
406,096 + +0.0
406,097 - +0.0
406,097 - -1.4
406,097 - +0.1
406,097 - +0.1
406,100 + -0.5
406,101 - +0.9
406,111 + +0.2
406,111 + -1.2
406,112 - -0.4
406,112 - -0.6
406,116 - -0.4
406,138 + DDA3937_RS01830 0.13 +0.4
406,138 + DDA3937_RS01830 0.13 -0.6
406,175 + DDA3937_RS01830 0.18 +0.0
406,175 + DDA3937_RS01830 0.18 +0.2
406,175 + DDA3937_RS01830 0.18 -0.7
406,176 - DDA3937_RS01830 0.19 -1.4
406,219 + DDA3937_RS01830 0.25 +1.2
406,219 + DDA3937_RS01830 0.25 +0.0
406,220 - DDA3937_RS01830 0.25 +0.1
406,220 - DDA3937_RS01830 0.25 +0.1
406,295 + DDA3937_RS01830 0.37 +1.0
406,296 - DDA3937_RS01830 0.37 -0.5
406,314 - DDA3937_RS01830 0.40 +0.2
406,314 - DDA3937_RS01830 0.40 -0.3
406,359 + DDA3937_RS01830 0.47 +0.5
406,359 + DDA3937_RS01830 0.47 +1.0
406,359 + DDA3937_RS01830 0.47 +0.6
406,359 + DDA3937_RS01830 0.47 -0.1
406,360 - DDA3937_RS01830 0.47 +1.4
406,360 - DDA3937_RS01830 0.47 +0.2
406,360 - DDA3937_RS01830 0.47 -0.7
406,360 - DDA3937_RS01830 0.47 +1.4
406,360 - DDA3937_RS01830 0.47 +0.1
406,387 + DDA3937_RS01830 0.51 -1.2
406,445 + DDA3937_RS01830 0.60 -0.8
406,480 + DDA3937_RS01830 0.65 +0.6
406,480 + DDA3937_RS01830 0.65 -1.2
406,481 - DDA3937_RS01830 0.65 +1.1
406,481 - DDA3937_RS01830 0.65 +0.4
406,532 - DDA3937_RS01830 0.73 -1.1
406,532 - DDA3937_RS01830 0.73 -0.1
406,534 - DDA3937_RS01830 0.74 +1.0
406,534 - DDA3937_RS01830 0.74 -0.4
406,599 - DDA3937_RS01830 0.84 +0.6
406,599 - DDA3937_RS01830 0.84 +0.6
406,624 + DDA3937_RS01830 0.87 +0.1
406,624 + DDA3937_RS01830 0.87 +0.2
406,633 + +1.2
406,634 - DDA3937_RS01830 0.89 +0.4
406,687 + +0.2
406,718 - -0.9
406,718 - -0.4
406,767 - -0.4
406,817 - +0.0
406,817 - -1.5
406,817 - +0.4
406,817 - +0.6
406,880 + +0.3
406,880 + -0.1
406,880 + -0.5
406,880 + -0.0
406,880 + -0.7
406,881 - -1.0
406,881 - +0.6
407,006 + -0.4
407,006 + DDA3937_RS01835 0.17 -0.1
407,177 + DDA3937_RS01835 0.34 +1.2
407,177 + DDA3937_RS01835 0.34 +0.5
407,177 + DDA3937_RS01835 0.34 +0.2
407,177 + DDA3937_RS01835 0.34 -0.4
407,177 + DDA3937_RS01835 0.34 +1.1
407,178 - DDA3937_RS01835 0.34 +0.2
407,178 - DDA3937_RS01835 0.34 -0.4
407,295 - DDA3937_RS01835 0.45 -1.0
407,427 + DDA3937_RS01835 0.58 +0.9
407,427 + DDA3937_RS01835 0.58 -0.5
407,428 - DDA3937_RS01835 0.58 -0.9
407,494 + DDA3937_RS01835 0.65 -2.5
407,615 + +1.2
407,616 - DDA3937_RS01835 0.77 +0.6
407,696 + DDA3937_RS01835 0.85 -0.7

Or see this region's nucleotide sequence