Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01815 and DDA3937_RS01820 are separated by 352 nucleotides DDA3937_RS01820 and DDA3937_RS01825 are separated by 4 nucleotides DDA3937_RS01825 and DDA3937_RS01830 are separated by 130 nucleotides
DDA3937_RS01815: DDA3937_RS01815 - cystathionine beta-lyase, at 403,106 to 404,299
_RS01815
DDA3937_RS01820: DDA3937_RS01820 - tol-pal system-associated acyl-CoA thioesterase, at 404,652 to 405,500
_RS01820
DDA3937_RS01825: DDA3937_RS01825 - TonB system transport protein ExbD, at 405,505 to 405,924
_RS01825
DDA3937_RS01830: DDA3937_RS01830 - Qnr family pentapeptide repeat protein, at 406,055 to 406,705
_RS01830
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.669 kb on - strand, within DDA3937_RS01815 at 403.669 kb on - strand, within DDA3937_RS01815 at 403.693 kb on + strand, within DDA3937_RS01815 at 404.134 kb on - strand, within DDA3937_RS01815 at 404.196 kb on - strand at 404.229 kb on - strand at 404.313 kb on + strand at 404.314 kb on - strand at 404.343 kb on + strand at 404.344 kb on - strand at 404.344 kb on - strand at 404.383 kb on + strand at 404.384 kb on - strand at 404.387 kb on + strand at 404.414 kb on + strand at 404.414 kb on + strand at 404.414 kb on + strand at 404.415 kb on - strand at 404.441 kb on + strand at 404.441 kb on + strand at 404.442 kb on - strand at 404.448 kb on - strand at 404.448 kb on - strand at 404.473 kb on - strand at 404.476 kb on - strand at 404.510 kb on + strand at 404.510 kb on + strand at 404.527 kb on + strand at 404.565 kb on + strand at 404.582 kb on + strand at 404.582 kb on + strand at 404.582 kb on + strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.586 kb on - strand at 404.639 kb on + strand at 404.811 kb on + strand, within DDA3937_RS01820 at 404.811 kb on + strand, within DDA3937_RS01820 at 404.812 kb on - strand at 404.984 kb on + strand, within DDA3937_RS01820 at 405.227 kb on + strand, within DDA3937_RS01820 at 405.348 kb on + strand, within DDA3937_RS01820 at 405.348 kb on + strand, within DDA3937_RS01820 at 405.348 kb on + strand, within DDA3937_RS01820 at 405.349 kb on - strand, within DDA3937_RS01820 at 405.349 kb on - strand, within DDA3937_RS01820 at 405.350 kb on + strand, within DDA3937_RS01820 at 405.350 kb on + strand, within DDA3937_RS01820 at 405.499 kb on - strand at 405.596 kb on + strand, within DDA3937_RS01825 at 405.727 kb on + strand, within DDA3937_RS01825 at 405.883 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.057 kb on - strand at 406.057 kb on - strand at 406.057 kb on - strand at 406.070 kb on + strand at 406.071 kb on - strand at 406.096 kb on + strand at 406.096 kb on + strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.100 kb on + strand at 406.101 kb on - strand at 406.111 kb on + strand at 406.111 kb on + strand at 406.112 kb on - strand at 406.112 kb on - strand at 406.116 kb on - strand at 406.138 kb on + strand, within DDA3937_RS01830 at 406.138 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.176 kb on - strand, within DDA3937_RS01830 at 406.219 kb on + strand, within DDA3937_RS01830 at 406.219 kb on + strand, within DDA3937_RS01830 at 406.220 kb on - strand, within DDA3937_RS01830 at 406.220 kb on - strand, within DDA3937_RS01830 at 406.295 kb on + strand, within DDA3937_RS01830 at 406.296 kb on - strand, within DDA3937_RS01830 at 406.314 kb on - strand, within DDA3937_RS01830 at 406.314 kb on - strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.387 kb on + strand, within DDA3937_RS01830 at 406.445 kb on + strand, within DDA3937_RS01830 at 406.480 kb on + strand, within DDA3937_RS01830 at 406.480 kb on + strand, within DDA3937_RS01830 at 406.481 kb on - strand, within DDA3937_RS01830 at 406.481 kb on - strand, within DDA3937_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 403,668 + DDA3937_RS01815 0.47 +0.9 403,668 + DDA3937_RS01815 0.47 +0.6 403,668 + DDA3937_RS01815 0.47 +0.2 403,669 - DDA3937_RS01815 0.47 -0.6 403,669 - DDA3937_RS01815 0.47 -0.2 403,693 + DDA3937_RS01815 0.49 -0.6 404,134 - DDA3937_RS01815 0.86 +0.3 404,196 - -0.2 404,229 - -0.0 404,313 + +1.0 404,314 - -1.5 404,343 + -1.2 404,344 - -1.0 404,344 - +0.1 404,383 + +0.1 404,384 - -0.9 404,387 + +0.3 404,414 + -1.4 404,414 + -0.4 404,414 + -0.2 404,415 - +0.4 404,441 + -1.0 404,441 + -1.1 404,442 - +0.9 404,448 - -0.2 404,448 - -0.6 404,473 - +0.4 404,476 - -0.5 404,510 + +0.6 404,510 + -0.4 404,527 + -0.1 404,565 + -0.8 404,582 + +0.2 404,582 + -2.3 404,582 + -1.0 404,583 - -0.2 404,583 - -0.0 404,583 - +0.7 404,583 - +1.0 404,586 - -0.2 404,639 + +0.3 404,811 + DDA3937_RS01820 0.19 +0.6 404,811 + DDA3937_RS01820 0.19 -1.0 404,812 - +0.6 404,984 + DDA3937_RS01820 0.39 -0.2 405,227 + DDA3937_RS01820 0.68 -1.4 405,348 + DDA3937_RS01820 0.82 -0.5 405,348 + DDA3937_RS01820 0.82 -1.0 405,348 + DDA3937_RS01820 0.82 -1.0 405,349 - DDA3937_RS01820 0.82 -1.7 405,349 - DDA3937_RS01820 0.82 +1.6 405,350 + DDA3937_RS01820 0.82 -2.2 405,350 + DDA3937_RS01820 0.82 -1.4 405,499 - -1.2 405,596 + DDA3937_RS01825 0.22 -0.6 405,727 + DDA3937_RS01825 0.53 +0.5 405,883 + -0.3 406,056 + -0.3 406,056 + -0.7 406,056 + -0.5 406,057 - +0.7 406,057 - -0.3 406,057 - -0.1 406,070 + +2.4 406,071 - -2.0 406,096 + +0.3 406,096 + +0.0 406,097 - +0.0 406,097 - -1.4 406,097 - +0.1 406,097 - +0.1 406,100 + -0.5 406,101 - +0.9 406,111 + +0.2 406,111 + -1.2 406,112 - -0.4 406,112 - -0.6 406,116 - -0.4 406,138 + DDA3937_RS01830 0.13 +0.4 406,138 + DDA3937_RS01830 0.13 -0.6 406,175 + DDA3937_RS01830 0.18 +0.0 406,175 + DDA3937_RS01830 0.18 +0.2 406,175 + DDA3937_RS01830 0.18 -0.7 406,176 - DDA3937_RS01830 0.19 -1.4 406,219 + DDA3937_RS01830 0.25 +1.2 406,219 + DDA3937_RS01830 0.25 +0.0 406,220 - DDA3937_RS01830 0.25 +0.1 406,220 - DDA3937_RS01830 0.25 +0.1 406,295 + DDA3937_RS01830 0.37 +1.0 406,296 - DDA3937_RS01830 0.37 -0.5 406,314 - DDA3937_RS01830 0.40 +0.2 406,314 - DDA3937_RS01830 0.40 -0.3 406,359 + DDA3937_RS01830 0.47 +0.5 406,359 + DDA3937_RS01830 0.47 +1.0 406,359 + DDA3937_RS01830 0.47 +0.6 406,359 + DDA3937_RS01830 0.47 -0.1 406,360 - DDA3937_RS01830 0.47 +1.4 406,360 - DDA3937_RS01830 0.47 +0.2 406,360 - DDA3937_RS01830 0.47 -0.7 406,360 - DDA3937_RS01830 0.47 +1.4 406,360 - DDA3937_RS01830 0.47 +0.1 406,387 + DDA3937_RS01830 0.51 -1.2 406,445 + DDA3937_RS01830 0.60 -0.8 406,480 + DDA3937_RS01830 0.65 +0.6 406,480 + DDA3937_RS01830 0.65 -1.2 406,481 - DDA3937_RS01830 0.65 +1.1 406,481 - DDA3937_RS01830 0.65 +0.4
Or see this region's nucleotide sequence